Functional clusters
Information
- Type MapMan
- Description Protein biosynthesis.translation elongation.eEF1 aminoacyl-tRNA binding factor activity.aminoacyl-tRNA binding factor (eEF1A)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Aegilops tauschii | 4D | 1 | CH_ata_347 | 2 | 3 | 0.000886299 |
| Arabidopsis thaliana | Chr1 | 1 | CH_ath_106 | 3 | 4 | 0.0000000196984 |
| Brachypodium distachyon | Bd1 | 1 | CH_bdi_96 | 3 | 4 | 0.000000228162 |
| Chara braunii | BFEA01000221 | 1 | CH_cbr_31 | 3 | 5 | 0.000000775911 |
| Ceratophyllum demersum | 7 | 1 | CH_cde_58 | 3 | 8 | 0.00000523735 |
| Cenchrus purpureus | GWHAORA00000008 | 1 | CH_cpu_105 | 5 | 9 | 0.00000000000533749 |
| Cenchrus purpureus | GWHAORA00000004 | 1 | CH_cpu_364 | 3 | 3 | 0.000000974792 |
| Digitaria exilis | Dexi_CM05836_chr03B | 1 | CH_dex_109 | 4 | 5 | 0.0000000013324 |
| Eragrostis curvula | 7 | 1 | CH_ecu_242 | 3 | 3 | 0.0000000451 |
| Eragrostis curvula | Contig30 | 1 | CH_ecu_740 | 2 | 3 | 0.000581587 |
| Hordeum vulgare | chr5H | 1 | CH_hvu_457 | 2 | 2 | 0.000852255 |
| Marchantia polymorpha | scaffold_145 | 1 | CH_mpo_16 | 4 | 4 | 0.000000000848827 |
| Miscanthus sinensis | Chr16 | 1 | CH_msi_169 | 3 | 3 | 0.000000256604 |
| Miscanthus sinensis | Chr17 | 1 | CH_msi_254 | 3 | 6 | 0.00000513034 |
| Oryza alta | GWHAZTO00000003 | 1 | CH_oal_184 | 3 | 7 | 0.000000213171 |
| Oryza brachyantha | 3 | 1 | CH_obr_233 | 2 | 3 | 0.000179201 |
| Oryza sativa ssp. indica | Chr3 | 1 | CH_osaindica_89 | 3 | 5 | 0.0000000400317 |
| Oryza sativa Kitaake | Chr3 | 1 | CH_osak_68 | 4 | 5 | 0.00000000000267492 |
| Oryza sativa ssp. japonica | chr03 | 1 | CH_osa_86 | 3 | 5 | 0.0000000418359 |
| Oropetium thomaeum | Chromosome_4 | 1 | CH_oth_252 | 2 | 3 | 0.000640623 |
| Phyllostachys edulis | hic_scaffold_15 | 1 | CH_ped_25 | 6 | 10 | 2.45104e-16 |
| Phyllostachys edulis | hic_scaffold_21 | 1 | CH_ped_80 | 4 | 6 | 0.00000000100434 |
| Panicum hallii | Chr03 | 1 | CH_pha_10 | 7 | 14 | 3.74618e-19 |
| Physcomitrium patens | Chr02 | 1 | CH_ppa_60 | 4 | 38 | 0.0000106341 |
| Physcomitrium patens | Chr01 | 1 | CH_ppa_7 | 5 | 13 | 0.0000000000342481 |
| Populus trichocarpa | Chr10 | 1 | CH_ptr_147 | 4 | 9 | 0.00000000919121 |
| Populus trichocarpa | Chr08 | 1 | CH_ptr_261 | 3 | 6 | 0.00000841518 |
| Sorghum bicolor | Chr10 | 1 | CH_sbi_60 | 4 | 5 | 0.0000000000151456 |
| Secale cereale | GWHASIY00000005 | 1 | CH_sce_233 | 4 | 20 | 0.00000017254 |
| Setaria italica | scaffold_3 | 1 | CH_sit_16 | 7 | 12 | 2.86176e-19 |
| Solanum lycopersicum | SL4.0ch06 | 1 | CH_sly_556 | 2 | 2 | 0.000880411 |
| Solanum lycopersicum | SL4.0ch11 | 1 | CH_sly_557 | 2 | 3 | 0.000880411 |
| Saccharum spontaneum | Chr7A | 1 | CH_ssp_441 | 3 | 4 | 0.00000389307 |
| Saccharum spontaneum | Chr7C | 1 | CH_ssp_442 | 3 | 4 | 0.00000389307 |
| Saccharum spontaneum | Chr7D | 1 | CH_ssp_443 | 3 | 4 | 0.00000389307 |
| Setaria viridis | Chr_03 | 1 | CH_svi_30 | 6 | 14 | 0.00000000000000548435 |
| Aegilops tauschii | 4D | 2 | CH_ata_347 | 2 | 3 | 0.000886299 |
| Arabidopsis thaliana | Chr1 | 2 | CH_ath_106 | 3 | 4 | 0.0000000196984 |
| Brachypodium distachyon | Bd1 | 2 | CH_bdi_96 | 3 | 4 | 0.000000228162 |
| Chara braunii | BFEA01000221 | 2 | CH_cbr_31 | 3 | 5 | 0.000000775911 |
| Ceratophyllum demersum | 7 | 2 | CH_cde_58 | 3 | 8 | 0.00000523735 |
| Cenchrus purpureus | GWHAORA00000008 | 2 | CH_cpu_105 | 5 | 9 | 0.00000000000533749 |
| Cenchrus purpureus | GWHAORA00000004 | 2 | CH_cpu_364 | 3 | 3 | 0.000000974792 |
| Digitaria exilis | Dexi_CM05836_chr03B | 2 | CH_dex_109 | 4 | 5 | 0.0000000013324 |
| Eragrostis curvula | 7 | 2 | CH_ecu_242 | 3 | 3 | 0.0000000451 |
| Eragrostis curvula | Contig30 | 2 | CH_ecu_740 | 2 | 3 | 0.000581587 |
| Hordeum vulgare | chr5H | 2 | CH_hvu_457 | 2 | 2 | 0.000852255 |
| Marchantia polymorpha | scaffold_145 | 2 | CH_mpo_16 | 4 | 4 | 0.000000000848827 |
| Miscanthus sinensis | Chr16 | 2 | CH_msi_169 | 3 | 3 | 0.000000256604 |
| Miscanthus sinensis | Chr17 | 2 | CH_msi_254 | 3 | 6 | 0.00000513034 |
| Oryza alta | GWHAZTO00000003 | 2 | CH_oal_184 | 3 | 7 | 0.000000213171 |
| Oryza brachyantha | 3 | 2 | CH_obr_233 | 2 | 3 | 0.000179201 |
| Oryza sativa ssp. indica | Chr3 | 2 | CH_osaindica_89 | 3 | 5 | 0.0000000400317 |
| Oryza sativa Kitaake | Chr3 | 2 | CH_osak_68 | 4 | 5 | 0.00000000000267492 |
| Oryza sativa ssp. japonica | chr03 | 2 | CH_osa_86 | 3 | 5 | 0.0000000418359 |
| Oropetium thomaeum | Chromosome_4 | 2 | CH_oth_252 | 2 | 3 | 0.000640623 |
| Phyllostachys edulis | hic_scaffold_15 | 2 | CH_ped_25 | 6 | 10 | 2.45104e-16 |
| Phyllostachys edulis | hic_scaffold_21 | 2 | CH_ped_80 | 4 | 6 | 0.00000000100434 |
| Panicum hallii | Chr03 | 2 | CH_pha_10 | 7 | 14 | 3.74618e-19 |
| Physcomitrium patens | Chr02 | 2 | CH_ppa_60 | 4 | 38 | 0.0000106341 |
| Physcomitrium patens | Chr01 | 2 | CH_ppa_7 | 5 | 13 | 0.0000000000342481 |
| Populus trichocarpa | Chr10 | 2 | CH_ptr_147 | 4 | 9 | 0.00000000919121 |
| Populus trichocarpa | Chr08 | 2 | CH_ptr_261 | 3 | 6 | 0.00000841518 |
| Sorghum bicolor | Chr10 | 2 | CH_sbi_60 | 4 | 5 | 0.0000000000151456 |
| Secale cereale | GWHASIY00000005 | 2 | CH_sce_233 | 4 | 20 | 0.00000017254 |
| Setaria italica | scaffold_3 | 2 | CH_sit_16 | 7 | 12 | 2.86176e-19 |
| Solanum lycopersicum | SL4.0ch06 | 2 | CH_sly_556 | 2 | 2 | 0.000880411 |
| Solanum lycopersicum | SL4.0ch11 | 2 | CH_sly_557 | 2 | 3 | 0.000880411 |
| Saccharum spontaneum | Chr7A | 2 | CH_ssp_441 | 3 | 4 | 0.00000389307 |
| Saccharum spontaneum | Chr7C | 2 | CH_ssp_442 | 3 | 4 | 0.00000389307 |
| Saccharum spontaneum | Chr7D | 2 | CH_ssp_443 | 3 | 4 | 0.00000389307 |
| Setaria viridis | Chr_03 | 2 | CH_svi_30 | 6 | 14 | 0.00000000000000548435 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |