Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zjn_sc00031.1.g01910.1.am.mkhc Zoysia japonica ssp. nagirizaki HOM05M000971 ORTHO05M288642 1.4e-165 585.9 390 100.0
EJB05_29260 Eragrostis curvula HOM05M000971 ORTHO05M000931 4.1e-37 159.1 161 93.2
Misin10G037400 Miscanthus sinensis HOM05M000971 ORTHO05M000931 1.7e-30 137.1 164 86.6
Misin09G029200 Miscanthus sinensis HOM05M000971 ORTHO05M000931 2.9e-30 136.3 171 83.0
Horvu_MOREX_4H01G133400 Hordeum vulgare HOM05M000971 ORTHO05M000931 1.2e-28 131.0 165 63.6
GWHGASIY018971 Secale cereale HOM05M000971 ORTHO05M000931 1.0e-27 127.9 159 64.8
Zm00007a00007477 Zea mays B104 HOM05M000971 ORTHO05M000931 1.3e-27 127.5 223 65.9
Sobic.005G050600 Sorghum bicolor HOM05M000971 ORTHO05M000931 1.7e-27 127.1 164 82.9
GWHGASIY019198 Secale cereale HOM05M000971 ORTHO05M000931 2.3e-27 126.7 159 69.8
Sspon.05G0029720-2D Saccharum spontaneum HOM05M000971 ORTHO05M000931 3.3e-26 122.9 164 87.2
AET4Gv20235400 Aegilops tauschii HOM05M000971 ORTHO05M000931 6.2e-25 118.6 165 78.8
TraesCS4D03G0217300 Triticum aestivum HOM05M000971 ORTHO05M000931 6.2e-25 118.6 165 78.8
V3.Lp_chr4_0G12080 Lolium perenne HOM05M000971 ORTHO05M000931 8.1e-25 118.2 159 70.4
Seita.8G046100 Setaria italica HOM05M000971 ORTHO05M000931 6.8e-24 115.2 159 82.4
Sevir.8G045900 Setaria viridis HOM05M000971 ORTHO05M000931 6.8e-24 115.2 159 82.4
TraesCS4B03G0254100 Triticum aestivum HOM05M000971 ORTHO05M000931 8.9e-24 114.8 160 66.9
TRIDC4BG017280 Triticum dicoccoides HOM05M000971 ORTHO05M000931 8.9e-24 114.8 160 66.9
TRITD4Bv1G043620 Triticum turgidum HOM05M000971 ORTHO05M000931 8.9e-24 114.8 160 66.9
GWHGAORA011378 Cenchrus purpureus HOM05M000971 ORTHO05M000931 1.2e-23 114.4 164 72.0
Sspon.05G0029720-1B Saccharum spontaneum HOM05M000971 ORTHO05M000931 2.6e-23 113.2 163 80.4
PH02Gene46631 Phyllostachys edulis HOM05M000971 ORTHO05M000931 1.7e-22 110.5 163 61.3
Zm00001eb170810 Zea mays B73 HOM05M000971 ORTHO05M000931 3.8e-22 109.4 53 94.3
Zm00007a00025109 Zea mays B104 HOM05M000971 ORTHO05M000931 3.8e-22 109.4 53 94.3
Zm00001eb091850 Zea mays B73 HOM05M000971 ORTHO05M000931 6.4e-22 108.6 53 94.3
Pahal.8G041600 Panicum hallii HOM05M000971 ORTHO05M000931 8.4e-22 108.2 53 94.3
Dexi8B01G0003630 Digitaria exilis HOM05M000971 ORTHO05M000931 2.4e-21 106.7 53 92.5
GWHGAORA042789 Cenchrus purpureus HOM05M002159 ORTHO05M003005 3.5e-20 102.8 163 69.3
PH02Gene17722 Phyllostachys edulis HOM05M000971 ORTHO05M000931 2.3e-19 100.1 163 60.1
TraesCS4A03G0553800 Triticum aestivum HOM05M000971 ORTHO05M000931 1.1e-18 97.8 53 83.0
TRIDC4AG033080 Triticum dicoccoides HOM05M000971 ORTHO05M000931 1.1e-18 97.8 53 83.0
TRITD4Av1G160620 Triticum turgidum HOM05M000971 ORTHO05M000931 1.1e-18 97.8 53 83.0
Dexi8A01G0004260 Digitaria exilis HOM05M000971 ORTHO05M000931 2.5e-18 96.7 158 77.8
GWHGAZTO062793 Oryza alta HOM05M000971 ORTHO05M000931 1.3e-17 94.4 197 54.8
OsKitaake11g045600 Oryza sativa Kitaake HOM05M000971 ORTHO05M000931 8.1e-17 91.7 161 66.5
Os11g0168300 Oryza sativa ssp. japonica HOM05M000971 ORTHO05M000931 8.1e-17 91.7 161 66.5
OB11G13530 Oryza brachyantha HOM05M000971 ORTHO05M000931 3.4e-15 86.3 161 68.9
Bradi4g24600 Brachypodium distachyon HOM05M000971 ORTHO05M000931 4.4e-15 85.9 146 49.3
p5.00_sc00120_p0009 Elaeis guineensis HOM05M000971 ORTHO05M000931 1.4e-13 80.9 53 75.5
PH02Gene14553 Phyllostachys edulis HOM05M000971 ORTHO05M000931 4.2e-13 79.3 52 73.1
GWHGAZTO029603 Oryza alta HOM05M000971 ORTHO05M000931 1.2e-12 77.8 51 74.5
GWHGAZTO079275 Oryza alta HOM05M000971 ORTHO05M000931 1.2e-12 77.8 51 74.5
OB04G19900 Oryza brachyantha HOM05M000971 ORTHO05M000931 1.2e-12 77.8 51 74.5
OB09G24700 Oryza brachyantha HOM05M000971 ORTHO05M001259 1.2e-12 77.8 51 72.5
OsKitaake04g130500 Oryza sativa Kitaake HOM05M000971 ORTHO05M000931 1.2e-12 77.8 51 74.5
OsR498G0408582600.01 Oryza sativa ssp. indica HOM05M000971 ORTHO05M000931 1.2e-12 77.8 51 74.5
Os04g0428950 Oryza sativa ssp. japonica HOM05M000971 ORTHO05M000931 1.2e-12 77.8 51 74.5
EJB05_43737 Eragrostis curvula HOM05M000971 ORTHO05M000931 2.1e-12 77.0 47 78.7
PH02Gene40953 Phyllostachys edulis HOM05M000971 ORTHO05M000931 2.1e-12 77.0 51 70.6
Aco007865 Ananas comosus HOM05M000971 ORTHO05M000931 2.7e-12 76.6 55 67.3
Dexi9B01G0046620 Digitaria exilis HOM05M000971 ORTHO05M000931 2.7e-12 76.6 52 71.2
p5.00_sc00043_p0061 Elaeis guineensis HOM05M000971 ORTHO05M000931 3.5e-12 76.3 52 73.1
Horvu_MOREX_5H01G499000 Hordeum vulgare HOM05M000971 ORTHO05M000931 3.5e-12 76.3 55 70.9
GWHGAZTO098930 Oryza alta HOM05M000971 ORTHO05M000931 3.5e-12 76.3 51 70.6
GWHGAORA007379 Cenchrus purpureus HOM05M000971 ORTHO05M000931 4.6e-12 75.9 47 76.6
GWHGAORA048428 Cenchrus purpureus HOM05M000971 ORTHO05M000931 4.6e-12 75.9 47 76.6
Ot_Chr2_gn32111 Oropetium thomaeum HOM05M000971 ORTHO05M000931 4.6e-12 75.9 47 76.6
Seita.2G292300 Setaria italica HOM05M000971 ORTHO05M000931 4.6e-12 75.9 47 76.6
Sevir.2G303500 Setaria viridis HOM05M000971 ORTHO05M000931 4.6e-12 75.9 47 76.6
Misin04G264400 Miscanthus sinensis HOM05M000971 ORTHO05M000931 6.0e-12 75.5 47 76.6
