Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zjn_sc00027.1.g06000.1.am.mkhc Zoysia japonica ssp. nagirizaki HOM05M002690 ORTHO05M003706 0.0e+00 1744.6 997 100.0
EJB05_36202 Eragrostis curvula HOM05M002690 ORTHO05M003706 0.0e+00 1313.5 1443 56.3
Ot_Chr5_g03416 Oropetium thomaeum HOM05M002690 ORTHO05M003706 0.0e+00 1233.8 1491 54.1
Misin16G185700 Miscanthus sinensis HOM05M002690 ORTHO05M003706 0.0e+00 1208.4 1447 51.6
Pahal.3G230500 Panicum hallii HOM05M002690 ORTHO05M003706 0.0e+00 1206.0 1440 52.0
Misin17G185800 Miscanthus sinensis HOM05M002690 ORTHO05M003706 0.0e+00 1194.5 1450 51.2
PH02Gene41547 Phyllostachys edulis HOM05M002690 ORTHO05M003706 0.0e+00 1194.5 1441 51.2
Sspon.07G0005070-2B Saccharum spontaneum HOM05M002690 ORTHO05M003706 0.0e+00 1193.7 1448 51.1
Sobic.009G182600 Sorghum bicolor HOM05M002690 ORTHO05M003706 0.0e+00 1193.7 1450 51.1
Seita.3G193600 Setaria italica HOM05M002690 ORTHO05M003706 0.0e+00 1185.2 1445 51.6
Sspon.07G0005070-1A Saccharum spontaneum HOM05M002690 ORTHO05M003706 0.0e+00 1184.9 1410 50.9
Sevir.3G197900 Setaria viridis HOM05M002690 ORTHO05M003706 0.0e+00 1184.9 1445 51.6
Sspon.07G0005070-4D Saccharum spontaneum HOM05M002690 ORTHO05M003706 0.0e+00 1173.7 1409 51.6
OsKitaake05g197700 Oryza sativa Kitaake HOM05M002690 ORTHO05M003706 0.0e+00 1171.4 1499 51.0
OsR498G0511098300.01 Oryza sativa ssp. indica HOM05M002690 ORTHO05M003706 0.0e+00 1171.0 1499 51.0
Zm00007a00020365 Zea mays B104 HOM05M002690 ORTHO05M003706 0.0e+00 1167.9 1447 50.6
GWHGAORA003413 Cenchrus purpureus HOM05M002690 ORTHO05M003706 0.0e+00 1162.1 1443 50.5
GWHGAORA038406 Cenchrus purpureus HOM05M002690 ORTHO05M003706 0.0e+00 1152.5 1454 49.9
OB05G28890 Oryza brachyantha HOM05M002690 ORTHO05M003706 0.0e+00 1150.2 1457 50.6
Bradi2g21217 Brachypodium distachyon HOM05M002690 ORTHO05M003706 0.0e+00 1144.0 1442 49.2
GWHGAZTO084449 Oryza alta HOM05M002690 ORTHO05M003706 0.0e+00 1143.6 1490 50.6
GWHGAZTO035538 Oryza alta HOM05M002690 ORTHO05M003706 0.0e+00 1139.8 1489 50.4
V3.Lp_chr1_0G16624 Lolium perenne HOM05M002690 ORTHO05M003706 0.0e+00 1133.6 1440 49.0
GWHGAORA063015 Cenchrus purpureus HOM05M002690 ORTHO05M003706 0.0e+00 1125.2 1444 49.4
TraesCS1A03G0773400 Triticum aestivum HOM05M002690 ORTHO05M003706 0.0e+00 1114.8 1399 48.8
TRIDC1AG046350 Triticum dicoccoides HOM05M002690 ORTHO05M003706 0.0e+00 1114.8 1399 48.8
TRITD1Av1G186710 Triticum turgidum HOM05M002690 ORTHO05M003706 0.0e+00 1114.8 1399 48.8
TraesCS1B03G0885100 Triticum aestivum HOM05M002690 ORTHO05M003706 0.0e+00 1105.9 1399 48.5
TRITD1Bv1G175080 Triticum turgidum HOM05M002690 ORTHO05M003706 0.0e+00 1105.9 1399 48.5
Horvu_MOREX_1H01G431900 Hordeum vulgare HOM05M002690 ORTHO05M003706 0.0e+00 1105.1 1399 48.5
AET1Gv20737400 Aegilops tauschii HOM05M002690 ORTHO05M003706 0.0e+00 1104.4 1399 48.5
