Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zjn_sc00067.1.g00140.1.am.mkhc Zoysia japonica ssp. nagirizaki HOM05M002609 ORTHO05M003967 6.4e-293 1009.2 500 100.0
Sevir.8G015500 Setaria viridis HOM05M002609 ORTHO05M003967 2.4e-183 645.2 1119 40.1
EJB05_03016 Eragrostis curvula HOM05M002609 ORTHO05M003967 1.2e-182 642.9 1112 40.2
EJB05_29971 Eragrostis curvula HOM05M002609 ORTHO05M003967 1.0e-181 639.8 1118 40.0
Ot_Chr2_gn32819 Oropetium thomaeum HOM05M002609 ORTHO05M003967 1.3e-181 639.4 1118 40.3
Pahal.3G004900 Panicum hallii HOM05M002609 ORTHO05M003967 3.3e-180 634.8 1118 39.7
Seita.7G328900 Setaria italica HOM05M002609 ORTHO05M003967 4.3e-180 634.4 1118 39.8
Sevir.7G338000 Setaria viridis HOM05M002609 ORTHO05M003967 4.3e-180 634.4 1118 39.8
Seita.8G016500 Setaria italica HOM05M002609 ORTHO05M003967 5.6e-180 634.0 1124 39.9
Pahal.8G005800 Panicum hallii HOM05M002609 ORTHO05M003967 9.6e-180 633.3 1118 39.7
GWHGAORA043133 Cenchrus purpureus HOM05M002609 ORTHO05M003967 5.3e-178 627.5 1120 39.3
OsKitaake11g003900 Oryza sativa Kitaake HOM05M002609 ORTHO05M003967 1.2e-177 626.3 1118 39.1
GWHGAORA040255 Cenchrus purpureus HOM05M002609 ORTHO05M003967 2.0e-177 625.5 1120 39.3
Horvu_MOREX_5H01G257300 Hordeum vulgare HOM05M002609 ORTHO05M003967 2.0e-177 625.5 1116 39.4
GWHGAZTO013351 Oryza alta HOM05M002609 ORTHO05M003967 2.6e-177 625.2 1119 39.1
PH02Gene17508 Phyllostachys edulis HOM05M002609 ORTHO05M003967 9.9e-177 623.2 1119 39.4
GWHGASIY025510 Secale cereale HOM05M002609 ORTHO05M003967 9.9e-177 623.2 1117 39.3
GWHGASIY026624 Secale cereale HOM05M002609 ORTHO05M003967 9.9e-177 623.2 1117 39.3
GWHGASIY010794 Secale cereale HOM05M002609 ORTHO05M003967 1.3e-176 622.9 1116 39.3
TRIDC5AG025000 Triticum dicoccoides HOM05M002609 ORTHO05M003967 1.3e-176 622.9 1116 39.3
GWHGAZTO010109 Oryza alta HOM05M002609 ORTHO05M003967 1.7e-176 622.5 1120 38.9
TraesCS5B03G0409000 Triticum aestivum HOM05M002609 ORTHO05M003967 1.7e-176 622.5 1117 39.3
TRIDC5BG026250 Triticum dicoccoides HOM05M002609 ORTHO05M003967 1.7e-176 622.5 1117 39.3
AET5Gv20384700 Aegilops tauschii HOM05M002609 ORTHO05M003967 2.2e-176 622.1 1118 39.4
TraesCS5D03G0359500 Triticum aestivum HOM05M002609 ORTHO05M003967 4.9e-176 620.9 1116 39.1
OsKitaake12g007800 Oryza sativa Kitaake HOM05M002609 ORTHO05M003967 1.4e-175 619.4 1118 38.9
Os12g0110000 Oryza sativa ssp. japonica HOM05M002609 ORTHO05M003967 1.4e-175 619.4 1118 38.9
GWHGAORA010820 Cenchrus purpureus HOM05M002609 ORTHO05M003967 2.4e-175 618.6 1118 38.8
OsR498G1220814600.01 Oryza sativa ssp. indica HOM05M002609 ORTHO05M003967 7.1e-175 617.1 1119 38.8
GWHGAORA054706 Cenchrus purpureus HOM05M002609 ORTHO05M003967 1.2e-174 616.3 1122 38.8
GWHGAORA026409 Cenchrus purpureus HOM05M002609 ORTHO05M003967 1.6e-174 615.9 1122 38.9
Bradi4g44667 Brachypodium distachyon HOM05M002609 ORTHO05M003967 3.5e-174 614.8 1121 38.6
OB0047G10030 Oryza brachyantha HOM05M002609 ORTHO05M003967 7.9e-174 613.6 1120 38.4
V3.Lp_chr5_0G8880 Lolium perenne HOM05M002609 ORTHO05M003967 1.8e-173 612.5 1115 38.7
TRITD5Bv1G093610 Triticum turgidum HOM05M002609 ORTHO05M003967 1.8e-173 612.5 1116 39.1
Zjn_sc00167.1.g00020.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM05M002609 ORTHO05M012823 1.8e-173 612.5 528 65.9
Dexi3A01G0026710 Digitaria exilis HOM05M002609 ORTHO05M003967 3.0e-173 611.7 706 52.4
TraesCS5A03G0411800 Triticum aestivum HOM05M002609 ORTHO05M003967 5.1e-173 610.9 1116 39.0
TRITD5Av1G112920 Triticum turgidum HOM05M002609 ORTHO05M003967 5.1e-173 610.9 1116 39.0
MisinT114200 Miscanthus sinensis HOM05M002609 ORTHO05M003967 9.6e-172 606.7 1103 38.8
PH02Gene46831 Phyllostachys edulis HOM05M002609 ORTHO05M003967 2.1e-171 605.5 1119 38.6
Sobic.005G008800 Sorghum bicolor HOM05M002609 ORTHO05M003967 8.1e-171 603.6 1103 38.7
PH02Gene38264 Phyllostachys edulis HOM05M002609 ORTHO05M003967 1.1e-170 603.2 1119 38.7
Misin14G015300 Miscanthus sinensis HOM05M002609 ORTHO05M003967 5.8e-169 597.4 1111 38.1
Zm00001eb404940 Zea mays B73 HOM05M002609 ORTHO05M003967 7.6e-169 597.0 1110 38.5
Sobic.008G009700 Sorghum bicolor HOM05M002609 ORTHO05M003967 9.9e-169 596.7 1110 38.1
Zm00007a00012626 Zea mays B104 HOM05M002609 ORTHO05M003967 5.1e-165 584.3 1141 37.4
Seita.7G328200 Setaria italica HOM05M002609 ORTHO05M003967 1.5e-161 572.8 1074 38.4
Zjn_sc00028.1.g04190.1.am.mkhc Zoysia japonica ssp. nagirizaki HOM05M002609 ORTHO05M004797 2.6e-161 572.0 488 65.8
GWHGAORA064510 Cenchrus purpureus HOM05M002609 ORTHO05M003967 5.8e-161 570.9 1079 38.7
Zm00001eb093980 Zea mays B73 HOM05M002609 ORTHO05M003967 2.5e-159 565.5 1105 37.4
Sspon.07G0016860-2B Saccharum spontaneum HOM05M002609 ORTHO05M003967 3.2e-159 565.1 1080 37.7
Os11g0109933 Oryza sativa ssp. japonica HOM05M002609 ORTHO05M003967 2.8e-155 552.0 1079 37.2
Ma10_g03450 Musa acuminata HOM05M002609 ORTHO05M003967 2.2e-152 542.3 1124 35.1
Ma05_g14300 Musa acuminata HOM05M002609 ORTHO05M003967 2.9e-152 542.0 1124 35.1
Sspon.07G0016860-1A Saccharum spontaneum HOM05M002609 ORTHO05M003967 6.5e-152 540.8 1082 37.0
DDU743G0246 Dioscorea dumetorum HOM05M002609 ORTHO05M003967 1.0e-149 533.5 1121 34.8
GWHGAORA005692 Cenchrus purpureus HOM05M002609 ORTHO05M003967 3.9e-149 531.6 1069 37.8
GWHGAZTO062370 Oryza alta HOM05M002609 ORTHO05M003967 8.8e-149 530.4 1063 36.9
Dexi8B01G0000570 Digitaria exilis HOM05M002609 ORTHO05M003967 1.1e-148 530.0 1059 36.4
Aco007098 Ananas comosus HOM05M002609 ORTHO05M003967 1.5e-148 529.6 1157 34.4
MBI15_g10510_MAGBIO Magnolia biondii HOM05M002609 ORTHO05M003967 9.7e-148 526.9 1124 35.0
evm.TU.AsparagusV1_08.3377.V1.1 Asparagus officinalis HOM05M002609 ORTHO05M003967 4.8e-147 524.6 1003 37.2
Glyma.09G278500 Glycine max HOM05M002609 ORTHO05M003967 1.5e-145 519.6 1110 33.9
Zm00007a00016398 Zea mays B104 HOM05M002609 ORTHO05M003967 2.0e-145 519.2 1076 36.2
CALSI_Maker00034398 Calamus simplicifolius HOM05M002609 ORTHO05M003967 6.5e-144 514.2 1159 34.3
Glyma.18G210300 Glycine max HOM05M002609 ORTHO05M003967 8.5e-144 513.8 1111 33.7
Potri.006G106600 Populus trichocarpa HOM05M002609 ORTHO05M003967 1.4e-143 513.1 1118 33.7
ATR0681G310 Amborella trichopoda HOM05M002609 ORTHO05M003967 7.2e-143 510.8 1127 33.5
Dexi3A01G0000540 Digitaria exilis HOM05M002609 ORTHO05M003967 1.6e-142 509.6 1001 38.0
p5.00_sc00015_p0016 Elaeis guineensis HOM05M002609 ORTHO05M003967 1.6e-142 509.6 1079 34.7
Solyc09g014780.3 Solanum lycopersicum HOM05M002609 ORTHO05M003967 2.1e-142 509.2 1117 32.9
DDU324G0026 Dioscorea dumetorum HOM05M002609 ORTHO05M003967 6.1e-142 507.7 1141 33.8
evm.TU.AsparagusV1_02.299.V1.1 Asparagus officinalis HOM05M002609 ORTHO05M003967 3.0e-141 505.4 1006 36.4
Spipo3G0000500 Spirodela polyrhiza HOM05M002609 ORTHO05M003967 2.6e-140 502.3 1118 33.8
p5.00_sc00003_p0275 Elaeis guineensis HOM05M002609 ORTHO05M003967 5.7e-140 501.1 1133 33.9
Potri.016G132000 Populus trichocarpa HOM05M002609 ORTHO05M003967 1.3e-139 500.0 1123 33.5
Asa3G01396 Allium sativum HOM05M002609 ORTHO05M003967 8.2e-139 497.3 1121 33.1
AT3G08850 Arabidopsis thaliana HOM05M002609 ORTHO05M003967 8.2e-139 497.3 1102 32.9
HPP92_015583 Vanilla planifolia HOM05M002609 ORTHO05M003967 1.8e-138 496.1 1124 33.5
Dexi8A01G0000610 Digitaria exilis HOM05M002609 ORTHO05M003967 4.8e-131 471.5 917 38.1
Zosma01g19160 Zostera marina HOM05M002609 ORTHO05M003967 1.3e-128 463.4 1110 31.7
CDE12G0125 Ceratophyllum demersum HOM05M002609 ORTHO05M003967 3.2e-127 458.8 1121 31.8
CDE04G1751 Ceratophyllum demersum HOM05M002609 ORTHO05M003967 8.0e-126 454.1 1121 31.2
AT5G01770 Arabidopsis thaliana HOM05M002609 ORTHO05M003967 5.2e-125 451.4 1101 31.5
Dexi3B01G0000590 Digitaria exilis HOM05M002609 ORTHO05M003967 2.9e-120 435.6 509 52.1
Dexi3B01G0000620 Digitaria exilis HOM05M002609 ORTHO05M003967 2.9e-120 435.6 509 52.1
Solyc10g076260.2 Solanum lycopersicum HOM05M002609 ORTHO05M003967 2.9e-104 382.5 404 50.5
Pp3c9_4770 Physcomitrium patens HOM05M002609 ORTHO05M003967 6.6e-104 381.3 406 51.2
Pp3c25_7220 Physcomitrium patens HOM05M002609 ORTHO05M003967 7.3e-103 377.9 402 51.5
Pp3c15_3360 Physcomitrium patens HOM05M002609 ORTHO05M003967 1.2e-102 377.1 406 51.0
Mapoly0002s0262 Marchantia polymorpha HOM05M002609 ORTHO05M003967 1.6e-102 376.7 407 50.9
AagrBONN_evm.TU.Sc2ySwM_228.3097 Anthoceros agrestis HOM05M002609 ORTHO05M003967 2.3e-101 372.9 410 50.7
Pp3c17_3950 Physcomitrium patens HOM05M002609 ORTHO05M003967 3.1e-101 372.5 402 51.0
SMO116G0458 Selaginella moellendorffii HOM05M002609 ORTHO05M003967 9.8e-100 367.5 403 50.4
OsR498G1119304200.01 Oryza sativa ssp. indica HOM05M002609 ORTHO05M003967 4.6e-97 358.6 963 31.9
MCO07G246 Micromonas commoda HOM05M002609 ORTHO05M003967 4.3e-95 352.1 408 47.5
SMO334G0080 Selaginella moellendorffii HOM05M002609 ORTHO05M003967 6.2e-94 348.2 397 48.1
Cre08.g371957 Chlamydomonas reinhardtii HOM05M002609 ORTHO05M003967 2.0e-92 343.2 408 46.1
EJB05_30002 Eragrostis curvula HOM05M002609 ORTHO05M003967 5.6e-87 325.1 721 35.5
EJB05_29996 Eragrostis curvula HOM05M002609 ORTHO05M003967 1.4e-85 320.5 725 35.2
PRCOL_00002325 Prasinoderma coloniale HOM05M002609 ORTHO05M003967 1.5e-84 317.0 443 42.2
Zm00001eb195140 Zea mays B73 HOM05M002609 ORTHO05M003967 3.6e-78 295.8 803 31.9
Zm00007a00041541 Zea mays B104 HOM05M002609 ORTHO05M003967 2.0e-76 290.0 824 31.1
SEGI_27011 Sequoiadendron giganteum HOM05M002609 ORTHO05M003967 1.7e-75 287.0 194 72.7
GWHGAZTO065342 Oryza alta HOM05M002609 ORTHO05M003967 1.5e-55 220.7 716 29.3
GWHGAORA010855 Cenchrus purpureus HOM05M002609 ORTHO05M003967 1.3e-48 197.6 299 45.2
Dexi3A01G0026730 Digitaria exilis HOM05M002609 ORTHO05M003967 6.7e-48 195.3 282 42.6
Dexi3B01G0000610 Digitaria exilis HOM05M002609 ORTHO05M003967 1.1e-47 194.5 278 43.2
MisinT040500 Miscanthus sinensis HOM05M002609 ORTHO05M003967 6.2e-46 188.7 137 71.5
CBR_g54868 Chara braunii HOM05M000008 ORTHO05M000015 1.3e-43 181.0 116 65.5
GWHGAZTO065343 Oryza alta HOM05M002609 ORTHO05M012823 3.8e-43 179.5 91 91.2
GWHGAORA010856 Cenchrus purpureus HOM05M002609 ORTHO05M003967 1.4e-42 177.6 106 81.1
EJB05_29987 Eragrostis curvula HOM05M002609 ORTHO05M016648 6.7e-40 168.7 110 78.2
Zjn_sc03999.1.g00010.1.sm.mk Zoysia japonica ssp. nagirizaki HOM05M002609 ORTHO05M008699 9.7e-39 164.9 87 97.7
OsKitaake05g108200 Oryza sativa Kitaake HOM05M000634 ORTHO05M004797 2.1e-33 147.1 76 90.8
Os05g0307400 Oryza sativa ssp. japonica HOM05M000634 ORTHO05M004797 2.1e-33 147.1 76 90.8
CBR_g54867 Chara braunii HOM05M002609 ORTHO05M003967 1.6e-25 120.9 110 59.1
MBI03_g24838_MAGBIO Magnolia biondii HOM05M003330 ORTHO05M008699 7.9e-25 118.6 88 73.9
DexiUA01G0015560 Digitaria exilis HOM05M002609 ORTHO05M018963 3.8e-19 99.8 63 79.4
CBR_g54859 Chara braunii HOM05M000008 ORTHO05M000001 5.5e-18 95.9 108 41.7
Zm00007a00041542 Zea mays B104 HOM05M002609 ORTHO05M012823 2.6e-15 87.0 47 87.2
GWHGAZTO065341 Oryza alta HOM05M002609 ORTHO05M018963 5.7e-15 85.9 58 74.1
MBI18_g48147_MAGBIO Magnolia biondii HOM05M002609 ORTHO05M008699 2.0e-12 77.4 152 40.1
evm.TU.AsparagusV1_07.1072.V1.1 Asparagus officinalis HOM05M002609 ORTHO05M073522 1.7e-11 74.3 59 59.3
Glyma.10G121548 Glycine max HOM05M002609 ORTHO05M012823 2.5e-10 70.5 37 86.5
OsR498G0510420000.01 Oryza sativa ssp. indica HOM05M000634 ORTHO05M004797 3.6e-09 66.6 33 90.9
PH02Gene33580 Phyllostachys edulis HOM05M000894 ORTHO05M012823 3.6e-09 66.6 45 66.7
MBI12_g13710_MAGBIO Magnolia biondii HOM05M002609 ORTHO05M008699 6.1e-09 65.9 144 38.2
MBI17_g18133_MAGBIO Magnolia biondii HOM05M002609 ORTHO05M008699 1.0e-08 65.1 60 61.7
Solyc10g076270.3 Solanum lycopersicum HOM05M002609 ORTHO05M003967 2.8e-06 57.0 70 51.4


User provided reference genes

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