Sobic.002G281600 Sorghum bicolor HOM05M000971 ORTHO05M000931 6.0e-12 75.5 47 76.6
GWHGAORA023018 Cenchrus purpureus HOM05M000971 ORTHO05M000931 7.9e-12 75.1 52 71.2
Glyma.04G217100 Glycine max HOM05M000971 ORTHO05M000931 7.9e-12 75.1 46 76.1
Ma01_g02740 Musa acuminata HOM05M000971 ORTHO05M000931 7.9e-12 75.1 54 66.7
V3.Lp_chr5_0G17778 Lolium perenne HOM05M000971 ORTHO05M000931 1.0e-11 74.7 55 69.1
Pahal.2G350300 Panicum hallii HOM05M000971 ORTHO05M000931 1.0e-11 74.7 47 74.5
Sobic.006G080000 Sorghum bicolor HOM05M000971 ORTHO05M000931 1.0e-11 74.7 52 69.2
TraesCS5D03G0763500 Triticum aestivum HOM05M000971 ORTHO05M000931 1.0e-11 74.7 55 69.1
TRIDC5AG049290 Triticum dicoccoides HOM05M000971 ORTHO05M000931 1.0e-11 74.7 55 69.1
TRITD5Av1G186980 Triticum turgidum HOM05M000971 ORTHO05M000931 1.0e-11 74.7 55 69.1
TRITD5Bv1G176580 Triticum turgidum HOM05M000971 ORTHO05M000931 1.0e-11 74.7 55 69.1
Bradi5g10100 Brachypodium distachyon HOM05M000971 ORTHO05M000931 1.3e-11 74.3 52 71.2
DDU002G0434 Dioscorea dumetorum HOM05M000971 ORTHO05M000931 1.3e-11 74.3 53 69.8
Misin03G231900 Miscanthus sinensis HOM05M000971 ORTHO05M000931 1.3e-11 74.3 53 71.7
Misin11G077600 Miscanthus sinensis HOM05M000971 ORTHO05M000931 1.3e-11 74.3 52 69.2
Sspon.05G0011470-1A Saccharum spontaneum HOM05M000971 ORTHO05M000931 1.3e-11 74.3 52 69.2
Sspon.05G0011470-3D Saccharum spontaneum HOM05M000971 ORTHO05M000931 1.3e-11 74.3 52 69.2
TraesCS5B03G0838200 Triticum aestivum HOM05M000971 ORTHO05M000931 1.3e-11 74.3 55 67.3
Zm00001eb015640 Zea mays B73 HOM05M000971 ORTHO05M000931 1.3e-11 74.3 55 69.1
Zjn_sc00122.1.g00090.1.am.mkhc Zoysia japonica ssp. nagirizaki HOM05M000971 ORTHO05M000931 1.3e-11 74.3 47 76.6
CALSI_Maker00021731 Calamus simplicifolius HOM05M000971 ORTHO05M000931 1.7e-11 73.9 46 78.3
Ma08_g34380 Musa acuminata HOM05M000971 ORTHO05M000931 1.7e-11 73.9 52 65.4
PH02Gene05085 Phyllostachys edulis HOM05M000971 ORTHO05M000931 1.7e-11 73.9 55 67.3
Potri.005G194600 Populus trichocarpa HOM05M000971 ORTHO05M000931 1.7e-11 73.9 46 76.1
Zm00001eb082970 Zea mays B73 HOM05M000971 ORTHO05M000931 1.7e-11 73.9 51 70.6
AET5Gv20769000 Aegilops tauschii HOM05M000971 ORTHO05M000931 2.3e-11 73.6 47 74.5
Glyma.14G221700 Glycine max HOM05M000971 ORTHO05M000931 2.3e-11 73.6 44 79.5
MBI08_g30369_MAGBIO Magnolia biondii HOM05M000971 ORTHO05M000931 2.3e-11 73.6 55 70.9
Ma10_g08470 Musa acuminata HOM05M000971 ORTHO05M000931 2.3e-11 73.6 53 62.3
OsKitaake09g182700 Oryza sativa Kitaake HOM05M000971 ORTHO05M000931 2.3e-11 73.6 47 74.5
OsR498G0917887200.01 Oryza sativa ssp. indica HOM05M000971 ORTHO05M000931 2.3e-11 73.6 47 74.5
Os09g0542000 Oryza sativa ssp. japonica HOM05M000971 ORTHO05M000931 2.3e-11 73.6 47 74.5
Pahal.9G606500 Panicum hallii HOM05M000971 ORTHO05M000931 2.3e-11 73.6 52 69.2
Potri.002G066100 Populus trichocarpa HOM05M000971 ORTHO05M000931 2.3e-11 73.6 46 73.9
Seita.7G098000 Setaria italica HOM05M000971 ORTHO05M000931 2.3e-11 73.6 52 69.2
Sevir.7G105900 Setaria viridis HOM05M000971 ORTHO05M000931 2.3e-11 73.6 52 69.2
TraesCS5A03G0807900 Triticum aestivum HOM05M000971 ORTHO05M000931 2.3e-11 73.6 47 74.5
TRIDC5BG053120 Triticum dicoccoides HOM05M000971 ORTHO05M000931 2.3e-11 73.6 47 74.5
Zm00001eb103890 Zea mays B73 HOM05M000971 ORTHO05M000931 2.3e-11 73.6 55 69.1
AET2Gv20684100 Aegilops tauschii HOM05M000971 ORTHO05M000931 3.9e-11 72.8 52 69.2
CALSI_Maker00016158 Calamus simplicifolius HOM05M000971 ORTHO05M000931 3.9e-11 72.8 47 76.6
Horvu_MOREX_2H01G448700 Hordeum vulgare HOM05M000971 ORTHO05M000931 3.9e-11 72.8 52 69.2
SEGI_05776 Sequoiadendron giganteum HOM05M000971 ORTHO05M000931 3.9e-11 72.8 46 71.7
TraesCS2B03G0828300 Triticum aestivum HOM05M000971 ORTHO05M000931 3.9e-11 72.8 52 69.2
TraesCS2D03G0694400 Triticum aestivum HOM05M000971 ORTHO05M000931 3.9e-11 72.8 52 69.2
TRIDC2AG043800 Triticum dicoccoides HOM05M000971 ORTHO05M000931 3.9e-11 72.8 52 69.2
TRIDC2BG046460 Triticum dicoccoides HOM05M000971 ORTHO05M000931 3.9e-11 72.8 52 69.2
TRITD2Bv1G150730 Triticum turgidum HOM05M000971 ORTHO05M000931 3.9e-11 72.8 52 69.2
CDE02G0977 Ceratophyllum demersum HOM05M000971 ORTHO05M000931 5.1e-11 72.4 53 64.2
DDU739G0046 Dioscorea dumetorum HOM05M000971 ORTHO05M000931 5.1e-11 72.4 52 65.4
ATR0584G126 Amborella trichopoda HOM05M000971 ORTHO05M000931 6.6e-11 72.0 46 73.9
Bradi4g36710 Brachypodium distachyon HOM05M000971 ORTHO05M000931 6.6e-11 72.0 53 69.8
Misin12G076500 Miscanthus sinensis HOM05M000971 ORTHO05M000931 6.6e-11 72.0 52 67.3
Glyma.06G148800 Glycine max HOM05M000971 ORTHO05M000931 8.7e-11 71.6 53 66.0
Solyc04g071690.4 Solanum lycopersicum HOM05M000971 ORTHO05M000931 1.1e-10 71.2 45 73.3
TraesCS2A03G0751200 Triticum aestivum HOM05M000971 ORTHO05M000931 1.1e-10 71.2 52 67.3
TRITD2Av1G183580 Triticum turgidum HOM05M000971 ORTHO05M000931 1.1e-10 71.2 52 67.3
GWHGAZTO052523 Oryza alta HOM05M000971 ORTHO05M000931 1.5e-10 70.9 47 72.3
GWHGASIY008899 Secale cereale HOM05M000971 ORTHO05M000931 1.5e-10 70.9 52 67.3
CDE04G2416 Ceratophyllum demersum HOM05M000971 ORTHO05M000931 1.9e-10 70.5 55 65.5
Pp3c20_14330 Physcomitrium patens HOM05M000971 ORTHO05M000931 1.9e-10 70.5 50 64.0
Aco013088 Ananas comosus HOM05M000971 ORTHO05M000931 2.5e-10 70.1 46 71.7
Mapoly0007s0249 Marchantia polymorpha HOM05M000971 ORTHO05M000931 3.3e-10 69.7 54 64.8
Pp3c24_4680 Physcomitrium patens HOM05M000971 ORTHO05M000931 3.3e-10 69.7 46 69.6
Sspon.05G0011470-2C Saccharum spontaneum HOM05M000971 ORTHO05M000931 3.3e-10 69.7 44 72.7
DDU002G0240 Dioscorea dumetorum HOM05M000971 ORTHO05M001259 4.3e-10 69.3 46 71.7
AagrBONN_evm.TU.Sc2ySwM_344.357 Anthoceros agrestis HOM05M000971 ORTHO05M000931 5.6e-10 68.9 45 68.9
evm.TU.AsparagusV1_07.2453.V1.1 Asparagus officinalis HOM05M000971 ORTHO05M000931 5.6e-10 68.9 54 63.0
SEGI_13101 Sequoiadendron giganteum HOM05M000971 ORTHO05M000931 5.6e-10 68.9 83 44.6
Spipo16G0018000 Spirodela polyrhiza HOM05M002255 ORTHO05M002667 5.6e-10 68.9 46 67.4
Zm00007a00028299 Zea mays B104 HOM05M000971 ORTHO05M020373 5.6e-10 68.9 45 73.3
Zjn_sc00058.1.g02780.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM05M000971 ORTHO05M000931 5.6e-10 68.9 42 78.6
Ot_Chr6_g08612 Oropetium thomaeum HOM05M000971 ORTHO05M000931 9.6e-10 68.2 51 66.7
Asa1G02344 Allium sativum HOM05M000971 ORTHO05M000931 1.3e-09 67.8 46 65.2
Aco003194 Ananas comosus HOM05M000971 ORTHO05M000931 1.3e-09 67.8 36 88.9
CALSI_Maker00039198 Calamus simplicifolius HOM05M000971 ORTHO05M000931 1.3e-09 67.8 45 68.9
HPP92_008342 Vanilla planifolia HOM05M000971 ORTHO05M000931 1.3e-09 67.8 51 64.7
AT1G76010 Arabidopsis thaliana HOM05M000971 ORTHO05M000931 2.1e-09 67.0 55 69.1
evm.TU.AsparagusV1_04.3360.V1.1 Asparagus officinalis HOM05M000971 ORTHO05M000931 2.8e-09 66.6 46 65.2
V3.Lp_chr2_0G16778 Lolium perenne HOM05M000971 ORTHO05M000931 2.8e-09 66.6 189 43.4
SEGI_40940 Sequoiadendron giganteum HOM05M000971 ORTHO05M000931 2.8e-09 66.6 50 66.0
Potri.002G017600 Populus trichocarpa HOM05M000971 ORTHO05M000931 4.8e-09 65.9 44 70.5
Zm00001eb239470 Zea mays B73 HOM05M000971 ORTHO05M020373 4.8e-09 65.9 47 70.2
Zjn_sc00050.1.g00300.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM05M000971 ORTHO05M000931 4.8e-09 65.9 38 84.2
Zm00007a00000981 Zea mays B104 HOM05M010850 ORTHO05M020373 6.2e-09 65.5 45 71.1
Zm00001eb413980 Zea mays B73 HOM05M000971 ORTHO05M020373 1.1e-08 64.7 47 70.2
Zm00007a00044132 Zea mays B104 HOM05M000971 ORTHO05M020373 1.1e-08 64.7 47 70.2
CALSI_Maker00024769 Calamus simplicifolius HOM05M000971 ORTHO05M000931 1.4e-08 64.3 45 68.9
CALSI_Maker00031646 Calamus simplicifolius HOM05M000971 ORTHO05M000931 1.4e-08 64.3 45 68.9
Ma01_g19770 Musa acuminata HOM05M000971 ORTHO05M000931 1.4e-08 64.3 55 58.2
