Functional clusters

Information

  • Type Gene Ontology
  • Description carbohydrate binding

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Anthoceros agrestis Sc2ySwM_340 3 CH_aag_199 4 9 0.000918967
Ananas comosus LG13 3 CH_aco_7 10 15 0.0000000000000481661
Allium sativum chr7_1 3 CH_asa_201 6 8 0.0000000603628
Allium sativum chr7_1 3 CH_asa_28 15 51 3.97196e-17
Allium sativum chr2 3 CH_asa_510 4 4 0.0000633735
Allium sativum chr8 3 CH_asa_596 5 11 0.000166922
Aegilops tauschii 2D 3 CH_ata_210 5 6 0.0000223949
Arabidopsis thaliana Chr2 3 CH_ath_300 5 7 0.00000501347
Arabidopsis thaliana Chr3 3 CH_ath_347 7 31 0.0000145192
Arabidopsis thaliana Chr2 3 CH_ath_65 10 22 0.000000000000473845
Amborella trichopoda AmTr_v1.0_scaffold00046 3 CH_atr_65 7 11 0.00000000127468
Brachypodium distachyon Bd1 3 CH_bdi_15 15 30 4.67813e-19
Brachypodium distachyon Bd1 3 CH_bdi_69 6 6 0.0000000144723
Calamus simplicifolius scaffold134 3 CH_calsi_34 7 8 0.000000000109455
Calamus simplicifolius scaffold7 3 CH_calsi_56 7 13 0.0000000228331
Ceratophyllum demersum 5 3 CH_cde_51 5 6 0.00000121728
Ceratophyllum demersum 1 3 CH_cde_81 5 8 0.0000112485
Cenchrus purpureus GWHAORA00000005 3 CH_cpu_286 12 57 0.0000000581572
Cenchrus purpureus GWHAORA00000001 3 CH_cpu_290 12 58 0.0000000726195
Cenchrus purpureus GWHAORA00000001 3 CH_cpu_416 10 45 0.00000263129
Cenchrus purpureus GWHAORA00000013 3 CH_cpu_934 4 4 0.000829853
Dioscorea dumetorum contig281 3 CH_ddu_142 4 4 0.0000531613
Dioscorea dumetorum contig267 3 CH_ddu_79 10 43 0.00000000565908
Dioscorea dumetorum contig282 3 CH_ddu_98 6 9 0.000000182346
Digitaria exilis Dexi_CM05836_chr09A 3 CH_dex_643 4 4 0.000526224
Eragrostis curvula Contig30 3 CH_ecu_214 10 24 0.000000000415943
Eragrostis curvula Contig4 3 CH_ecu_299 9 25 0.0000000300141
Eragrostis curvula 1 3 CH_ecu_398 10 46 0.000000719224
Eragrostis curvula Contig4 3 CH_ecu_523 6 11 0.0000147783
Elaeis guineensis EG5.1_Chr12 3 CH_egu_128 4 4 0.0000450639
Elaeis guineensis EG5.1_Chr1 3 CH_egu_190 4 5 0.000224105
Elaeis guineensis EG5.1_Chr1 3 CH_egu_2 11 17 2.7483e-16
Glycine max Gm08 3 CH_gma_106 7 8 0.000000000587462
Glycine max Gm08 3 CH_gma_127 7 9 0.00000000262623
Glycine max Gm09 3 CH_gma_402 4 4 0.000174111
Glycine max Gm14 3 CH_gma_590 4 5 0.000865291
Glycine max Gm17 3 CH_gma_591 4 5 0.000865291
Hordeum vulgare chr5H 3 CH_hvu_28 11 16 0.00000000000000239619
Hordeum vulgare chr2H 3 CH_hvu_318 6 16 0.00011756
Lolium perenne Lp_chr3_0 3 CH_lpe_188 5 6 0.00000163177
Lolium perenne Lp_chr2_0 3 CH_lpe_203 6 14 0.00000419519
Lolium perenne Lp_chr6_0 3 CH_lpe_227 6 16 0.0000110857
Lolium perenne Lp_chr7_0.1 3 CH_lpe_432 4 6 0.000763686
Musa acuminata chr08 3 CH_mac_105 7 22 0.00000987837
Musa acuminata chr09 3 CH_mac_109 6 13 0.0000135422
Musa acuminata chr09 3 CH_mac_14 10 10 2.92918e-17
Musa acuminata chr01 3 CH_mac_165 4 4 0.000135971
Magnolia biondii Chr05 3 CH_mbi_33 15 56 1.10053e-17
Magnolia biondii Chr16 3 CH_mbi_50 8 8 0.0000000000000146433
Marchantia polymorpha scaffold_27 3 CH_mpo_10 11 31 0.000000000000181103
Miscanthus sinensis Chr15 3 CH_msi_258 7 17 0.00000477278
Miscanthus sinensis Chr02 3 CH_msi_478 4 4 0.000386039
Miscanthus sinensis Chr04 3 CH_msi_69 10 20 0.0000000000305585
Oryza alta GWHAZTO00000007 3 CH_oal_101 8 15 0.000000000250803
Oryza alta GWHAZTO00000008 3 CH_oal_358 6 15 0.00000776606
Oryza alta GWHAZTO00000007 3 CH_oal_484 4 4 0.0000641869
Oryza alta GWHAZTO00000002 3 CH_oal_605 7 44 0.000262695
Oryza alta GWHAZTO00000016 3 CH_oal_77 10 30 0.000000000027286
Oryza alta GWHAZTO00000019 3 CH_oal_79 9 20 0.0000000000319948
Oryza brachyantha 4 3 CH_obr_171 6 14 0.0000276483
Oryza brachyantha 7 3 CH_obr_42 9 20 0.000000000774818
Oryza sativa ssp. indica Chr2 3 CH_osaindica_210 5 7 0.0000158986
Oryza sativa ssp. indica Chr7 3 CH_osaindica_29 11 21 0.0000000000000322211
Oryza sativa Kitaake Chr7 3 CH_osak_15 16 22 4.29744e-23
Oryza sativa Kitaake Chr8 3 CH_osak_16 13 13 5.81135e-22
Oryza sativa Kitaake Chr2 3 CH_osak_57 14 42 0.000000000000239558
Oryza sativa ssp. japonica chr08 3 CH_osa_196 8 24 0.00000238106
Oryza sativa ssp. japonica chr02 3 CH_osa_213 10 51 0.00000520332
Oryza sativa ssp. japonica chr07 3 CH_osa_92 10 26 0.00000000273909
Phyllostachys edulis hic_scaffold_10 3 CH_ped_12 18 36 1.03649e-21
Phyllostachys edulis hic_scaffold_22 3 CH_ped_137 6 6 0.0000000739209
Phyllostachys edulis hic_scaffold_15 3 CH_ped_245 5 5 0.00000693711
Phyllostachys edulis hic_scaffold_3 3 CH_ped_302 5 6 0.0000412522
Phyllostachys edulis hic_scaffold_4 3 CH_ped_32 11 14 0.00000000000000348958
Phyllostachys edulis hic_scaffold_19 3 CH_ped_329 7 21 0.0000802088
Panicum hallii Chr01 3 CH_pha_167 5 5 0.00000159246
Panicum hallii Chr02 3 CH_pha_326 4 4 0.000187041
Panicum hallii Chr02 3 CH_pha_327 4 4 0.000187041
Populus trichocarpa Chr02 3 CH_ptr_407 4 4 0.00025154
Populus trichocarpa Chr01 3 CH_ptr_408 4 4 0.00025154
Sorghum bicolor Chr02 3 CH_sbi_171 9 36 0.000000709496
Sorghum bicolor Chr04 3 CH_sbi_46 8 8 0.00000000000108701
Sorghum bicolor Chr02 3 CH_sbi_466 4 5 0.000981822
Secale cereale GWHASIY00000004 3 CH_sce_332 7 14 0.00000315742
Secale cereale GWHASIY00000006 3 CH_sce_371 5 5 0.00000790168
Secale cereale GWHASIY00000004 3 CH_sce_822 5 9 0.000958954
Sequoiadendron giganteum chr5 3 CH_sgi_143 11 11 1.80645e-18
