Functional clusters
Information
- Type Gene Ontology
- Description protein domain specific binding
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Cenchrus purpureus | GWHAORA00000002 | 3 | CH_cpu_186 | 6 | 7 | 0.000000000333494 |
| Cenchrus purpureus | GWHAORA00000010 | 3 | CH_cpu_53 | 9 | 10 | 1.20695e-17 |
| Digitaria exilis | Dexi_CM05836_chrUA | 3 | CH_dex_103 | 6 | 6 | 0.00000000001575 |
| Digitaria exilis | Dexi_CM05836_chr02B | 3 | CH_dex_104 | 6 | 6 | 0.00000000001575 |
| Digitaria exilis | Dexi_CM05836_chr02A | 3 | CH_dex_65 | 7 | 7 | 0.0000000000000389545 |
| Eragrostis curvula | 4 | 3 | CH_ecu_279 | 5 | 6 | 0.0000000142511 |
| Miscanthus sinensis | Chr04 | 3 | CH_msi_105 | 6 | 10 | 0.000000001395 |
| Oryza alta | GWHAZTO00000003 | 3 | CH_oal_602 | 3 | 3 | 0.00023348 |
| Populus trichocarpa | Chr16 | 3 | CH_ptr_21 | 12 | 13 | 2.80101e-24 |
| Sorghum bicolor | Chr02 | 3 | CH_sbi_117 | 5 | 6 | 0.0000000247439 |
| Sequoiadendron giganteum | chr1 | 3 | CH_sgi_802 | 4 | 5 | 0.0000042273 |
| Setaria italica | scaffold_2 | 3 | CH_sit_18 | 11 | 14 | 5.40099e-22 |
| Saccharum spontaneum | Chr2C | 3 | CH_ssp_300 | 5 | 8 | 0.000000709405 |
| Saccharum spontaneum | Chr2B | 3 | CH_ssp_411 | 4 | 4 | 0.00000470966 |
| Saccharum spontaneum | Chr2D | 3 | CH_ssp_412 | 4 | 4 | 0.00000470966 |
| Saccharum spontaneum | Chr2A | 3 | CH_ssp_736 | 4 | 7 | 0.000163763 |
| Setaria viridis | Chr_02 | 3 | CH_svi_31 | 8 | 9 | 3.95255e-16 |
| Triticum aestivum | Chr5B | 3 | CH_tae_906 | 5 | 15 | 0.0000175937 |
| Triticum turgidum | chr5B | 3 | CH_ttu_234 | 6 | 16 | 0.0000000666311 |
| Cenchrus purpureus | GWHAORA00000002 | 4 | CH_cpu_186 | 6 | 7 | 0.000000000333494 |
| Cenchrus purpureus | GWHAORA00000010 | 4 | CH_cpu_53 | 9 | 10 | 1.20695e-17 |
| Digitaria exilis | Dexi_CM05836_chrUA | 4 | CH_dex_103 | 6 | 6 | 0.00000000001575 |
| Digitaria exilis | Dexi_CM05836_chr02B | 4 | CH_dex_104 | 6 | 6 | 0.00000000001575 |
| Digitaria exilis | Dexi_CM05836_chr02A | 4 | CH_dex_65 | 7 | 7 | 0.0000000000000389545 |
| Eragrostis curvula | 4 | 4 | CH_ecu_279 | 5 | 6 | 0.0000000142511 |
| Miscanthus sinensis | Chr04 | 4 | CH_msi_105 | 6 | 10 | 0.000000001395 |
| Oryza alta | GWHAZTO00000003 | 4 | CH_oal_602 | 3 | 3 | 0.00023348 |
| Populus trichocarpa | Chr16 | 4 | CH_ptr_21 | 12 | 13 | 2.80101e-24 |
| Sorghum bicolor | Chr02 | 4 | CH_sbi_117 | 5 | 6 | 0.0000000247439 |
| Sequoiadendron giganteum | chr1 | 4 | CH_sgi_802 | 4 | 5 | 0.0000042273 |
| Setaria italica | scaffold_2 | 4 | CH_sit_18 | 11 | 14 | 5.40099e-22 |
| Saccharum spontaneum | Chr2C | 4 | CH_ssp_300 | 5 | 8 | 0.000000709405 |
| Saccharum spontaneum | Chr2B | 4 | CH_ssp_411 | 4 | 4 | 0.00000470966 |
| Saccharum spontaneum | Chr2D | 4 | CH_ssp_412 | 4 | 4 | 0.00000470966 |
| Saccharum spontaneum | Chr2A | 4 | CH_ssp_736 | 4 | 7 | 0.000163763 |
| Setaria viridis | Chr_02 | 4 | CH_svi_31 | 8 | 9 | 3.95255e-16 |
| Triticum aestivum | Chr5B | 4 | CH_tae_906 | 5 | 15 | 0.0000175937 |
| Triticum turgidum | chr5B | 4 | CH_ttu_234 | 6 | 16 | 0.0000000666311 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |