Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
AagrBONN_evm.TU.Sc2ySwM_117.114 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_362.999 Anthoceros agrestis
Aco000303 Ananas comosus
Aco004480 Ananas comosus
Aco009577 Ananas comosus
Aco013307 Ananas comosus
Aco019729 Ananas comosus
Aco025633 Ananas comosus
Aco029542 Ananas comosus
AET7Gv20009600 Aegilops tauschii
AET7Gv20361900 Aegilops tauschii
AET7Gv20557900 Aegilops tauschii
AET7Gv20862600 Aegilops tauschii
Asa2G01141 Allium sativum
Asa2G01142 Allium sativum
Asa6G03079 Allium sativum
Asa8G03701 Allium sativum
AT1G06290 Arabidopsis thaliana
AT1G06310 Arabidopsis thaliana
AT2G35690 Arabidopsis thaliana
AT3G06690 Arabidopsis thaliana
AT4G16760 Arabidopsis thaliana
AT5G65110 Arabidopsis thaliana
ATR0057G009 Amborella trichopoda
ATR0564G071 Amborella trichopoda
ATR0602G078 Amborella trichopoda
Bradi1g52320 Brachypodium distachyon
Bradi3g22660 Brachypodium distachyon
Bradi4g14090 Brachypodium distachyon
CALSI_Maker00011346 Calamus simplicifolius
CALSI_Maker00017757 Calamus simplicifolius
CALSI_Maker00043380 Calamus simplicifolius
CALSI_Maker00043846 Calamus simplicifolius
CBR_g12337 Chara braunii
CBR_g12338 Chara braunii
CBR_g30062 Chara braunii
CDE02G3830 Ceratophyllum demersum
CDE08G0847 Ceratophyllum demersum
CDE10G0713 Ceratophyllum demersum
CDE10G1075 Ceratophyllum demersum
Cre05.g232002 Chlamydomonas reinhardtii
Cre11.g467350 Chlamydomonas reinhardtii
Cre16.g687350 Chlamydomonas reinhardtii
Cre16.g689050 Chlamydomonas reinhardtii
DDU102G0265 Dioscorea dumetorum
DDU550G0290 Dioscorea dumetorum
DDU556G0469 Dioscorea dumetorum
DDU643G0095 Dioscorea dumetorum
Dexi3A01G0028820 Digitaria exilis
Dexi3B01G0029910 Digitaria exilis
Dexi4A01G0000180 Digitaria exilis
Dexi4A01G0004480 Digitaria exilis
Dexi4B01G0000170 Digitaria exilis
Dexi4B01G0006440 Digitaria exilis
Dexi8A01G0014630 Digitaria exilis
DexiUA01G0006910 Digitaria exilis
DexiUA01G0006950 Digitaria exilis
DexiUA01G0019220 Digitaria exilis
EJB05_20635 Eragrostis curvula
EJB05_26846 Eragrostis curvula
EJB05_26865 Eragrostis curvula
EJB05_38633 Eragrostis curvula
EJB05_44217 Eragrostis curvula
EJB05_44219 Eragrostis curvula
EJB05_46621 Eragrostis curvula
EJB05_46622 Eragrostis curvula
evm.TU.AsparagusV1_01.1779.V1.1 Asparagus officinalis
evm.TU.AsparagusV1_01.3131.V1.1 Asparagus officinalis
evm.TU.AsparagusV1_01.3132.V1.1 Asparagus officinalis
evm.TU.AsparagusV1_04.2470.V1.1 Asparagus officinalis
evm.TU.AsparagusV1_07.2628.V1.1 Asparagus officinalis
evm.TU.AsparagusV1_08.336.V1.1 Asparagus officinalis
Glyma.01G207500 Glycine max
Glyma.05G062200 Glycine max
Glyma.05G180100 Glycine max
Glyma.06G285400 Glycine max
Glyma.11G035200 Glycine max
Glyma.12G120300 Glycine max
Glyma.14G125300 Glycine max
Glyma.17G144000 Glycine max
Glyma.17G144051 Glycine max
GWHGAORA001157 Cenchrus purpureus
GWHGAORA001225 Cenchrus purpureus
GWHGAORA013096 Cenchrus purpureus
GWHGAORA017243 Cenchrus purpureus
GWHGAORA017259 Cenchrus purpureus
GWHGAORA017728 Cenchrus purpureus
GWHGAORA043403 Cenchrus purpureus
GWHGAORA053162 Cenchrus purpureus
GWHGAORA053517 Cenchrus purpureus
GWHGAORA053987 Cenchrus purpureus
GWHGAORA056922 Cenchrus purpureus
GWHGASIY020480 Secale cereale
GWHGASIY021412 Secale cereale
GWHGASIY021418 Secale cereale
GWHGASIY035305 Secale cereale
GWHGASIY039883 Secale cereale
GWHGASIY042653 Secale cereale
GWHGAZTO000124 Oryza alta