Sequoiadendron giganteum chr1 3 CH_sgi_543 7 10 0.0000000295729
Sequoiadendron giganteum chr5 3 CH_sgi_63 21 47 6.52514e-26
Sequoiadendron giganteum chr5 3 CH_sgi_906 6 12 0.000024027
Setaria italica scaffold_2 3 CH_sit_382 4 4 0.000295209
Setaria italica scaffold_2 3 CH_sit_68 8 8 0.00000000000241036
Solanum lycopersicum SL4.0ch11 3 CH_sly_157 6 7 0.000000120563
Solanum lycopersicum SL4.0ch04 3 CH_sly_447 4 4 0.000220173
Spirodela polyrhiza pseudo21 3 CH_spo_72 5 5 0.000000432323
Saccharum spontaneum Chr2B 3 CH_ssp_306 6 7 0.000000819054
Saccharum spontaneum Chr2B 3 CH_ssp_459 5 5 0.0000111835
Saccharum spontaneum Chr8C 3 CH_ssp_659 6 12 0.000103312
Saccharum spontaneum Chr6B 3 CH_ssp_678 7 21 0.000127186
Setaria viridis Chr_01 3 CH_svi_387 4 4 0.000199348
Setaria viridis Chr_02 3 CH_svi_388 4 4 0.000199348
Setaria viridis Chr_02 3 CH_svi_84 8 11 0.000000000159275
Triticum aestivum Chr2D 3 CH_tae_1148 5 6 0.000203759
Triticum aestivum Chr7B 3 CH_tae_732 7 11 0.00000171873
Triticum dicoccoides 2B 3 CH_tdi_227 6 8 0.000000571929
Triticum dicoccoides 6A 3 CH_tdi_537 4 4 0.000309133
Triticum turgidum chr7B 3 CH_ttu_235 8 14 0.000000068838
Triticum turgidum chr7A 3 CH_ttu_451 7 17 0.0000363792
Zea mays B73 6 3 CH_zma_224 10 75 0.00013583
Anthoceros agrestis Sc2ySwM_340 4 CH_aag_199 4 9 0.000918967
Ananas comosus LG13 4 CH_aco_7 10 15 0.0000000000000481661
Allium sativum chr7_1 4 CH_asa_201 6 8 0.0000000603628
Allium sativum chr7_1 4 CH_asa_28 15 51 3.97196e-17
Allium sativum chr2 4 CH_asa_510 4 4 0.0000633735
Allium sativum chr8 4 CH_asa_596 5 11 0.000166922
Aegilops tauschii 2D 4 CH_ata_210 5 6 0.0000223949
Arabidopsis thaliana Chr2 4 CH_ath_300 5 7 0.00000501347
Arabidopsis thaliana Chr3 4 CH_ath_347 7 31 0.0000145192
Arabidopsis thaliana Chr2 4 CH_ath_65 10 22 0.000000000000473845
Amborella trichopoda AmTr_v1.0_scaffold00046 4 CH_atr_65 7 11 0.00000000127468
Brachypodium distachyon Bd1 4 CH_bdi_15 15 30 4.67813e-19
Brachypodium distachyon Bd1 4 CH_bdi_69 6 6 0.0000000144723
Calamus simplicifolius scaffold134 4 CH_calsi_34 7 8 0.000000000109455
Calamus simplicifolius scaffold7 4 CH_calsi_56 7 13 0.0000000228331
Ceratophyllum demersum 5 4 CH_cde_51 5 6 0.00000121728
Ceratophyllum demersum 1 4 CH_cde_81 5 8 0.0000112485
Cenchrus purpureus GWHAORA00000005 4 CH_cpu_286 12 57 0.0000000581572
Cenchrus purpureus GWHAORA00000001 4 CH_cpu_290 12 58 0.0000000726195
Cenchrus purpureus GWHAORA00000001 4 CH_cpu_416 10 45 0.00000263129
Cenchrus purpureus GWHAORA00000013 4 CH_cpu_934 4 4 0.000829853
Dioscorea dumetorum contig281 4 CH_ddu_142 4 4 0.0000531613
Dioscorea dumetorum contig267 4 CH_ddu_79 10 43 0.00000000565908
Dioscorea dumetorum contig282 4 CH_ddu_98 6 9 0.000000182346
Digitaria exilis Dexi_CM05836_chr09A 4 CH_dex_643 4 4 0.000526224
Eragrostis curvula Contig30 4 CH_ecu_214 10 24 0.000000000415943
Eragrostis curvula Contig4 4 CH_ecu_299 9 25 0.0000000300141
Eragrostis curvula 1 4 CH_ecu_398 10 46 0.000000719224
Eragrostis curvula Contig4 4 CH_ecu_523 6 11 0.0000147783
Elaeis guineensis EG5.1_Chr12 4 CH_egu_128 4 4 0.0000450639
Elaeis guineensis EG5.1_Chr1 4 CH_egu_190 4 5 0.000224105
Elaeis guineensis EG5.1_Chr1 4 CH_egu_2 11 17 2.7483e-16
Glycine max Gm08 4 CH_gma_106 7 8 0.000000000587462
Glycine max Gm08 4 CH_gma_127 7 9 0.00000000262623
Glycine max Gm09 4 CH_gma_402 4 4 0.000174111
Glycine max Gm14 4 CH_gma_590 4 5 0.000865291
Glycine max Gm17 4 CH_gma_591 4 5 0.000865291
Hordeum vulgare chr5H 4 CH_hvu_28 11 16 0.00000000000000239619
Hordeum vulgare chr2H 4 CH_hvu_318 6 16 0.00011756
Lolium perenne Lp_chr3_0 4 CH_lpe_188 5 6 0.00000163177
Lolium perenne Lp_chr2_0 4 CH_lpe_203 6 14 0.00000419519
Lolium perenne Lp_chr6_0 4 CH_lpe_227 6 16 0.0000110857
Lolium perenne Lp_chr7_0.1 4 CH_lpe_432 4 6 0.000763686
Musa acuminata chr08 4 CH_mac_105 7 22 0.00000987837
Musa acuminata chr09 4 CH_mac_109 6 13 0.0000135422
Musa acuminata chr09 4 CH_mac_14 10 10 2.92918e-17
Musa acuminata chr01 4 CH_mac_165 4 4 0.000135971
Magnolia biondii Chr05 4 CH_mbi_33 15 56 1.10053e-17
Magnolia biondii Chr16 4 CH_mbi_50 8 8 0.0000000000000146433
Marchantia polymorpha scaffold_27 4 CH_mpo_10 11 31 0.000000000000181103
Miscanthus sinensis Chr15 4 CH_msi_258 7 17 0.00000477278
Miscanthus sinensis Chr02 4 CH_msi_478 4 4 0.000386039
Miscanthus sinensis Chr04 4 CH_msi_69 10 20 0.0000000000305585
Oryza alta GWHAZTO00000007 4 CH_oal_101 8 15 0.000000000250803
Oryza alta GWHAZTO00000008 4 CH_oal_358 6 15 0.00000776606
Oryza alta GWHAZTO00000007 4 CH_oal_484 4 4 0.0000641869
Oryza alta GWHAZTO00000002 4 CH_oal_605 7 44 0.000262695
Oryza alta GWHAZTO00000016 4 CH_oal_77 10 30 0.000000000027286
Oryza alta GWHAZTO00000019 4 CH_oal_79 9 20 0.0000000000319948
Oryza brachyantha 4 4 CH_obr_171 6 14 0.0000276483
Oryza brachyantha 7 4 CH_obr_42 9 20 0.000000000774818
Oryza sativa ssp. indica Chr2 4 CH_osaindica_210 5 7 0.0000158986
Oryza sativa ssp. indica Chr7 4 CH_osaindica_29 11 21 0.0000000000000322211
Oryza sativa Kitaake Chr7 4 CH_osak_15 16 22 4.29744e-23
Oryza sativa Kitaake Chr8 4 CH_osak_16 13 13 5.81135e-22
Oryza sativa Kitaake Chr2 4 CH_osak_57 14 42 0.000000000000239558
Oryza sativa ssp. japonica chr08 4 CH_osa_196 8 24 0.00000238106
Oryza sativa ssp. japonica chr02 4 CH_osa_213 10 51 0.00000520332
