Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zjn_sc00138.1.g00980.1.am.mkhc Zoysia japonica ssp. nagirizaki HOM05M000517 ORTHO05M000423 2.9e-66 254.2 118 100.0
Zjn_sc00047.1.g00690.1.am.mkhc Zoysia japonica ssp. nagirizaki HOM05M000517 ORTHO05M000423 1.3e-55 218.8 119 88.2
EJB05_24215 Eragrostis curvula HOM05M000517 ORTHO05M000423 5.1e-39 163.7 78 94.9
OB02G21110 Oryza brachyantha HOM05M000517 ORTHO05M000423 1.1e-38 162.5 78 92.3
GWHGAZTO069401 Oryza alta HOM05M000517 ORTHO05M000423 1.5e-38 162.2 78 92.3
V3.Lp_chr6_0G8372 Lolium perenne HOM05M000517 ORTHO05M000423 1.9e-38 161.8 78 92.3
OsKitaake02g127000 Oryza sativa Kitaake HOM05M000517 ORTHO05M000423 1.9e-38 161.8 77 92.2
OsR498G0203432300.01 Oryza sativa ssp. indica HOM05M000517 ORTHO05M000423 1.9e-38 161.8 77 92.2
Os02g0286200 Oryza sativa ssp. japonica HOM05M000517 ORTHO05M000423 1.9e-38 161.8 77 92.2
GWHGAORA016236 Cenchrus purpureus HOM05M000517 ORTHO05M000423 2.5e-38 161.4 76 93.4
Pahal.1G130800 Panicum hallii HOM05M000517 ORTHO05M000423 2.5e-38 161.4 76 93.4
Seita.1G128800 Setaria italica HOM05M000517 ORTHO05M000423 2.5e-38 161.4 76 93.4
Sevir.1G127400 Setaria viridis HOM05M000517 ORTHO05M000423 2.5e-38 161.4 76 93.4
PH02Gene49294 Phyllostachys edulis HOM05M000517 ORTHO05M000423 3.3e-38 161.0 78 92.3
Bradi3g10550 Brachypodium distachyon HOM05M000517 ORTHO05M000423 4.3e-38 160.6 78 91.0
Zm00001eb203780 Zea mays B73 HOM05M000517 ORTHO05M000423 5.6e-38 160.2 78 92.3
Zm00007a00014939 Zea mays B104 HOM05M000517 ORTHO05M000423 5.6e-38 160.2 78 92.3
Sspon.04G0013320-1A Saccharum spontaneum HOM05M000517 ORTHO05M000423 7.3e-38 159.8 77 92.2
AET3Gv20429500 Aegilops tauschii HOM05M000517 ORTHO05M000423 9.6e-38 159.5 78 89.7
TraesCS3D03G0422600 Triticum aestivum HOM05M000517 ORTHO05M000423 9.6e-38 159.5 78 89.7
Misin07G120400 Miscanthus sinensis HOM05M000517 ORTHO05M000423 1.3e-37 159.1 78 89.7
GWHGASIY014769 Secale cereale HOM05M000517 ORTHO05M000423 1.3e-37 159.1 78 89.7
Horvu_MOREX_3H01G256800 Hordeum vulgare HOM05M000517 ORTHO05M000423 1.6e-37 158.7 78 89.7
TraesCS3B03G0531600 Triticum aestivum HOM05M000517 ORTHO05M000423 1.6e-37 158.7 78 89.7
TRIDC3BG030230 Triticum dicoccoides HOM05M000517 ORTHO05M000423 1.6e-37 158.7 78 89.7
TRITD3Bv1G095580 Triticum turgidum HOM05M000517 ORTHO05M000423 1.6e-37 158.7 78 89.7
GWHGAZTO017747 Oryza alta HOM05M000517 ORTHO05M000423 2.1e-37 158.3 77 90.9
Ot_Chr1_gn31178 Oropetium thomaeum HOM05M000517 ORTHO05M000423 2.8e-37 157.9 80 92.5
Sobic.004G129100 Sorghum bicolor HOM05M000517 ORTHO05M000423 8.1e-37 156.4 78 91.0
Misin08G124900 Miscanthus sinensis HOM05M000517 ORTHO05M000423 1.4e-36 155.6 78 89.7
TraesCS3A03G0461700 Triticum aestivum HOM05M000517 ORTHO05M000423 1.4e-36 155.6 78 88.5
TRIDC3AG026810 Triticum dicoccoides HOM05M000517 ORTHO05M000423 1.4e-36 155.6 78 88.5
TRITD3Av1G098210 Triticum turgidum HOM05M000517 ORTHO05M000423 1.4e-36 155.6 78 88.5
Aco004443 Ananas comosus HOM05M000517 ORTHO05M000423 7.6e-27 123.2 78 66.7
p5.00_sc00116_p0039 Elaeis guineensis HOM05M000517 ORTHO05M000423 3.8e-26 120.9 78 67.9
CALSI_Maker00023896 Calamus simplicifolius HOM05M000517 ORTHO05M000423 8.4e-26 119.8 78 64.1
CALSI_Maker00037364 Calamus simplicifolius HOM05M000517 ORTHO05M000423 8.4e-26 119.8 78 64.1
p5.00_sc00001_p0465 Elaeis guineensis HOM05M000517 ORTHO05M000423 5.5e-25 117.1 76 64.5
HPP92_027382 Vanilla planifolia HOM05M000517 ORTHO05M000423 9.3e-25 116.3 76 64.5
DDU118G0015 Dioscorea dumetorum HOM05M000517 ORTHO05M000423 2.7e-24 114.8 77 63.6
p5.00_sc00166_p0046 Elaeis guineensis HOM05M000517 ORTHO05M000423 2.3e-23 111.7 78 60.3
MBI06_g08482_MAGBIO Magnolia biondii HOM05M000517 ORTHO05M000423 2.3e-23 111.7 78 64.1
evm.TU.AsparagusV1_06.1130.V1.1 Asparagus officinalis HOM05M000517 ORTHO05M000423 3.9e-23 110.9 80 62.5
evm.TU.AsparagusV1_06.469.V1.1 Asparagus officinalis HOM05M000517 ORTHO05M000423 5.1e-23 110.5 80 62.5
HPP92_024172 Vanilla planifolia HOM05M000517 ORTHO05M000423 8.7e-23 109.8 80 62.5
Ma07_g26560 Musa acuminata HOM05M000517 ORTHO05M000423 1.1e-22 109.4 78 64.1
Ma10_g26200 Musa acuminata HOM05M000517 ORTHO05M000423 1.5e-22 109.0 76 61.8
CALSI_Maker00027219 Calamus simplicifolius HOM05M000517 ORTHO05M000423 1.1e-20 102.8 78 55.1
Glyma.05G217400 Glycine max HOM05M000517 ORTHO05M000423 1.1e-20 102.8 78 56.4
Glyma.08G023400 Glycine max HOM05M000517 ORTHO05M000423 1.1e-20 102.8 78 56.4
Potri.001G090500 Populus trichocarpa HOM05M000517 ORTHO05M000423 1.1e-20 102.8 78 53.8
Sspon.04G0013320-2B Saccharum spontaneum HOM05M000517 ORTHO05M000423 1.4e-20 102.4 49 98.0
ATR0602G114 Amborella trichopoda HOM05M000517 ORTHO05M000423 1.8e-20 102.1 78 56.4
Potri.003G141100 Populus trichocarpa HOM05M000517 ORTHO05M000423 2.4e-20 101.7 78 53.8
Spipo26G0029600 Spirodela polyrhiza HOM05M000517 ORTHO05M000423 3.1e-20 101.3 76 55.3
Zosma05g12020 Zostera marina HOM05M000517 ORTHO05M000423 1.5e-19 99.0 80 58.8
Sspon.04G0013320-1P Saccharum spontaneum HOM05M000517 ORTHO05M000423 4.5e-19 97.4 57 82.5
GWHGAORA044634 Cenchrus purpureus HOM05M000517 ORTHO05M000423 1.0e-18 96.3 80 55.0
PH02Gene27438 Phyllostachys edulis HOM05M000517 ORTHO05M000423 1.7e-18 95.5 81 56.8
Asa8G04886 Allium sativum HOM05M000517 ORTHO05M000423 2.2e-18 95.1 74 56.8
Asa8G04887 Allium sativum HOM05M000517 ORTHO05M000423 2.2e-18 95.1 74 56.8
Ot_Chr3_g26336 Oropetium thomaeum HOM05M000517 ORTHO05M000423 2.2e-18 95.1 79 54.4
Bradi2g48380 Brachypodium distachyon HOM05M000517 ORTHO05M000423 4.9e-18 94.0 81 55.6
Pahal.5G178800 Panicum hallii HOM05M000517 ORTHO05M000423 4.9e-18 94.0 80 55.0
Dexi5A01G0025380 Digitaria exilis HOM05M000517 ORTHO05M000423 6.5e-18 93.6 81 55.6
EJB05_17161 Eragrostis curvula HOM05M000517 ORTHO05M000423 6.5e-18 93.6 78 52.6
Glyma.01G226000 Glycine max HOM05M000517 ORTHO05M000423 6.5e-18 93.6 77 55.8
Solyc08g082450.3 Solanum lycopersicum HOM05M000517 ORTHO05M000423 6.5e-18 93.6 79 51.9
Zm00001eb154610 Zea mays B73 HOM05M000517 ORTHO05M000423 6.5e-18 93.6 80 53.8
Zm00007a00022196 Zea mays B104 HOM05M000517 ORTHO05M000423 8.4e-18 93.2 79 53.2
CDE10G0529 Ceratophyllum demersum HOM05M000517 ORTHO05M000423 1.1e-17 92.8 78 52.6
Misin06G232400 Miscanthus sinensis HOM05M000517 ORTHO05M000423 1.1e-17 92.8 84 51.2
Seita.5G299200 Setaria italica HOM05M000517 ORTHO05M000423 1.4e-17 92.4 80 53.8
Sevir.5G302000 Setaria viridis HOM05M000517 ORTHO05M000423 1.4e-17 92.4 80 53.8
OB01G38050 Oryza brachyantha HOM05M000517 ORTHO05M000423 1.9e-17 92.0 79 54.4
Dexi5B01G0025600 Digitaria exilis HOM05M000517 ORTHO05M000423 2.5e-17 91.7 80 52.5
evm.TU.AsparagusV1_05.1992.V1.1 Asparagus officinalis HOM05M000517 ORTHO05M000423 3.2e-17 91.3 76 53.9
OsR498G0101907500.01 Oryza sativa ssp. indica HOM05M000517 ORTHO05M000423 4.2e-17 90.9 77 53.2
AET3Gv20680800 Aegilops tauschii HOM05M000517 ORTHO05M000423 5.5e-17 90.5 79 53.2
GWHGAZTO057123 Oryza alta HOM05M000517 ORTHO05M000423 5.5e-17 90.5 79 53.2
TraesCS3D03G0662600 Triticum aestivum HOM05M000517 ORTHO05M000423 5.5e-17 90.5 79 53.2
GWHGAORA031818 Cenchrus purpureus HOM05M000517 ORTHO05M000423 7.1e-17 90.1 80 51.2
TraesCS3A03G0719300 Triticum aestivum HOM05M000517 ORTHO05M000423 7.1e-17 90.1 80 52.5
TraesCS3B03G0825000 Triticum aestivum HOM05M000517 ORTHO05M000423 7.1e-17 90.1 80 52.5
TRIDC3BG048480 Triticum dicoccoides HOM05M000517 ORTHO05M000423 7.1e-17 90.1 80 52.5
TRITD3Av1G187130 Triticum turgidum HOM05M000517 ORTHO05M000423 7.1e-17 90.1 80 52.5
TRITD3Bv1G170050 Triticum turgidum HOM05M000517 ORTHO05M000423 7.1e-17 90.1 80 52.5
Horvu_MOREX_3H01G406000 Hordeum vulgare HOM05M000517 ORTHO05M000423 9.3e-17 89.7 80 52.5
OsKitaake01g305300 Oryza sativa Kitaake HOM05M000517 ORTHO05M000423 9.3e-17 89.7 77 51.9
Os01g0719900 Oryza sativa ssp. japonica HOM05M000517 ORTHO05M000423 9.3e-17 89.7 77 51.9
GWHGASIY015965 Secale cereale HOM05M000517 ORTHO05M000423 9.3e-17 89.7 80 52.5
GWHGASIY020201 Secale cereale HOM05M000517 ORTHO05M000423 9.3e-17 89.7 80 52.5
V3.Lp_chr3_0G16306 Lolium perenne HOM05M000517 ORTHO05M000423 2.1e-16 88.6 82 53.7
Zjn_sc00011.1.g01940.1.sm.mk Zoysia japonica ssp. nagirizaki HOM05M000517 ORTHO05M000423 2.1e-16 88.6 81 53.1
GWHGAZTO004767 Oryza alta HOM05M005895 ORTHO05M007555 2.7e-16 88.2 79 51.9
Sobic.003G278800 Sorghum bicolor HOM05M000517 ORTHO05M000423 2.7e-16 88.2 82 52.4
Misin05G254000 Miscanthus sinensis HOM05M000517 ORTHO05M000423 3.9e-15 84.3 75 52.0
SEGI_35965 Sequoiadendron giganteum HOM05M000517 ORTHO05M000423 2.5e-14 81.6 72 47.2
Asa8G04889 Allium sativum HOM05M000517 ORTHO05M000423 3.3e-14 81.3 74 47.3
Asa8G04891 Allium sativum HOM05M000517 ORTHO05M000423 3.3e-14 81.3 74 47.3
SEGI_05951 Sequoiadendron giganteum HOM05M000517 ORTHO05M000423 3.3e-14 81.3 73 49.3
SEGI_03355 Sequoiadendron giganteum HOM05M000517 ORTHO05M000423 5.7e-14 80.5 75 45.3
SEGI_22653 Sequoiadendron giganteum HOM05M000517 ORTHO05M000423 5.7e-14 80.5 75 45.3
Asa8G04879 Allium sativum HOM05M000517 ORTHO05M000423 7.4e-14 80.1 74 45.9
PH02Gene25359 Phyllostachys edulis HOM05M000517 ORTHO05M000423 7.4e-14 80.1 77 49.4
Solyc03g083370.3 Solanum lycopersicum HOM05M000517 ORTHO05M000423 7.4e-14 80.1 77 48.1
Asa8G04881 Allium sativum HOM05M000517 ORTHO05M000423 1.3e-13 79.3 74 45.9
Asa8G04892 Allium sativum HOM05M000517 ORTHO05M000423 1.3e-13 79.3 75 46.7
SEGI_38711 Sequoiadendron giganteum HOM05M000517 ORTHO05M000423 1.3e-13 79.3 77 44.2
SEGI_30212 Sequoiadendron giganteum HOM05M000517 ORTHO05M000423 1.6e-13 79.0 72 41.7
AT5G24230 Arabidopsis thaliana HOM05M000517 ORTHO05M000423 4.8e-13 77.4 81 44.4
Spipo26G0029400 Spirodela polyrhiza HOM05M000517 ORTHO05M000423 4.8e-13 77.4 76 44.7
AT4G10955 Arabidopsis thaliana HOM05M000517 ORTHO05M000423 1.1e-12 76.3 76 44.7
Glyma.06G128400 Glycine max HOM05M000517 ORTHO05M000423 1.1e-12 76.3 85 42.4
SEGI_37213 Sequoiadendron giganteum HOM05M000517 ORTHO05M000423 1.1e-12 76.3 77 45.5
CALSI_Maker00027230 Calamus simplicifolius HOM05M000517 ORTHO05M000423 5.3e-12 73.9 55 60.0
GWHGAORA034032 Cenchrus purpureus HOM05M000517 ORTHO05M000423 5.3e-12 73.9 62 54.8
AT2G05260 Arabidopsis thaliana HOM05M000517 ORTHO05M000423 9.0e-12 73.2 84 41.7
SEGI_23288 Sequoiadendron giganteum HOM05M000517 ORTHO05M000423 1.2e-11 72.8 67 47.8
p5.00_sc00166_p0049 Elaeis guineensis HOM05M000517 ORTHO05M000423 2.6e-11 71.6 77 45.5
Spipo26G0029500 Spirodela polyrhiza HOM05M000517 ORTHO05M000423 3.4e-11 71.2 76 46.1
Asa8G05893 Allium sativum HOM05M010489 ORTHO05M012041 2.9e-10 68.2 41 75.6
TRIDC3AG042500 Triticum dicoccoides HOM05M000517 ORTHO05M000423 5.0e-10 67.4 45 60.0
Spipo0G0099000 Spirodela polyrhiza HOM05M000517 ORTHO05M000423 8.4e-10 66.6 74 40.5
Spipo0G0098900 Spirodela polyrhiza HOM05M000517 ORTHO05M000423 1.4e-09 65.9 67 41.8
Spipo0G0130200 Spirodela polyrhiza HOM05M000517 ORTHO05M000423 3.2e-09 64.7 66 47.0
p5.00_sc00166_p0047 Elaeis guineensis HOM05M000517 ORTHO05M000423 5.5e-09 63.9 78 46.2
V3.Lp_chr4_0G8492 Lolium perenne HOM05M000517 ORTHO05M000423 3.5e-08 61.2 84 39.3
V3.Lp_chr4_0G8506 Lolium perenne HOM05M000517 ORTHO05M000423 3.5e-08 61.2 84 39.3
Spipo0G0072600 Spirodela polyrhiza HOM05M000517 ORTHO05M000423 3.5e-08 61.2 74 36.5
AT5G24180 Arabidopsis thaliana HOM05M000517 ORTHO05M000423 1.0e-07 59.7 74 37.8
PH02Gene43924 Phyllostachys edulis HOM05M000517 ORTHO05M000423 1.8e-07 58.9 77 41.6
p5.00_sc00166_p0048 Elaeis guineensis HOM05M000517 ORTHO05M000423 2.3e-07 58.5 77 44.2
PH02Gene38861 Phyllostachys edulis HOM05M000517 ORTHO05M000423 3.9e-07 57.8 66 45.5
PH02Gene51165 Phyllostachys edulis HOM05M000517 ORTHO05M000423 3.9e-07 57.8 66 45.5
AT5G24190 Arabidopsis thaliana HOM05M000517 ORTHO05M000423 5.1e-07 57.4 79 34.2
AT5G24220 Arabidopsis thaliana HOM05M000517 ORTHO05M000423 5.1e-07 57.4 65 40.0
V3.Lp_chr3_0G3874 Lolium perenne HOM05M000517 ORTHO05M000423 5.1e-07 57.4 84 35.7
Bradi1g25890 Brachypodium distachyon HOM05M000517 ORTHO05M000423 1.1e-06 56.2 59 47.5
V3.Lp_chr2_0G20470 Lolium perenne HOM05M000517 ORTHO05M000423 1.9e-06 55.5 71 45.1
TraesCS4B03G0874600 Triticum aestivum HOM05M000517 ORTHO05M000423 3.3e-06 54.7 67 38.8
TRITD2Bv1G086190 Triticum turgidum HOM05M000517 ORTHO05M000423 3.3e-06 54.7 71 42.3
TRITD4Bv1G190150 Triticum turgidum HOM05M000517 ORTHO05M000423 3.3e-06 54.7 67 38.8
TraesCS5A03G1187700 Triticum aestivum HOM05M000517 ORTHO05M000423 5.7e-06 53.9 68 39.7
Horvu_MOREX_4H01G473400 Hordeum vulgare HOM05M000517 ORTHO05M000423 7.4e-06 53.5 67 40.3
GWHGASIY029761 Secale cereale HOM05M000517 ORTHO05M000423 7.4e-06 53.5 67 38.8
GWHGASIY029906 Secale cereale HOM05M000517 ORTHO05M000423 7.4e-06 53.5 67 38.8
AET4Gv20787700 Aegilops tauschii HOM05M000517 ORTHO05M000423 9.7e-06 53.1 67 38.8
SEGI_11004 Sequoiadendron giganteum HOM05M000517 ORTHO05M000423 9.7e-06 53.1 57 36.8
TraesCS4D03G0771100 Triticum aestivum HOM05M000517 ORTHO05M000423 9.7e-06 53.1 67 38.8


User provided reference genes

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