GWHGAZTO012679 Oryza alta
GWHGAZTO033576 Oryza alta
GWHGAZTO036558 Oryza alta
GWHGAZTO038766 Oryza alta
GWHGAZTO038767 Oryza alta
GWHGAZTO064727 Oryza alta
GWHGAZTO085453 Oryza alta
GWHGAZTO087440 Oryza alta
Horvu_MOREX_7H01G003600 Hordeum vulgare
Horvu_MOREX_7H01G157400 Hordeum vulgare
Horvu_MOREX_7H01G271000 Hordeum vulgare
Horvu_MOREX_7H01G486100 Hordeum vulgare
HPP92_009241 Vanilla planifolia
HPP92_022429 Vanilla planifolia
HPP92_027388 Vanilla planifolia
Ma02_g16990 Musa acuminata
Ma02_g24010 Musa acuminata
Ma06_g07500 Musa acuminata
Ma07_g07450 Musa acuminata
Mapoly0007s0119 Marchantia polymorpha
Mapoly0014s0189 Marchantia polymorpha
Mapoly0169s0009 Marchantia polymorpha
MBI05_g34471_MAGBIO Magnolia biondii
MBI07_g06445_MAGBIO Magnolia biondii
MCO09G755 Micromonas commoda
MCO11G871 Micromonas commoda
MCO15G066 Micromonas commoda
Misin05G340300 Miscanthus sinensis
Misin06G321500 Miscanthus sinensis
Misin09G169800 Miscanthus sinensis
Misin10G189900 Miscanthus sinensis
Misin19G005700 Miscanthus sinensis
Misin19G052000 Miscanthus sinensis
Misin19G052200 Miscanthus sinensis
MisinT046800 Miscanthus sinensis
OB06G10220 Oryza brachyantha
OB06G22360 Oryza brachyantha
OB11G24760 Oryza brachyantha
Os06g0103500 Oryza sativa ssp. japonica
Os06g0354500 Oryza sativa ssp. japonica
Os11g0605500 Oryza sativa ssp. japonica
OsKitaake06g001700 Oryza sativa Kitaake
OsKitaake06g149500 Oryza sativa Kitaake
OsKitaake11g192200 Oryza sativa Kitaake
OsR498G0611472700.01 Oryza sativa ssp. indica
OsR498G0612489500.01 Oryza sativa ssp. indica
OsR498G1120483200.01 Oryza sativa ssp. indica
Ot_Chr10_g16852 Oropetium thomaeum
Ot_Chr2_g06256 Oropetium thomaeum
p5.00_sc00001_p0537 Elaeis guineensis
p5.00_sc00013_p0012 Elaeis guineensis
p5.00_sc00054_p0036 Elaeis guineensis
p5.00_sc00062_p0041 Elaeis guineensis
Pahal.4G198000 Panicum hallii
Pahal.4G317200 Panicum hallii
Pahal.4G358000 Panicum hallii
Pahal.8G228000 Panicum hallii
PH02Gene20086 Phyllostachys edulis
PH02Gene20843 Phyllostachys edulis
PH02Gene24578 Phyllostachys edulis
PH02Gene24580 Phyllostachys edulis
PH02Gene27283 Phyllostachys edulis
PH02Gene34202 Phyllostachys edulis
PH02Gene46642 Phyllostachys edulis
Potri.001G155500 Populus trichocarpa
Potri.003G079200 Populus trichocarpa
Potri.005G077600 Populus trichocarpa
Potri.007G090400 Populus trichocarpa
Potri.013G123500 Populus trichocarpa
Potri.019G092600 Populus trichocarpa
Pp3c13_22370 Physcomitrium patens
Pp3c14_14860 Physcomitrium patens
Pp3c26_540 Physcomitrium patens
Pp3c5_8300 Physcomitrium patens
Pp3c6_21500 Physcomitrium patens
PRCOL_00006639 Prasinoderma coloniale
SEGI_01087 Sequoiadendron giganteum
SEGI_03845 Sequoiadendron giganteum
SEGI_04770 Sequoiadendron giganteum
SEGI_09162 Sequoiadendron giganteum
SEGI_12300 Sequoiadendron giganteum
SEGI_12780 Sequoiadendron giganteum
SEGI_20270 Sequoiadendron giganteum
SEGI_20994 Sequoiadendron giganteum
SEGI_21730 Sequoiadendron giganteum
SEGI_25110 Sequoiadendron giganteum
SEGI_29810 Sequoiadendron giganteum
SEGI_33260 Sequoiadendron giganteum
SEGI_35715 Sequoiadendron giganteum
SEGI_36182 Sequoiadendron giganteum
Seita.4G002200 Setaria italica
Seita.4G065000 Setaria italica
Seita.4G154600 Setaria italica
Seita.8G183900 Setaria italica
Sevir.2G081900 Setaria viridis
Sevir.4G002600 Setaria viridis
Sevir.4G062700 Setaria viridis
Sevir.4G121300 Setaria viridis
Sevir.8G192600 Setaria viridis