Solyc04g081880.4 Solanum lycopersicum HOM05M000971 ORTHO05M000931 1.8e-08 63.9 43 67.4
Zm00001eb039060 Zea mays B73 HOM05M000971 ORTHO05M000931 1.8e-08 63.9 55 63.6
p5.00_sc00014_p0107 Elaeis guineensis HOM05M000971 ORTHO05M000931 2.4e-08 63.5 44 65.9
EJB05_37985 Eragrostis curvula HOM05M000971 ORTHO05M000931 2.4e-08 63.5 57 57.9
CBR_g49498 Chara braunii HOM05M000971 ORTHO05M000931 3.1e-08 63.2 51 58.8
SMO364G0269 Selaginella moellendorffii HOM05M000971 ORTHO05M000931 3.1e-08 63.2 46 63.0
AT1G20220 Arabidopsis thaliana HOM05M000971 ORTHO05M000931 4.0e-08 62.8 53 62.3
Zosma06g11570 Zostera marina HOM05M000971 ORTHO05M000931 9.0e-08 61.6 54 57.4
SMO134G0143 Selaginella moellendorffii HOM05M000971 ORTHO05M000931 1.5e-07 60.8 46 58.7
MBI17_g35944_MAGBIO Magnolia biondii HOM05M000971 ORTHO05M000931 2.0e-07 60.5 36 80.6
Pp3c23_8810 Physcomitrium patens HOM05M000971 ORTHO05M000931 3.4e-07 59.7 46 63.0
Potri.005G244300 Populus trichocarpa HOM05M000971 ORTHO05M000931 3.4e-07 59.7 45 66.7
SMO169G0052 Selaginella moellendorffii HOM05M000971 ORTHO05M000931 9.9e-07 58.2 50 58.0
TraesCS4B03G0746000 Triticum aestivum HOM05M000971 ORTHO05M000931 9.9e-07 58.2 41 65.9
TRIDC4BG048590 Triticum dicoccoides HOM05M000971 ORTHO05M000931 9.9e-07 58.2 41 65.9
TRITD4Bv1G167400 Triticum turgidum HOM05M000971 ORTHO05M000931 9.9e-07 58.2 41 65.9
Horvu_MOREX_4H01G429700 Hordeum vulgare HOM05M000971 ORTHO05M000931 2.2e-06 57.0 41 63.4
GWHGASIY037779 Secale cereale HOM05M000971 ORTHO05M000931 2.2e-06 57.0 41 63.4
TraesCS4A03G0039400 Triticum aestivum HOM05M000971 ORTHO05M000931 2.2e-06 57.0 41 63.4
TraesCS4D03G0665500 Triticum aestivum HOM05M000971 ORTHO05M000931 2.2e-06 57.0 41 63.4
TRIDC4AG003150 Triticum dicoccoides HOM05M000971 ORTHO05M000931 2.2e-06 57.0 41 63.4
TRITD4Av1G006740 Triticum turgidum HOM05M000971 ORTHO05M000931 2.2e-06 57.0 41 63.4
Asa2G01605 Allium sativum HOM05M000971 ORTHO05M000931 2.9e-06 56.6 51 52.9
Asa8G00422 Allium sativum HOM05M000971 ORTHO05M000931 2.9e-06 56.6 51 52.9
SEGI_16757 Sequoiadendron giganteum HOM05M000971 ORTHO05M000931 2.9e-06 56.6 38 65.8
Zosma03g21360 Zostera marina HOM05M000971 ORTHO05M000931 2.9e-06 56.6 38 71.1
HPP92_022199 Vanilla planifolia HOM05M000971 ORTHO05M000931 3.8e-06 56.2 62 54.8
Bradi1g73960 Brachypodium distachyon HOM05M000971 ORTHO05M000931 4.9e-06 55.8 52 50.0
Spipo16G0049000 Spirodela polyrhiza HOM05M000971 ORTHO05M000931 4.9e-06 55.8 49 49.0


User provided reference genes

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