Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zjn_sc00054.1.g00920.1.am.mkhc Zoysia japonica ssp. nagirizaki HOM05M005962 ORTHO05M007703 5.7e-164 580.1 298 100.0
EJB05_27906 Eragrostis curvula HOM05M005962 ORTHO05M007703 2.8e-102 375.2 319 61.8
Pahal.8G172400 Panicum hallii HOM05M005962 ORTHO05M007703 4.6e-97 357.8 321 58.9
Misin09G123000 Miscanthus sinensis HOM05M005962 ORTHO05M007703 1.8e-96 355.9 321 59.5
Seita.8G122100 Setaria italica HOM05M005962 ORTHO05M007703 1.1e-95 353.2 325 58.5
Sevir.8G128700 Setaria viridis HOM05M005962 ORTHO05M007703 1.1e-95 353.2 325 58.5
GWHGAORA026431 Cenchrus purpureus HOM05M005962 ORTHO05M007703 1.5e-95 352.8 326 58.6
PH02Gene31209 Phyllostachys edulis HOM05M005962 ORTHO05M007703 1.5e-95 352.8 323 57.9
Misin10G091700 Miscanthus sinensis HOM05M005962 ORTHO05M007703 7.4e-95 350.5 321 58.6
Sobic.005G116200 Sorghum bicolor HOM05M005962 ORTHO05M007703 1.3e-94 349.7 321 58.6
Zm00001eb169540 Zea mays B73 HOM05M005962 ORTHO05M007703 9.0e-93 343.6 325 57.5
Sspon.06G0014200-1A Saccharum spontaneum HOM05M005962 ORTHO05M007703 8.5e-91 337.0 357 52.9
GWHGAZTO064051 Oryza alta HOM05M005962 ORTHO05M007703 6.1e-89 330.9 322 56.8
Bradi4g39090 Brachypodium distachyon HOM05M005962 ORTHO05M007703 6.7e-88 327.4 324 56.5
GWHGAZTO012005 Oryza alta HOM05M005962 ORTHO05M007703 1.1e-87 326.6 323 56.0
V3.Lp_chr3_0G3524 Lolium perenne HOM05M005962 ORTHO05M007703 1.3e-86 323.2 321 56.4
GWHGASIY028611 Secale cereale HOM05M005962 ORTHO05M007703 1.4e-85 319.7 321 55.8
OsR498G1120155000.01 Oryza sativa ssp. indica HOM05M005962 ORTHO05M007703 9.1e-85 317.0 328 55.5
TraesCS3A03G0056500 Triticum aestivum HOM05M005962 ORTHO05M007703 1.2e-84 316.6 326 54.3
TRITD3Av1G007460 Triticum turgidum HOM05M005962 ORTHO05M007703 1.2e-84 316.6 326 54.3
TRIDC3AG000190 Triticum dicoccoides HOM05M005962 ORTHO05M007703 7.7e-84 313.9 317 54.9
TraesCS3D03G0031600 Triticum aestivum HOM05M005962 ORTHO05M007703 1.7e-83 312.8 331 54.4
Horvu_MOREX_3H01G038000 Hordeum vulgare HOM05M005962 ORTHO05M007703 5.0e-83 311.2 329 53.8
TRITD3Bv1G004590 Triticum turgidum HOM05M005962 ORTHO05M007703 8.5e-83 310.5 325 54.8
OB11G20900 Oryza brachyantha HOM05M005962 ORTHO05M007703 1.9e-82 309.3 323 53.6
TraesCS3B03G0038000 Triticum aestivum HOM05M005962 ORTHO05M007703 3.2e-82 308.5 326 54.9
TRIDC3BG003030 Triticum dicoccoides HOM05M005962 ORTHO05M007703 4.2e-82 308.1 325 54.2
GWHGASIY012683 Secale cereale HOM05M005962 ORTHO05M007703 6.7e-80 300.8 321 53.6
OsKitaake11g136600 Oryza sativa Kitaake HOM05M005962 ORTHO05M007703 2.0e-79 299.3 328 52.7
GWHGASIY012675 Secale cereale HOM05M005962 ORTHO05M007703 5.7e-79 297.7 321 53.3
Aco016068 Ananas comosus HOM05M005962 ORTHO05M007703 2.8e-78 295.4 329 50.8
Os11g0488500 Oryza sativa ssp. japonica HOM05M005962 ORTHO05M007703 3.7e-78 295.0 324 52.8
Aco028307 Ananas comosus HOM05M005962 ORTHO05M007703 4.1e-77 291.6 326 50.3
p5.00_sc00229_p0008 Elaeis guineensis HOM05M005962 ORTHO05M007703 2.0e-76 289.3 323 50.2
evm.TU.AsparagusV1_09.1347.V1.1 Asparagus officinalis HOM05M005962 ORTHO05M007703 5.9e-76 287.7 325 49.8
Ma06_g22170 Musa acuminata HOM05M005962 ORTHO05M007703 3.0e-72 275.4 322 47.5
MBI11_g05329_MAGBIO Magnolia biondii HOM05M005962 ORTHO05M007703 1.4e-69 266.5 324 46.6
Spipo13G0026000 Spirodela polyrhiza HOM05M005962 ORTHO05M007703 9.1e-69 263.8 312 49.0
Zosma05g09980 Zostera marina HOM05M005962 ORTHO05M007703 1.0e-67 260.4 311 46.9
DDU537G0007 Dioscorea dumetorum HOM05M005962 ORTHO05M007703 2.2e-67 259.2 329 45.6
DDU738G0034 Dioscorea dumetorum HOM05M005962 ORTHO05M007703 5.0e-67 258.1 329 45.6
Sspon.06G0014200-3C Saccharum spontaneum HOM05M005962 ORTHO05M007703 2.1e-65 252.7 268 53.0
CDE05G3615 Ceratophyllum demersum HOM05M005962 ORTHO05M007703 2.0e-63 246.1 315 45.4
Asa8G03804 Allium sativum HOM05M005962 ORTHO05M007703 9.8e-63 243.8 143 76.2
Glyma.18G006200 Glycine max HOM05M005962 ORTHO05M007703 3.7e-62 241.9 320 44.1
Glyma.11G250800 Glycine max HOM05M005962 ORTHO05M007703 1.4e-61 240.0 323 43.3
Potri.003G171900 Populus trichocarpa HOM05M005962 ORTHO05M007703 2.4e-61 239.2 325 43.7
AT1G11780 Arabidopsis thaliana HOM05M005962 ORTHO05M007703 2.0e-60 236.1 311 44.7
Solyc04g045590.3 Solanum lycopersicum HOM05M005962 ORTHO05M007703 3.8e-59 231.9 323 41.5
SEGI_28427 Sequoiadendron giganteum HOM05M005962 ORTHO05M007703 5.2e-56 221.5 301 44.2
ATR0561G191 Amborella trichopoda HOM05M005962 ORTHO05M007703 2.8e-54 215.7 139 71.2
SMO196G0120 Selaginella moellendorffii HOM05M005962 ORTHO05M007703 5.4e-53 211.5 289 42.9
Mapoly0036s0054 Marchantia polymorpha HOM05M005962 ORTHO05M007703 2.7e-52 209.1 148 64.2
AagrBONN_evm.TU.Sc2ySwM_228.5822 Anthoceros agrestis HOM05M005962 ORTHO05M007703 3.5e-52 208.8 306 40.5
Pp3c15_20640 Physcomitrium patens HOM05M005962 ORTHO05M007703 5.6e-50 201.4 139 67.6
AET3Gv20038200 Aegilops tauschii HOM05M005962 ORTHO05M007703 5.2e-48 194.9 232 48.7
Zm00007a00041829 Zea mays B104 HOM05M005962 ORTHO05M007703 7.8e-44 181.0 92 90.2
CALSI_Maker00038605 Calamus simplicifolius HOM05M005962 ORTHO05M007703 8.6e-43 177.6 241 45.6
CBR_g32330 Chara braunii HOM05M005962 ORTHO05M007703 2.1e-41 172.9 147 53.7
CALSI_Maker00014886 Calamus simplicifolius HOM05M005962 ORTHO05M007703 1.0e-35 154.1 93 77.4
Cre06.g278198 Chlamydomonas reinhardtii HOM05M005962 ORTHO05M007703 2.8e-33 146.0 210 36.2
Dexi8A01G0010120 Digitaria exilis HOM05M005962 ORTHO05M007703 1.9e-29 133.3 92 73.9
Zm00007a00051534 Zea mays B104 HOM05M005962 ORTHO05M007703 7.1e-29 131.3 92 67.4
Sspon.06G0014200-2B Saccharum spontaneum HOM05M005962 ORTHO05M007703 1.2e-28 130.6 91 69.2
Sspon.06G0014200-4D Saccharum spontaneum HOM05M005962 ORTHO05M007703 1.2e-28 130.6 91 69.2
Dexi8B01G0009060 Digitaria exilis HOM05M005962 ORTHO05M007703 1.0e-27 127.5 91 71.4
p5.00_sc00152_p0004 Elaeis guineensis HOM05M005962 ORTHO05M007703 1.7e-27 126.7 87 66.7
PRCOL_00005324 Prasinoderma coloniale HOM05M005962 ORTHO05M007703 8.1e-25 117.9 146 43.2
MCO14G547 Micromonas commoda HOM05M005962 ORTHO05M007703 2.2e-22 109.8 77 57.1
Asa8G00459 Allium sativum HOM05M005962 ORTHO05M007703 6.4e-22 108.2 66 74.2
Zjn_sc00145.1.g00110.1.sm.mk Zoysia japonica ssp. nagirizaki HOM05M005962 ORTHO05M000543 4.0e-16 89.0 83 55.4
Asa6G01596 Allium sativum HOM05M005962 ORTHO05M007703 2.0e-15 86.7 64 59.4
Asa0G02622 Allium sativum HOM05M005962 ORTHO05M007703 1.1e-13 80.9 62 58.1
AET5Gv21090100 Aegilops tauschii HOM05M001987 ORTHO05M002131 3.4e-07 59.3 91 36.3
TRIDC5AG067190 Triticum dicoccoides HOM05M001987 ORTHO05M002131 5.8e-07 58.5 92 37.0
Asa6G03381 Allium sativum HOM05M001987 ORTHO05M002131 9.9e-07 57.8 109 29.4
MBI15_g40704_MAGBIO Magnolia biondii HOM05M001987 ORTHO05M002131 1.7e-06 57.0 106 34.0
ATR0681G237 Amborella trichopoda HOM05M001987 ORTHO05M002131 2.2e-06 56.6 84 36.9
Asa0G04428 Allium sativum HOM05M001987 ORTHO05M002131 3.8e-06 55.8 137 26.3
EJB05_03880 Eragrostis curvula HOM05M001987 ORTHO05M002131 4.9e-06 55.5 109 30.3
Asa8G03517 Allium sativum HOM05M001987 ORTHO05M002131 6.4e-06 55.1 137 27.7


User provided reference genes

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