Oryza sativa ssp. japonica chr07 4 CH_osa_92 10 26 0.00000000273909
Phyllostachys edulis hic_scaffold_10 4 CH_ped_12 18 36 1.03649e-21
Phyllostachys edulis hic_scaffold_22 4 CH_ped_137 6 6 0.0000000739209
Phyllostachys edulis hic_scaffold_15 4 CH_ped_245 5 5 0.00000693711
Phyllostachys edulis hic_scaffold_3 4 CH_ped_302 5 6 0.0000412522
Phyllostachys edulis hic_scaffold_4 4 CH_ped_32 11 14 0.00000000000000348958
Phyllostachys edulis hic_scaffold_19 4 CH_ped_329 7 21 0.0000802088
Panicum hallii Chr01 4 CH_pha_167 5 5 0.00000159246
Panicum hallii Chr02 4 CH_pha_326 4 4 0.000187041
Panicum hallii Chr02 4 CH_pha_327 4 4 0.000187041
Populus trichocarpa Chr02 4 CH_ptr_407 4 4 0.00025154
Populus trichocarpa Chr01 4 CH_ptr_408 4 4 0.00025154
Sorghum bicolor Chr02 4 CH_sbi_171 9 36 0.000000709496
Sorghum bicolor Chr04 4 CH_sbi_46 8 8 0.00000000000108701
Sorghum bicolor Chr02 4 CH_sbi_466 4 5 0.000981822
Secale cereale GWHASIY00000004 4 CH_sce_332 7 14 0.00000315742
Secale cereale GWHASIY00000006 4 CH_sce_371 5 5 0.00000790168
Secale cereale GWHASIY00000004 4 CH_sce_822 5 9 0.000958954
Sequoiadendron giganteum chr5 4 CH_sgi_143 11 11 1.80645e-18
Sequoiadendron giganteum chr1 4 CH_sgi_543 7 10 0.0000000295729
Sequoiadendron giganteum chr5 4 CH_sgi_63 21 47 6.52514e-26
Sequoiadendron giganteum chr5 4 CH_sgi_906 6 12 0.000024027
Setaria italica scaffold_2 4 CH_sit_382 4 4 0.000295209
Setaria italica scaffold_2 4 CH_sit_68 8 8 0.00000000000241036
Solanum lycopersicum SL4.0ch11 4 CH_sly_157 6 7 0.000000120563
Solanum lycopersicum SL4.0ch04 4 CH_sly_447 4 4 0.000220173
Spirodela polyrhiza pseudo21 4 CH_spo_72 5 5 0.000000432323
Saccharum spontaneum Chr2B 4 CH_ssp_306 6 7 0.000000819054
Saccharum spontaneum Chr2B 4 CH_ssp_459 5 5 0.0000111835
Saccharum spontaneum Chr8C 4 CH_ssp_659 6 12 0.000103312
Saccharum spontaneum Chr6B 4 CH_ssp_678 7 21 0.000127186
Setaria viridis Chr_01 4 CH_svi_387 4 4 0.000199348
Setaria viridis Chr_02 4 CH_svi_388 4 4 0.000199348
Setaria viridis Chr_02 4 CH_svi_84 8 11 0.000000000159275
Triticum aestivum Chr2D 4 CH_tae_1148 5 6 0.000203759
Triticum aestivum Chr7B 4 CH_tae_732 7 11 0.00000171873
Triticum dicoccoides 2B 4 CH_tdi_227 6 8 0.000000571929
Triticum dicoccoides 6A 4 CH_tdi_537 4 4 0.000309133
Triticum turgidum chr7B 4 CH_ttu_235 8 14 0.000000068838
Triticum turgidum chr7A 4 CH_ttu_451 7 17 0.0000363792
Zea mays B73 6 4 CH_zma_224 10 75 0.00013583

Available child term results

Ontology identifier Description Number of clusters
GO:0005536 glucose binding 6
GO:0030247 polysaccharide binding 470
GO:0031418 L-ascorbic acid binding 8
GO:2001070 starch binding 6

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001