Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zjn_sc00018.1.g06570.1.am.mkhc Zoysia japonica ssp. nagirizaki HOM05M002993 ORTHO05M008457 3.1e-196 687.6 363 100.0
EJB05_42920 Eragrostis curvula HOM05M002993 ORTHO05M008457 4.4e-150 534.3 515 61.7
Ot_Chr2_g06000 Oropetium thomaeum HOM05M002993 ORTHO05M008457 5.4e-148 527.3 514 61.1
Dexi2B01G0015780 Digitaria exilis HOM05M002993 ORTHO05M008457 3.0e-146 521.5 518 60.4
Dexi2A01G0016810 Digitaria exilis HOM05M002993 ORTHO05M008457 6.6e-146 520.4 519 60.3
GWHGAORA008217 Cenchrus purpureus HOM05M002993 ORTHO05M008457 2.1e-144 515.4 499 61.5
GWHGAORA064649 Cenchrus purpureus HOM05M002993 ORTHO05M008457 3.7e-141 504.6 516 59.3
Misin04G177600 Miscanthus sinensis HOM05M002993 ORTHO05M008457 4.9e-141 504.2 521 59.1
Zm00001eb099100 Zea mays B73 HOM05M002993 ORTHO05M008457 1.1e-140 503.1 515 59.6
Misin03G162200 Miscanthus sinensis HOM05M002993 ORTHO05M008457 3.2e-140 501.5 517 58.0
PH02Gene27403 Phyllostachys edulis HOM05M002993 ORTHO05M008457 7.8e-139 496.9 512 56.2
Sobic.002G193500 Sorghum bicolor HOM05M002993 ORTHO05M008457 7.8e-139 496.9 510 59.8
Seita.2G196300 Setaria italica HOM05M002993 ORTHO05M008457 6.8e-135 483.8 517 58.4
Sevir.2G204000 Setaria viridis HOM05M002993 ORTHO05M008457 1.5e-134 482.6 515 58.4
TraesCS5B03G0535500 Triticum aestivum HOM05M002993 ORTHO05M008457 4.4e-134 481.1 512 56.6
TRITD5Bv1G122660 Triticum turgidum HOM05M002993 ORTHO05M008457 4.4e-134 481.1 512 56.6
TRIDC5BG034470 Triticum dicoccoides HOM05M002993 ORTHO05M008457 5.8e-134 480.7 512 56.6
TraesCS5A03G0525000 Triticum aestivum HOM05M002993 ORTHO05M008457 7.5e-134 480.3 512 56.4
TraesCS5D03G0490100 Triticum aestivum HOM05M002993 ORTHO05M008457 1.4e-132 476.1 512 56.2
Horvu_MOREX_5H01G343500 Hordeum vulgare HOM05M002993 ORTHO05M008457 1.9e-132 475.7 514 56.6
GWHGASIY026072 Secale cereale HOM05M002993 ORTHO05M008457 6.0e-131 470.7 513 56.1
Bradi4g29630 Brachypodium distachyon HOM05M002993 ORTHO05M008457 7.8e-131 470.3 511 55.6
Pahal.2G254900 Panicum hallii HOM05M002993 ORTHO05M008457 3.3e-129 464.9 307 80.1
OsKitaake09g088500 Oryza sativa Kitaake HOM05M002993 ORTHO05M008457 4.4e-126 454.5 518 54.6
Os09g0394100 Oryza sativa ssp. japonica HOM05M002993 ORTHO05M008457 4.4e-126 454.5 518 54.6
AET5Gv20494600 Aegilops tauschii HOM05M002993 ORTHO05M008457 4.1e-124 448.0 306 80.1
GWHGAZTO097632 Oryza alta HOM05M002993 ORTHO05M008457 3.9e-122 441.4 558 51.3
GWHGAZTO051206 Oryza alta HOM05M002993 ORTHO05M008457 1.7e-117 426.0 306 76.8
OsR498G0917375400.01 Oryza sativa ssp. indica HOM05M002993 ORTHO05M008457 4.2e-116 421.4 311 76.2
Sspon.02G0046210-1C Saccharum spontaneum HOM05M002993 ORTHO05M008457 3.3e-113 411.8 511 53.6
Zm00007a00026286 Zea mays B104 HOM05M002993 ORTHO05M008457 2.3e-106 389.0 525 50.7
TRIDC5AG032640 Triticum dicoccoides HOM05M002993 ORTHO05M008457 3.0e-106 388.7 246 80.5
Sspon.02G0015190-2B Saccharum spontaneum HOM05M002993 ORTHO05M008457 4.3e-105 384.8 459 55.8
Sspon.02G0015190-1A Saccharum spontaneum HOM05M002993 ORTHO05M008457 1.3e-104 383.3 470 54.9
OB09G15960 Oryza brachyantha HOM05M002993 ORTHO05M008457 8.1e-104 380.6 311 65.9
CALSI_Maker00026175 Calamus simplicifolius HOM05M002993 ORTHO05M008457 2.6e-102 375.6 480 48.8
p5.00_sc00005_p0056 Elaeis guineensis HOM05M002993 ORTHO05M008457 1.2e-94 350.1 522 42.5
Sspon.02G0015190-3D Saccharum spontaneum HOM05M002993 ORTHO05M008457 2.2e-93 345.9 312 68.6
evm.TU.AsparagusV1_08.763.V1.1 Asparagus officinalis HOM05M002993 ORTHO05M002365 2.5e-89 332.4 305 58.4
Ma05_g18680 Musa acuminata HOM05M002993 ORTHO05M008457 3.3e-89 332.0 568 40.3
Asa5G01910 Allium sativum HOM05M002993 ORTHO05M008457 4.3e-89 331.6 537 40.2
Glyma.15G111500 Glycine max HOM05M002993 ORTHO05M008457 3.7e-88 328.6 476 41.2
Glyma.09G007100 Glycine max HOM05M002993 ORTHO05M008457 2.6e-86 322.4 546 38.5
HPP92_010356 Vanilla planifolia HOM05M002993 ORTHO05M008457 7.6e-86 320.9 478 42.7
AT4G04320 Arabidopsis thaliana HOM05M002993 ORTHO05M008457 1.3e-85 320.1 469 40.5
CALSI_Maker00028286 Calamus simplicifolius HOM05M002993 ORTHO05M008457 6.5e-85 317.8 368 52.4
Potri.004G005500 Populus trichocarpa HOM05M002993 ORTHO05M008457 5.7e-81 304.7 461 41.0
Potri.011G010400 Populus trichocarpa HOM05M002993 ORTHO05M008457 1.8e-79 299.7 454 39.6
ATR0686G032 Amborella trichopoda HOM05M002993 ORTHO05M008457 1.5e-78 296.6 477 40.0
Aco001009 Ananas comosus HOM05M002993 ORTHO05M008457 2.9e-77 292.4 542 38.7
SEGI_21824 Sequoiadendron giganteum HOM05M002993 ORTHO05M008457 2.0e-73 279.6 321 50.5
CDE06G1909 Ceratophyllum demersum HOM05M002993 ORTHO05M008457 9.4e-68 260.8 473 37.0
SMO367G0626 Selaginella moellendorffii HOM05M000232 ORTHO05M008457 1.4e-63 246.9 259 51.4
AagrBONN_evm.TU.Sc2ySwM_117.3852 Anthoceros agrestis HOM05M002993 ORTHO05M008457 2.4e-63 246.1 446 36.5
Mapoly0112s0027 Marchantia polymorpha HOM05M002993 ORTHO05M008457 2.6e-62 242.7 243 54.3
Pp3c1_9420 Physcomitrium patens HOM05M002993 ORTHO05M008457 2.7e-59 232.6 246 53.3
DDU506G0364 Dioscorea dumetorum HOM05M002993 ORTHO05M008457 5.2e-58 228.4 500 33.8
CBR_g2794 Chara braunii HOM05M002993 ORTHO05M008457 1.7e-53 213.4 219 53.0
PH02Gene24729 Phyllostachys edulis HOM05M002993 ORTHO05M008457 2.7e-38 162.9 133 67.7
PH02Gene01516 Phyllostachys edulis HOM05M002993 ORTHO05M008457 2.0e-30 136.7 84 79.8
GWHGAZTO072970 Oryza alta HOM05M002993 ORTHO05M013122 4.0e-18 95.9 55 85.5
Cre02.g145200 Chlamydomonas reinhardtii HOM05M002993 ORTHO05M008457 4.4e-17 92.4 142 38.0
PH02Gene21643 Phyllostachys edulis HOM05M002993 ORTHO05M021085 2.1e-11 73.6 40 80.0
Solyc02g036300.3 Solanum lycopersicum HOM05M002993 ORTHO05M008457 3.4e-09 66.2 39 71.8
CBR_g2795 Chara braunii HOM05M002993 ORTHO05M008457 4.9e-08 62.4 63 42.9


User provided reference genes

Program Settings