Sevir.9G347900 Setaria viridis
SMO200G0037 Selaginella moellendorffii
SMO266G0061 Selaginella moellendorffii
SMO358G0542 Selaginella moellendorffii
Sobic.003G354400 Sorghum bicolor
Sobic.005G181000 Sorghum bicolor
Sobic.010G001900 Sorghum bicolor
Sobic.010G049100 Sorghum bicolor
Solyc04g054890.3 Solanum lycopersicum
Solyc08g078400.3 Solanum lycopersicum
Solyc10g008110.4 Solanum lycopersicum
Spipo14G0024600 Spirodela polyrhiza
Spipo16G0000800 Spirodela polyrhiza
Spipo20G0028000 Spirodela polyrhiza
Sspon.03G0002780-3C Saccharum spontaneum
Sspon.06G0016830-1A Saccharum spontaneum
Sspon.06G0016830-1P Saccharum spontaneum
Sspon.06G0016830-2B Saccharum spontaneum
Sspon.06G0016830-3D Saccharum spontaneum
Sspon.08G0014240-1A Saccharum spontaneum
Sspon.08G0014240-2B Saccharum spontaneum
Sspon.08G0014240-3D Saccharum spontaneum
Sspon.08G0024540-1B Saccharum spontaneum
Sspon.08G0024540-2D Saccharum spontaneum
TraesCS4A03G0472600 Triticum aestivum
TraesCS4A03G1243600 Triticum aestivum
TraesCS7A03G0008400 Triticum aestivum
TraesCS7A03G0332400 Triticum aestivum
TraesCS7A03G0519100 Triticum aestivum
TraesCS7A03G0833400 Triticum aestivum
TraesCS7B03G0116500 Triticum aestivum
TraesCS7B03G0337300 Triticum aestivum
TraesCS7B03G0691000 Triticum aestivum
TraesCS7D03G0009700 Triticum aestivum
TraesCS7D03G0321800 Triticum aestivum
TraesCS7D03G0501700 Triticum aestivum
TraesCS7D03G0818300 Triticum aestivum
TRIDC4AG027780 Triticum dicoccoides
TRIDC4AG071260 Triticum dicoccoides
TRIDC7AG000640 Triticum dicoccoides
TRIDC7AG017070 Triticum dicoccoides
TRIDC7AG028440 Triticum dicoccoides
TRIDC7AG046560 Triticum dicoccoides
TRIDC7BG006480 Triticum dicoccoides
TRIDC7BG020080 Triticum dicoccoides
TRIDC7BG041140 Triticum dicoccoides
TRITD3Av1G280590 Triticum turgidum
TRITD4Av1G136240 Triticum turgidum
TRITD4Av1G262030 Triticum turgidum
TRITD7Av1G000290 Triticum turgidum
TRITD7Av1G042290 Triticum turgidum
TRITD7Av1G080340 Triticum turgidum
TRITD7Av1G181270 Triticum turgidum
TRITD7Bv1G016030 Triticum turgidum
TRITD7Bv1G055310 Triticum turgidum
TRITD7Bv1G142090 Triticum turgidum
V3.Lp_chr4_0G14836 Lolium perenne
V3.Lp_chr7_0.1G42 Lolium perenne
V3.Lp_chr7_0.1G8296 Lolium perenne
V3.Lp_chr7_0.1G8300 Lolium perenne
Zjn_sc00001.1.g10540.1.sm.mkhc Zoysia japonica ssp. nagirizaki
Zjn_sc00005.1.g01220.1.am.mk Zoysia japonica ssp. nagirizaki
Zjn_sc00041.1.g00280.1.am.mkhc Zoysia japonica ssp. nagirizaki
Zjn_sc00096.1.g01760.1.am.mkhc Zoysia japonica ssp. nagirizaki
Zjn_sc00141.1.g01070.1.am.mkhc Zoysia japonica ssp. nagirizaki
Zjn_sc00148.1.g00220.1.sm.mk Zoysia japonica ssp. nagirizaki
Zjn_sc00184.1.g00260.1.sm.mkhc Zoysia japonica ssp. nagirizaki
Zm00001eb016980 Zea mays B73
Zm00001eb083480 Zea mays B73
Zm00001eb148110 Zea mays B73
Zm00001eb167230 Zea mays B73
Zm00001eb200160 Zea mays B73
Zm00001eb259720 Zea mays B73
Zm00001eb376020 Zea mays B73
Zm00001eb379490 Zea mays B73
Zm00007a00006603 Zea mays B104
Zm00007a00007218 Zea mays B104
Zm00007a00008480 Zea mays B104
Zm00007a00017332 Zea mays B104
Zm00007a00030110 Zea mays B104
Zm00007a00030703 Zea mays B104
Zm00007a00033951 Zea mays B104
Zm00007a00046347 Zea mays B104
Zosma03g01860 Zostera marina
Zosma03g11540 Zostera marina
Zosma03g33810 Zostera marina
Zosma05g01090 Zostera marina
Zosma06g05480 Zostera marina
Zosma06g05490 Zostera marina
Zosma237g00020 Zostera marina

User provided reference genes

Program Settings