TRIDC1BG052450 Triticum dicoccoides HOM05M002690 ORTHO05M003706 0.0e+00 1103.2 1398 48.4
TraesCS1D03G0740000 Triticum aestivum HOM05M002690 ORTHO05M003706 0.0e+00 1102.8 1399 48.5
GWHGASIY004063 Secale cereale HOM05M002690 ORTHO05M003706 0.0e+00 1076.6 1429 47.7
GWHGAORA021513 Cenchrus purpureus HOM05M002690 ORTHO05M003706 1.0e-308 1062.8 1428 47.2
Sspon.07G0005070-3C Saccharum spontaneum HOM05M002690 ORTHO05M003706 9.0e-265 916.8 717 69.2
Dexi3B01G0020640 Digitaria exilis HOM05M002690 ORTHO05M003706 2.5e-262 908.7 716 69.6
CALSI_Maker00003378 Calamus simplicifolius HOM05M002690 ORTHO05M003706 7.1e-262 907.1 1481 41.4
Dexi3A01G0020030 Digitaria exilis HOM05M002690 ORTHO05M003706 4.6e-261 904.4 763 67.8
Bradi1g55060 Brachypodium distachyon HOM05M002690 ORTHO05M003706 2.2e-255 885.6 1366 42.4
Misin19G252500 Miscanthus sinensis HOM05M002690 ORTHO05M003706 9.4e-254 880.2 1331 44.3
Ma11_g14260 Musa acuminata HOM05M002690 ORTHO05M003706 4.6e-253 877.9 1416 40.6
Ma02_g00340 Musa acuminata HOM05M002690 ORTHO05M003706 6.1e-253 877.5 1465 41.4
p5.00_sc00086_p0055 Elaeis guineensis HOM05M002690 ORTHO05M003706 1.8e-252 875.9 1421 40.0
HPP92_011291 Vanilla planifolia HOM05M002690 ORTHO05M003706 2.3e-252 875.5 1501 40.6
DDU093G0009 Dioscorea dumetorum HOM05M002690 ORTHO05M003706 2.0e-248 862.4 1451 39.8
DDU524G0287 Dioscorea dumetorum HOM05M002690 ORTHO05M003706 2.0e-248 862.4 1451 39.8
Zm00001eb291590 Zea mays B73 HOM05M002690 ORTHO05M003706 1.3e-247 859.8 1187 49.6
evm.TU.AsparagusV1_08.2941.V1.1 Asparagus officinalis HOM05M002690 ORTHO05M003706 1.9e-246 855.9 1411 39.8
DDU099G0002 Dioscorea dumetorum HOM05M002690 ORTHO05M003706 7.2e-246 854.0 1448 39.4
Aco011504 Ananas comosus HOM05M002690 ORTHO05M003706 4.4e-243 844.7 1406 40.3
V3.Lp_chr7_0.1G1844 Lolium perenne HOM05M002690 ORTHO05M003706 3.1e-241 838.6 1394 40.7
Spipo15G0025800 Spirodela polyrhiza HOM05M002690 ORTHO05M003706 1.3e-239 833.2 1413 39.1
Misin19G252400 Miscanthus sinensis HOM05M002690 ORTHO05M003706 1.8e-233 812.8 1351 41.8
Solyc10g081020.2 Solanum lycopersicum HOM05M002690 ORTHO05M003706 6.3e-226 787.7 1492 38.5
Glyma.03G121000 Glycine max HOM05M002690 ORTHO05M003706 9.4e-222 773.9 1481 38.8
Sspon.07G0030480-1C Saccharum spontaneum HOM05M002690 ORTHO05M003706 3.6e-221 771.9 586 69.3
Asa6G05925 Allium sativum HOM05M002690 ORTHO05M003706 4.4e-219 765.0 1467 36.7
Glyma.19G125600 Glycine max HOM05M002690 ORTHO05M003706 9.8e-219 763.8 1417 37.0
MBI13_g02373_MAGBIO Magnolia biondii HOM05M002690 ORTHO05M003706 4.5e-216 755.0 1359 37.8
Potri.016G029200 Populus trichocarpa HOM05M002690 ORTHO05M003706 1.0e-212 743.8 1448 36.7
Potri.006G031900 Populus trichocarpa HOM05M002690 ORTHO05M003706 2.6e-211 739.2 1438 36.6
Asa6G05935 Allium sativum HOM05M002690 ORTHO05M003706 6.3e-210 734.6 1472 35.6
