Functional clusters

Information

  • Type Gene Ontology
  • Description phosphate-containing compound metabolic process

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Cenchrus purpureus GWHAORA00000004 3 CH_cpu_935 11 22 0.000842899
Oryza sativa ssp. japonica chr08 3 CH_osa_418 8 10 0.000490136
Panicum hallii Chr07 3 CH_pha_218 8 9 0.0000188264
Sequoiadendron giganteum chr8 3 CH_sgi_266 23 46 0.000000000000347442
Sequoiadendron giganteum chr6 3 CH_sgi_839 15 37 0.00000782109
Solanum lycopersicum SL4.0ch03 3 CH_sly_485 21 76 0.00044254
Selaginella moellendorffii scaffold_2 3 CH_smo_179 13 39 0.000784748
Cenchrus purpureus GWHAORA00000004 4 CH_cpu_935 11 22 0.000842899
Oryza sativa ssp. japonica chr08 4 CH_osa_418 8 10 0.000490136
Panicum hallii Chr07 4 CH_pha_218 8 9 0.0000188264
Sequoiadendron giganteum chr8 4 CH_sgi_266 23 46 0.000000000000347442
Sequoiadendron giganteum chr6 4 CH_sgi_839 15 37 0.00000782109
Solanum lycopersicum SL4.0ch03 4 CH_sly_485 21 76 0.00044254
Selaginella moellendorffii scaffold_2 4 CH_smo_179 13 39 0.000784748

Available child term results

Ontology identifier Description Number of clusters
GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity 20
GO:0006003 fructose 2,6-bisphosphate metabolic process 8
GO:0006104 succinyl-CoA metabolic process 4
GO:0006176 dATP biosynthetic process from ADP 2
GO:0006177 GMP biosynthetic process 2
GO:0006182 cGMP biosynthetic process 4
GO:0006183 GTP biosynthetic process 2
GO:0006226 dUMP biosynthetic process 2
GO:0006228 UTP biosynthetic process 2
GO:0006233 dTDP biosynthetic process 4
GO:0006468 protein phosphorylation 302
GO:0006470 protein dephosphorylation 12
GO:0006506 GPI anchor biosynthetic process 4
GO:0006650 glycerophospholipid metabolic process 2
GO:0006654 phosphatidic acid biosynthetic process 2
GO:0006661 phosphatidylinositol biosynthetic process 4
GO:0006741 NADP biosynthetic process 4
GO:0006753 nucleoside phosphate metabolic process 2
GO:0008654 phospholipid biosynthetic process 2
GO:0009134 nucleoside diphosphate catabolic process 2
GO:0009143 nucleoside triphosphate catabolic process 6
GO:0009166 nucleotide catabolic process 2
GO:0009173 pyrimidine ribonucleoside monophosphate metabolic process 2
GO:0009263 deoxyribonucleotide biosynthetic process 2
GO:0009395 phospholipid catabolic process 4
GO:0009435 NAD biosynthetic process 2
GO:0009443 pyridoxal 5'-phosphate salvage 2
GO:0010142 farnesyl diphosphate biosynthetic process, mevalonate pathway 2
GO:0010323 negative regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway 2
GO:0010513 positive regulation of phosphatidylinositol biosynthetic process 2
GO:0010922 positive regulation of phosphatase activity 14
GO:0015936 coenzyme A metabolic process 2
GO:0015938 coenzyme A catabolic process 2
GO:0015966 diadenosine tetraphosphate biosynthetic process 2
GO:0015969 guanosine tetraphosphate metabolic process 6
GO:0015970 guanosine tetraphosphate biosynthetic process 2
GO:0015986 ATP synthesis coupled proton transport 20
GO:0016255 attachment of GPI anchor to protein 4
GO:0016310 phosphorylation 12
GO:0016311 dephosphorylation 2
GO:0018108 peptidyl-tyrosine phosphorylation 4
GO:0019365 pyridine nucleotide salvage 6
GO:0019677 NAD catabolic process 4
GO:0030388 fructose 1,6-bisphosphate metabolic process 2
GO:0032049 cardiolipin biosynthetic process 2
GO:0032147 activation of protein kinase activity 4
GO:0032264 IMP salvage 8
GO:0032324 molybdopterin cofactor biosynthetic process 2
GO:0032957 inositol trisphosphate metabolic process 2
GO:0033674 positive regulation of kinase activity 2
GO:0033866 nucleoside bisphosphate biosynthetic process 2
GO:0034355 NAD salvage 2
GO:0035335 peptidyl-tyrosine dephosphorylation 2
GO:0036092 phosphatidylinositol-3-phosphate biosynthetic process 2
GO:0036289 peptidyl-serine autophosphorylation 2
GO:0036290 protein trans-autophosphorylation 2
GO:0043407 negative regulation of MAP kinase activity 4
GO:0043666 regulation of phosphoprotein phosphatase activity 2
GO:0044205 'de novo' UMP biosynthetic process 34
GO:0045339 farnesyl diphosphate catabolic process 8
GO:0045736 negative regulation of cyclin-dependent protein serine/threonine kinase activity 2
GO:0046167 glycerol-3-phosphate biosynthetic process 2
GO:0046473 phosphatidic acid metabolic process 4
GO:0046777 protein autophosphorylation 14
GO:0046835 carbohydrate phosphorylation 6
GO:0046855 inositol phosphate dephosphorylation 4
GO:0046856 phosphatidylinositol dephosphorylation 4
GO:0046939 nucleotide phosphorylation 6
GO:0050732 negative regulation of peptidyl-tyrosine phosphorylation 2
GO:0070262 peptidyl-serine dephosphorylation 10
GO:0070940 dephosphorylation of RNA polymerase II C-terminal domain 10
GO:0072355 histone H3-T3 phosphorylation 4
GO:0080163 regulation of protein serine/threonine phosphatase activity 4
GO:0106046 guanine deglycation, glyoxal removal 2
GO:1900486 positive regulation of isopentenyl diphosphate biosynthetic process, mevalonate pathway 2
GO:1901407 regulation of phosphorylation of RNA polymerase II C-terminal domain 2
GO:1901969 positive regulation of polynucleotide 3'-phosphatase activity 2
GO:1903730 regulation of phosphatidate phosphatase activity 2
GO:2001294 malonyl-CoA catabolic process 2

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001