Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zjn_sc00022.1.g04730.1.am.mkhc Zoysia japonica ssp. nagirizaki HOM05M000972 ORTHO05M002154 3.3e-136 487.6 255 100.0
EJB05_19593 Eragrostis curvula HOM05M000972 ORTHO05M002154 5.5e-123 443.7 255 91.0
Sspon.04G0023440-2C Saccharum spontaneum HOM05M000972 ORTHO05M002154 2.1e-122 441.8 255 90.2
Sspon.04G0023440-3D Saccharum spontaneum HOM05M000972 ORTHO05M002154 2.1e-122 441.8 255 90.2
Sobic.004G274700 Sorghum bicolor HOM05M000972 ORTHO05M002154 4.7e-122 440.7 255 90.2
Misin07G451600 Miscanthus sinensis HOM05M000972 ORTHO05M002154 1.0e-121 439.5 255 89.4
Ot_Chr1_g19375 Oropetium thomaeum HOM05M000972 ORTHO05M002154 1.4e-121 439.1 255 89.8
Dexi1A01G0023840 Digitaria exilis HOM05M000972 ORTHO05M002154 1.8e-121 438.7 256 89.1
Dexi1B01G0022900 Digitaria exilis HOM05M000972 ORTHO05M002154 8.8e-121 436.4 256 88.7
Pahal.1G356000 Panicum hallii HOM05M000972 ORTHO05M002154 1.5e-120 435.6 256 88.3
Sevir.1G286000 Setaria viridis HOM05M000972 ORTHO05M002154 7.4e-120 433.3 254 88.6
Sspon.04G0023440-1B Saccharum spontaneum HOM05M000972 ORTHO05M002154 2.2e-119 431.8 267 85.8
Seita.1G280500 Setaria italica HOM05M000972 ORTHO05M002154 2.8e-119 431.4 254 88.2
GWHGAORA024879 Cenchrus purpureus HOM05M000972 ORTHO05M002154 1.1e-118 429.5 257 86.0
PH02Gene03811 Phyllostachys edulis HOM05M000972 ORTHO05M002154 7.0e-118 426.8 256 86.3
Zm00007a00022796 Zea mays B104 HOM05M000972 ORTHO05M002154 2.6e-117 424.9 266 84.2
OB02G35850 Oryza brachyantha HOM05M000972 ORTHO05M002154 5.9e-117 423.7 256 86.3
OsKitaake02g294400 Oryza sativa Kitaake HOM05M000972 ORTHO05M002154 3.6e-114 414.5 256 84.8
Os02g0693500 Oryza sativa ssp. japonica HOM05M000972 ORTHO05M002154 3.6e-114 414.5 256 84.8
OsR498G0204580600.01 Oryza sativa ssp. indica HOM05M000972 ORTHO05M002154 8.0e-114 413.3 256 84.4
GWHGAZTO071857 Oryza alta HOM05M000972 ORTHO05M002154 2.3e-113 411.8 256 84.0
PH02Gene46303 Phyllostachys edulis HOM05M000972 ORTHO05M002154 3.0e-113 411.4 255 83.1
Ot_Chr6_g01546 Oropetium thomaeum HOM05M000972 ORTHO05M002154 5.2e-113 410.6 255 83.1
Sevir.7G231200 Setaria viridis HOM05M000972 ORTHO05M002154 2.0e-112 408.7 255 82.7
Seita.7G219500 Setaria italica HOM05M000972 ORTHO05M002154 5.7e-112 407.1 255 82.4
OsKitaake04g244300 Oryza sativa Kitaake HOM05M000972 ORTHO05M002154 7.4e-112 406.8 255 81.6
OsR498G0409196800.01 Oryza sativa ssp. indica HOM05M000972 ORTHO05M002154 7.4e-112 406.8 255 81.6
Os04g0592600 Oryza sativa ssp. japonica HOM05M000972 ORTHO05M002154 7.4e-112 406.8 255 81.6
Zm00007a00017569 Zea mays B104 HOM05M000972 ORTHO05M002154 9.7e-112 406.4 255 81.6
GWHGAORA021627 Cenchrus purpureus HOM05M000972 ORTHO05M002154 1.3e-111 406.0 255 82.0
GWHGASIY011113 Secale cereale HOM05M000972 ORTHO05M002154 1.3e-111 406.0 255 82.4
Zm00001eb429920 Zea mays B73 HOM05M000972 ORTHO05M002154 1.7e-111 405.6 255 81.6
GWHGAORA021641 Cenchrus purpureus HOM05M000972 ORTHO05M002154 2.2e-111 405.2 255 82.0
OB04G30500 Oryza brachyantha HOM05M000972 ORTHO05M002154 2.8e-111 404.8 255 81.2
Sspon.07G0015700-1A Saccharum spontaneum HOM05M000972 ORTHO05M002154 2.8e-111 404.8 255 81.6
Sspon.07G0015700-2B Saccharum spontaneum HOM05M000972 ORTHO05M002154 2.8e-111 404.8 255 81.6
Sspon.07G0015700-3C Saccharum spontaneum HOM05M000972 ORTHO05M002154 2.8e-111 404.8 255 81.6
Zm00001eb072290 Zea mays B73 HOM05M000972 ORTHO05M002154 2.8e-111 404.8 255 81.6
Zm00007a00016099 Zea mays B104 HOM05M000972 ORTHO05M002154 2.8e-111 404.8 255 81.6
EJB05_39493 Eragrostis curvula HOM05M000972 ORTHO05M002154 6.3e-111 403.7 250 82.8
Horvu_MOREX_2H01G653800 Hordeum vulgare HOM05M000972 ORTHO05M002154 8.2e-111 403.3 255 81.6
Pahal.7G273400 Panicum hallii HOM05M000972 ORTHO05M002154 8.2e-111 403.3 255 81.6
GWHGAORA062834 Cenchrus purpureus HOM05M000972 ORTHO05M002154 1.1e-110 402.9 255 81.2
TraesCS2B03G1184800 Triticum aestivum HOM05M000972 ORTHO05M002154 1.1e-110 402.9 255 81.6
AET2Gv20988400 Aegilops tauschii HOM05M000972 ORTHO05M002154 1.8e-110 402.1 255 81.6
Misin11G201100 Miscanthus sinensis HOM05M000972 ORTHO05M002154 1.8e-110 402.1 255 80.8
TraesCS2D03G1000700 Triticum aestivum HOM05M000972 ORTHO05M002154 1.8e-110 402.1 255 81.6
GWHGAZTO080877 Oryza alta HOM05M000972 ORTHO05M002154 2.4e-110 401.7 255 80.8
Sobic.006G198500 Sorghum bicolor HOM05M000972 ORTHO05M002154 2.4e-110 401.7 255 80.8
TraesCS2A03G1060400 Triticum aestivum HOM05M000972 ORTHO05M002154 3.1e-110 401.4 255 81.2
Bradi5g20030 Brachypodium distachyon HOM05M000972 ORTHO05M002154 7.0e-110 400.2 255 80.8
Misin08G246900 Miscanthus sinensis HOM05M000972 ORTHO05M002154 2.2e-108 395.2 255 82.7
Zm00001eb251300 Zea mays B73 HOM05M000972 ORTHO05M002154 2.2e-108 395.2 256 82.4
Horvu_MOREX_2H01G323900 Hordeum vulgare HOM05M000972 ORTHO05M002154 1.2e-106 389.4 255 79.2
Sspon.07G0015700-4D Saccharum spontaneum HOM05M000972 ORTHO05M002154 1.8e-102 375.6 255 77.6
Aco012947 Ananas comosus HOM05M000972 ORTHO05M002154 2.7e-101 371.7 246 76.4
TRIDC2BG068150 Triticum dicoccoides HOM05M000972 ORTHO05M002154 1.7e-100 369.0 234 81.2
TRIDC2AG063960 Triticum dicoccoides HOM05M000972 ORTHO05M002154 6.5e-100 367.1 233 81.1
Misin12G216300 Miscanthus sinensis HOM05M000972 ORTHO05M002154 1.2e-98 362.8 248 77.4
TRITD2Bv1G217800 Triticum turgidum HOM05M000972 ORTHO05M006735 4.7e-98 360.9 223 83.0
TRITD2Av1G255400 Triticum turgidum HOM05M000972 ORTHO05M006735 6.1e-98 360.5 222 83.3
Ma04_g19510 Musa acuminata HOM05M000972 ORTHO05M002154 8.0e-98 360.1 248 75.4
Dexi7A01G0017320 Digitaria exilis HOM05M000972 ORTHO05M002154 3.0e-97 358.2 218 83.9
p5.00_sc00696_p0002 Elaeis guineensis HOM05M000972 ORTHO05M002154 3.0e-97 358.2 238 76.9
Spipo11G0009900 Spirodela polyrhiza HOM05M000972 ORTHO05M002154 4.0e-97 357.8 241 76.8
Dexi7B01G0017980 Digitaria exilis HOM05M000972 ORTHO05M002154 6.8e-97 357.1 218 83.5
HPP92_014660 Vanilla planifolia HOM05M000972 ORTHO05M002154 3.4e-96 354.8 245 74.3
p5.00_sc00002_p0078 Elaeis guineensis HOM05M000972 ORTHO05M002154 7.5e-96 353.6 245 75.1
Ma04_g33900 Musa acuminata HOM05M000972 ORTHO05M002154 2.2e-95 352.1 248 74.2
Glyma.01G016800 Glycine max HOM05M000972 ORTHO05M002154 4.8e-95 350.9 244 73.4
evm.TU.AsparagusV1_10.113.V1.1 Asparagus officinalis HOM05M000972 ORTHO05M002154 6.3e-95 350.5 257 71.2
Glyma.09G206000 Glycine max HOM05M000972 ORTHO05M002154 1.1e-94 349.7 239 74.5
Asa6G02631 Allium sativum HOM05M000972 ORTHO05M002154 1.8e-94 349.0 247 72.9
Potri.001G140200 Populus trichocarpa HOM05M000972 ORTHO05M002154 5.4e-94 347.4 239 73.6
Solyc08g076670.3 Solanum lycopersicum HOM05M000972 ORTHO05M002154 2.7e-93 345.1 238 73.1
ATR0665G380 Amborella trichopoda HOM05M000972 ORTHO05M002154 7.7e-93 343.6 233 75.5
CALSI_Maker00034794 Calamus simplicifolius HOM05M000972 ORTHO05M002154 1.7e-92 342.4 215 80.5
Potri.003G094000 Populus trichocarpa HOM05M000972 ORTHO05M002154 3.8e-92 341.3 239 72.8
AT4G17790 Arabidopsis thaliana HOM05M000972 ORTHO05M002154 9.5e-91 336.7 232 72.8
Horvu_MOREX_7H01G307800 Hordeum vulgare HOM05M000972 ORTHO05M002154 3.6e-90 334.7 255 70.6
Ma09_g23780 Musa acuminata HOM05M000972 ORTHO05M002154 6.1e-90 334.0 243 70.4
Ma04_g12280 Musa acuminata HOM05M000972 ORTHO05M002154 1.0e-89 333.2 224 75.9
Zosma06g01460 Zostera marina HOM05M000972 ORTHO05M002154 2.6e-88 328.6 231 71.0
DDU613G0407 Dioscorea dumetorum HOM05M000972 ORTHO05M002154 4.9e-87 324.3 214 78.0
GWHGAZTO031193 Oryza alta HOM05M000972 ORTHO05M002154 1.4e-86 322.8 204 80.9
MBI04_g20347_MAGBIO Magnolia biondii HOM05M000972 ORTHO05M002154 5.4e-86 320.9 242 70.2
Zjn_sc00007.1.g08270.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM05M000972 ORTHO05M002154 3.5e-85 318.2 266 69.5
Horvu_MOREX_2H01G341600 Hordeum vulgare HOM05M000972 ORTHO05M002154 1.3e-84 316.2 199 80.9
SEGI_12492 Sequoiadendron giganteum HOM05M000972 ORTHO05M002154 1.7e-84 315.8 243 63.4
Solyc06g065400.3 Solanum lycopersicum HOM05M000972 ORTHO05M002154 1.0e-81 306.6 241 62.7
p5.00_sc00001_p0843 Elaeis guineensis HOM05M000972 ORTHO05M002154 1.4e-81 306.2 246 61.8
Potri.013G113000 Populus trichocarpa HOM05M000972 ORTHO05M002154 1.4e-81 306.2 237 64.1
Glyma.20G175400 Glycine max HOM05M000972 ORTHO05M002154 3.1e-81 305.1 244 61.5
Glyma.10G216600 Glycine max HOM05M000972 ORTHO05M002154 5.2e-81 304.3 244 61.9
p5.00_sc00031_p0139 Elaeis guineensis HOM05M000972 ORTHO05M002154 6.8e-81 303.9 246 61.8
Potri.019G083500 Populus trichocarpa HOM05M000972 ORTHO05M002154 6.8e-81 303.9 240 62.9
Aco028764 Ananas comosus HOM05M000972 ORTHO05M002154 8.9e-81 303.5 247 61.9
Ma06_g07870 Musa acuminata HOM05M000972 ORTHO05M002154 2.0e-80 302.4 244 61.9
Asa7G05466 Allium sativum HOM05M000972 ORTHO05M002154 2.9e-79 298.5 242 61.2
Ma06_g05700 Musa acuminata HOM05M000972 ORTHO05M002154 2.9e-79 298.5 244 61.5
Ma07_g11650 Musa acuminata HOM05M000972 ORTHO05M002154 2.9e-79 298.5 236 61.4
DDU272G0262 Dioscorea dumetorum HOM05M000972 ORTHO05M002154 4.9e-79 297.7 242 60.3
Solyc11g018620.3 Solanum lycopersicum HOM05M000972 ORTHO05M002154 1.1e-78 296.6 239 61.9
CDE02G2095 Ceratophyllum demersum HOM05M000972 ORTHO05M002154 1.9e-78 295.8 238 62.2
CDE08G0639 Ceratophyllum demersum HOM05M000972 ORTHO05M002154 7.0e-78 293.9 236 61.9
evm.TU.AsparagusV1_03.1443.V1.1 Asparagus officinalis HOM05M000972 ORTHO05M002154 1.2e-77 293.1 214 66.8
Spipo20G0017900 Spirodela polyrhiza HOM05M000972 ORTHO05M002154 1.2e-77 293.1 243 56.4
HPP92_019220 Vanilla planifolia HOM05M000972 ORTHO05M002154 2.7e-77 292.0 236 61.4
AT4G09580 Arabidopsis thaliana HOM05M000972 ORTHO05M002154 3.5e-77 291.6 244 58.2
AT1G71940 Arabidopsis thaliana HOM05M000972 ORTHO05M002154 2.3e-76 288.9 218 65.1
GWHGAORA060317 Cenchrus purpureus HOM05M000972 ORTHO05M002154 6.6e-76 287.3 260 64.2
Zosma01g19460 Zostera marina HOM05M000972 ORTHO05M002154 6.6e-76 287.3 244 59.0
Ot_Chr4_g08069 Oropetium thomaeum HOM05M000972 ORTHO05M002154 8.6e-76 287.0 235 61.3
CDE06G1585 Ceratophyllum demersum HOM05M000972 ORTHO05M002154 1.5e-75 286.2 198 74.7
Sobic.001G122500 Sorghum bicolor HOM05M000972 ORTHO05M002154 1.5e-75 286.2 235 61.3
Pahal.9G122400 Panicum hallii HOM05M000972 ORTHO05M002154 2.5e-75 285.4 235 61.3
Bradi1g10980 Brachypodium distachyon HOM05M000972 ORTHO05M002154 7.3e-75 283.9 235 61.3
Zm00001eb054370 Zea mays B73 HOM05M000972 ORTHO05M002154 1.2e-74 283.1 235 60.9
Seita.9G124500 Setaria italica HOM05M000972 ORTHO05M002154 2.8e-74 282.0 235 60.4
Sevir.9G123300 Setaria viridis HOM05M000972 ORTHO05M002154 2.8e-74 282.0 235 60.4
Horvu_MOREX_4H01G040600 Hordeum vulgare HOM05M000972 ORTHO05M002154 3.6e-74 281.6 235 60.0
GWHGASIY018321 Secale cereale HOM05M000972 ORTHO05M002154 3.6e-74 281.6 235 60.0
SMO118G0527 Selaginella moellendorffii HOM05M000972 ORTHO05M002154 3.6e-74 281.6 242 59.9
TraesCS4A03G0705100 Triticum aestivum HOM05M000972 ORTHO05M002154 3.6e-74 281.6 235 60.0
TRIDC4AG042400 Triticum dicoccoides HOM05M000972 ORTHO05M002154 3.6e-74 281.6 235 60.0
Zm00007a00025475 Zea mays B104 HOM05M000972 ORTHO05M002154 3.6e-74 281.6 235 60.9
AET4Gv20077400 Aegilops tauschii HOM05M000972 ORTHO05M002154 4.7e-74 281.2 235 60.0
TraesCS4D03G0065000 Triticum aestivum HOM05M000972 ORTHO05M002154 4.7e-74 281.2 235 60.0
OsR498G0306887100.01 Oryza sativa ssp. indica HOM05M000972 ORTHO05M002154 1.4e-73 279.6 230 61.7
TraesCS4B03G0089900 Triticum aestivum HOM05M000972 ORTHO05M002154 3.1e-73 278.5 230 60.4
Pp3c16_5420 Physcomitrium patens HOM05M000972 ORTHO05M002154 4.0e-73 278.1 234 59.4
Pp3c5_9530 Physcomitrium patens HOM05M000972 ORTHO05M002154 4.0e-73 278.1 216 62.5
V3.Lp_chr4_0G7314 Lolium perenne HOM05M000972 ORTHO05M002154 8.9e-73 276.9 230 60.4
Mapoly0001s0510 Marchantia polymorpha HOM05M000972 ORTHO05M002154 3.4e-72 275.0 235 59.6
OsKitaake03g306700 Oryza sativa Kitaake HOM05M000972 ORTHO05M002154 5.8e-72 274.2 219 62.6
Os03g0703900 Oryza sativa ssp. japonica HOM05M000972 ORTHO05M002154 5.8e-72 274.2 219 62.6
AagrBONN_evm.TU.Sc2ySwM_362.1263 Anthoceros agrestis HOM05M000972 ORTHO05M002154 7.5e-72 273.9 245 58.0
EJB05_04967 Eragrostis curvula HOM05M000972 ORTHO05M002154 9.8e-72 273.5 223 62.3
ATR0584G036 Amborella trichopoda HOM05M000972 ORTHO05M002154 1.3e-71 273.1 202 67.8
SEGI_15843 Sequoiadendron giganteum HOM05M000972 ORTHO05M002154 2.2e-71 272.3 204 67.2
TRIDC4BG006580 Triticum dicoccoides HOM05M000972 ORTHO05M002154 6.4e-71 270.8 204 64.7
OB03G38200 Oryza brachyantha HOM05M000972 ORTHO05M002154 8.3e-71 270.4 220 62.3
Sspon.01G0025880-1A Saccharum spontaneum HOM05M000972 ORTHO05M002154 8.3e-71 270.4 239 59.8
Misin01G113500 Miscanthus sinensis HOM05M000972 ORTHO05M002154 1.4e-70 269.6 265 54.3
Dexi5B01G0040090 Digitaria exilis HOM05M000972 ORTHO05M002154 4.1e-70 268.1 157 86.6
MBI09_g40925_MAGBIO Magnolia biondii HOM05M000972 ORTHO05M002154 7.0e-70 267.3 192 65.6
Sspon.01G0025880-2B Saccharum spontaneum HOM05M000972 ORTHO05M002154 4.3e-67 258.1 235 57.9
Sspon.01G0025880-3D Saccharum spontaneum HOM05M000972 ORTHO05M002154 4.3e-67 258.1 235 57.9
MBI09_g01932_MAGBIO Magnolia biondii HOM05M000972 ORTHO05M002154 1.8e-65 252.7 176 68.8
GWHGAZTO026215 Oryza alta HOM05M000972 ORTHO05M002154 2.3e-65 252.3 206 62.6
Horvu_MOREX_7H01G115700 Hordeum vulgare HOM05M000972 ORTHO05M002154 8.9e-65 250.4 153 85.6
Zjn_sc00023.1.g01770.1.am.mkhc Zoysia japonica ssp. nagirizaki HOM05M000972 ORTHO05M002154 8.9e-65 250.4 255 57.3
Zjn_sc00004.1.g08780.1.am.mkhc Zoysia japonica ssp. nagirizaki HOM05M000972 ORTHO05M002154 5.8e-64 247.7 255 56.1
PH02Gene29985 Phyllostachys edulis HOM05M000972 ORTHO05M002154 8.3e-63 243.8 192 64.1
GWHGAZTO076158 Oryza alta HOM05M000972 ORTHO05M005533 7.1e-62 240.7 193 63.2
AagrBONN_evm.TU.Sc2ySwM_368.1598 Anthoceros agrestis HOM05M000972 ORTHO05M002154 1.5e-59 233.0 221 53.8
CALSI_Maker00013478 Calamus simplicifolius HOM05M000972 ORTHO05M002154 6.2e-58 227.6 246 51.2
PH02Gene09955 Phyllostachys edulis HOM05M000972 ORTHO05M005533 6.4e-55 217.6 149 71.8
Pp3c27_2420 Physcomitrium patens HOM05M000972 ORTHO05M002154 1.0e-52 210.3 236 46.2
GWHGAORA051299 Cenchrus purpureus HOM05M000972 ORTHO05M002154 5.8e-48 194.5 235 46.0
GWHGAORA062883 Cenchrus purpureus HOM05M000972 ORTHO05M002154 2.3e-44 182.6 223 51.1
HPP92_027698 Vanilla planifolia HOM05M000972 ORTHO05M002154 3.9e-44 181.8 156 61.5
Mapoly0031s0181 Marchantia polymorpha HOM05M000972 ORTHO05M002154 7.3e-43 177.6 206 45.1
Mapoly0031s0177 Marchantia polymorpha HOM05M000972 ORTHO05M002154 2.8e-42 175.6 214 45.3
CALSI_Maker00018117 Calamus simplicifolius HOM05M000972 ORTHO05M002154 3.1e-41 172.2 146 60.3
SMO339G0070 Selaginella moellendorffii HOM05M000972 ORTHO05M002154 1.2e-40 170.2 206 41.7
PRCOL_00001717 Prasinoderma coloniale HOM05M000972 ORTHO05M002154 1.9e-38 162.9 212 43.9
Dexi9A01G0011900 Digitaria exilis HOM05M000972 ORTHO05M002154 3.1e-33 145.6 235 39.6
AagrBONN_evm.TU.Sc2ySwM_344.2249 Anthoceros agrestis HOM05M001832 ORTHO05M001858 4.0e-33 145.2 187 40.1
Dexi9B01G0016420 Digitaria exilis HOM05M000972 ORTHO05M002154 4.0e-33 145.2 235 39.6
CALSI_Maker00013243 Calamus simplicifolius HOM05M000972 ORTHO05M002154 5.8e-32 141.4 103 65.0
CALSI_Maker00018115 Calamus simplicifolius HOM05M000972 ORTHO05M002154 1.4e-30 136.7 108 60.2
CBR_g6384 Chara braunii HOM05M000972 ORTHO05M002154 1.3e-28 130.2 155 44.5
HPP92_027705 Vanilla planifolia HOM05M000972 ORTHO05M002154 9.7e-19 97.4 96 53.1
GWHGAORA019327 Cenchrus purpureus HOM05M000972 ORTHO05M002154 9.0e-17 90.9 155 38.1
Zjn_sc00023.1.g01775.1.br Zoysia japonica ssp. nagirizaki HOM05M000972 ORTHO05M002154 1.2e-16 90.5 54 79.6


User provided reference genes

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