ATR0782G064 Amborella trichopoda HOM05M002690 ORTHO05M003706 2.6e-203 712.6 1500 36.3
Zosma03g15000 Zostera marina HOM05M002690 ORTHO05M003706 7.8e-200 701.0 1419 34.7
AT1G65440 Arabidopsis thaliana HOM05M002690 ORTHO05M003706 9.2e-193 677.6 1381 34.8
Aco000615 Ananas comosus HOM05M002690 ORTHO05M003706 2.9e-186 656.0 1434 34.7
Asa3G04822 Allium sativum HOM05M002690 ORTHO05M003706 1.0e-183 647.5 738 50.5
Misin18G239100 Miscanthus sinensis HOM05M002690 ORTHO05M003706 2.3e-183 646.4 1311 38.2
SEGI_00617 Sequoiadendron giganteum HOM05M002690 ORTHO05M003706 3.4e-179 632.5 1472 33.7
SEGI_20723 Sequoiadendron giganteum HOM05M002690 ORTHO05M003706 5.8e-179 631.7 1501 33.5
Sspon.08G0003230-1A Saccharum spontaneum HOM05M002690 ORTHO05M003706 4.2e-161 572.4 943 41.0
Sspon.08G0003230-2B Saccharum spontaneum HOM05M002690 ORTHO05M003706 1.9e-158 563.5 933 41.6
Sspon.08G0003230-3C Saccharum spontaneum HOM05M002690 ORTHO05M003706 3.8e-154 549.3 476 63.9
Asa6G03633 Allium sativum HOM05M002690 ORTHO05M003706 3.0e-151 539.7 1253 31.2
AT1G63210 Arabidopsis thaliana HOM05M002690 ORTHO05M003706 8.2e-149 531.6 1214 31.2
SEGI_15393 Sequoiadendron giganteum HOM05M002690 ORTHO05M003706 6.9e-148 528.5 1462 29.5
CDE08G1380 Ceratophyllum demersum HOM05M002690 ORTHO05M003706 2.0e-147 526.9 1043 35.1
CDE09G1137 Ceratophyllum demersum HOM05M002690 ORTHO05M003706 6.3e-141 505.4 681 51.2
SMO364G0195 Selaginella moellendorffii HOM05M002690 ORTHO05M003706 6.1e-136 488.8 1273 29.5
Potri.001G034300 Populus trichocarpa HOM05M002690 ORTHO05M003706 7.9e-136 488.4 1404 29.0
Pp3c5_23930 Physcomitrium patens HOM05M002690 ORTHO05M003706 3.7e-125 453.0 1346 28.3
Mapoly0025s0106 Marchantia polymorpha HOM05M002690 ORTHO05M003706 5.0e-122 442.6 1417 27.7
Asa7G05441 Allium sativum HOM05M002690 ORTHO05M003706 4.2e-121 439.5 707 39.5
MBI11_g01739_MAGBIO Magnolia biondii HOM05M002690 ORTHO05M003706 6.7e-119 432.2 920 39.0
AagrBONN_evm.TU.Sc2ySwM_228.4939 Anthoceros agrestis HOM05M002690 ORTHO05M003706 1.4e-116 424.5 1472 27.3
PH02Gene02362 Phyllostachys edulis HOM05M002690 ORTHO05M003706 1.8e-116 424.1 428 59.1
PH02Gene35110 Phyllostachys edulis HOM05M002690 ORTHO05M003706 1.5e-110 404.4 355 63.4
PH02Gene05931 Phyllostachys edulis HOM05M002690 ORTHO05M003706 2.6e-110 403.7 373 61.4
Glyma.06G312200 Glycine max HOM05M002690 ORTHO05M003706 5.7e-110 402.5 1442 28.2
Os05g0494900 Oryza sativa ssp. japonica HOM05M002690 ORTHO05M003706 1.7e-109 401.0 266 81.2
CBR_g879 Chara braunii HOM05M002690 ORTHO05M003706 6.3e-109 399.1 1435 26.6
CDE09G0935 Ceratophyllum demersum HOM05M002690 ORTHO05M003706 1.9e-89 334.3 247 69.2
MBI19_g32644_MAGBIO Magnolia biondii HOM05M002690 ORTHO05M003706 7.5e-86 322.4 376 51.1
Pp3c5_24480 Physcomitrium patens HOM05M002690 ORTHO05M003706 4.0e-71 273.5 1381 22.9
Sspon.08G0018200-1B Saccharum spontaneum HOM05M002690 ORTHO05M003706 6.8e-71 272.7 249 63.1
HPP92_011270 Vanilla planifolia HOM05M002690 ORTHO05M003706 4.9e-69 266.5 155 78.7
CBR_g876 Chara braunii HOM05M002690 ORTHO05M003706 2.4e-68 264.2 1347 22.6
PH02Gene05932 Phyllostachys edulis HOM05M002690 ORTHO05M016843 6.6e-58 229.6 177 72.3
HPP92_011268 Vanilla planifolia HOM05M002690 ORTHO05M003706 3.2e-52 210.7 199 55.3
Asa3G04821 Allium sativum HOM05M002690 ORTHO05M003706 6.0e-51 206.5 130 73.1
HPP92_011269 Vanilla planifolia HOM05M002690 ORTHO05M003706 4.0e-47 193.7 125 72.8
CDE08G0416 Ceratophyllum demersum HOM05M002690 ORTHO05M003706 5.8e-46 189.9 412 42.5
Sspon.07G0030440-1C Saccharum spontaneum HOM05M002690 ORTHO05M029644 3.9e-42 177.2 89 92.1
PH02Gene43852 Phyllostachys edulis HOM05M002690 ORTHO05M016843 6.7e-42 176.4 175 61.7
MBI19_g47879_MAGBIO Magnolia biondii HOM05M002690 ORTHO05M003706 9.6e-41 172.6 232 50.4
MCO05G283 Micromonas commoda HOM05M002690 ORTHO05M003706 3.1e-39 167.5 831 25.8
Asa7G07476 Allium sativum HOM05M002690 ORTHO05M015740 2.0e-38 164.9 162 48.1
Bradi1g55053 Brachypodium distachyon HOM05M002690 ORTHO05M016843 9.3e-28 129.4 123 60.2
PRCOL_00004004 Prasinoderma coloniale HOM05M002690 ORTHO05M003706 1.6e-27 128.6 198 37.9
Asa0G01533 Allium sativum HOM05M002690 ORTHO05M015740 1.8e-26 125.2 135 44.4
Asa2G04735 Allium sativum HOM05M002690 ORTHO05M015740 1.8e-26 125.2 135 44.4
Asa5G03186 Allium sativum HOM05M002690 ORTHO05M015740 1.8e-26 125.2 135 44.4
Asa6G07149 Allium sativum HOM05M002690 ORTHO05M015740 1.8e-26 125.2 135 44.4
Asa7G05509 Allium sativum HOM05M002690 ORTHO05M015740 1.8e-26 125.2 135 44.4
MBI02_g14198_MAGBIO Magnolia biondii HOM05M002690 ORTHO05M003706 2.8e-24 117.9 131 52.7
HPP92_011267 Vanilla planifolia HOM05M002690 ORTHO05M016843 1.4e-23 115.5 215 50.7
PH02Gene35333 Phyllostachys edulis HOM05M002690 ORTHO05M016843 6.9e-23 113.2 96 67.7
SEGI_17703 Sequoiadendron giganteum HOM05M002690 ORTHO05M003706 2.0e-22 111.7 70 74.3
Asa3G00571 Allium sativum HOM05M002690 ORTHO05M015740 1.3e-21 109.0 137 38.7
PH02Gene35109 Phyllostachys edulis HOM05M002690 ORTHO05M016843 1.7e-21 108.6 78 71.8
MBI18_g13239_MAGBIO Magnolia biondii HOM05M000009 ORTHO05M000029 1.4e-20 105.5 152 42.1
Sspon.08G0020870-1B Saccharum spontaneum HOM05M000218 ORTHO05M000420 1.9e-20 105.1 79 72.2
MBI19_g32643_MAGBIO Magnolia biondii HOM05M002690 ORTHO05M029644 2.0e-17 95.1 114 49.1
Glyma.04G126400 Glycine max HOM05M002690 ORTHO05M015740 1.6e-11 75.5 355 25.9
Asa7G05439 Allium sativum HOM05M002690 ORTHO05M003706 6.3e-08 63.5 44 72.7
MBI19_g32642_MAGBIO Magnolia biondii HOM05M002690 ORTHO05M003706 3.1e-07 61.2 38 78.9
Cre09.g403182 Chlamydomonas reinhardtii HOM05M002690 ORTHO05M003706 2.0e-06 58.5 291 35.7


User provided reference genes

Program Settings