Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zjn_sc00014.1.g02820.1.am.mkhc Zoysia japonica ssp. nagirizaki HOM05M003183 ORTHO05M004900 1.3e-258 895.2 465 100.0
EJB05_04833 Eragrostis curvula HOM05M003183 ORTHO05M004900 5.0e-215 750.4 538 76.4
Zjn_sc00014.1.g02280.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM05M003183 ORTHO05M004900 8.8e-212 739.6 515 79.6
Ot_Chr4_g07975 Oropetium thomaeum HOM05M003183 ORTHO05M004900 1.7e-210 735.3 538 74.9
Pahal.9G110900 Panicum hallii HOM05M003183 ORTHO05M004900 4.8e-210 733.8 540 74.4
Os03g0719300 Oryza sativa ssp. japonica HOM05M003183 ORTHO05M004900 9.1e-209 729.6 538 74.2
GWHGAORA051181 Cenchrus purpureus HOM05M003183 ORTHO05M004900 1.6e-208 728.8 540 73.7
Dexi9B01G0010490 Digitaria exilis HOM05M003183 ORTHO05M004900 7.7e-208 726.5 521 76.2
GWHGAZTO026395 Oryza alta HOM05M003183 ORTHO05M004900 2.3e-207 724.9 538 73.8
Seita.9G114200 Setaria italica HOM05M003183 ORTHO05M004900 8.6e-207 723.0 540 73.7
Sevir.9G112900 Setaria viridis HOM05M003183 ORTHO05M004900 8.6e-207 723.0 540 73.7
PH02Gene25123 Phyllostachys edulis HOM05M003183 ORTHO05M004900 5.5e-206 720.3 538 73.4
PH02Gene12473 Phyllostachys edulis HOM05M003183 ORTHO05M004900 1.2e-205 719.2 538 73.6
Bradi1g10550 Brachypodium distachyon HOM05M003183 ORTHO05M004900 8.0e-205 716.5 540 73.0
Dexi9A01G0010970 Digitaria exilis HOM05M003183 ORTHO05M004900 1.4e-204 715.7 537 73.4
GWHGAZTO076307 Oryza alta HOM05M003183 ORTHO05M004900 9.8e-203 709.5 559 71.0
Misin01G102200 Miscanthus sinensis HOM05M003183 ORTHO05M004900 1.3e-202 709.1 540 72.4
V3.Lp_chr4_0G6604 Lolium perenne HOM05M003183 ORTHO05M004900 4.9e-202 707.2 538 72.1
Zm00007a00018859 Zea mays B104 HOM05M003183 ORTHO05M004900 4.9e-202 707.2 540 72.0
OB03G39180 Oryza brachyantha HOM05M003183 ORTHO05M004900 3.1e-201 704.5 565 69.2
Sobic.001G111800 Sorghum bicolor HOM05M003183 ORTHO05M004900 3.1e-201 704.5 540 71.9
GWHGAORA019442 Cenchrus purpureus HOM05M003183 ORTHO05M004900 2.7e-200 701.4 541 72.5
Zjn_sc00013.1.g02470.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM05M003183 ORTHO05M004900 2.2e-194 681.8 564 68.8
Sspon.01G0056930-2D Saccharum spontaneum HOM05M003183 ORTHO05M004900 1.4e-188 662.5 535 69.2
TraesCS4B03G0110600 Triticum aestivum HOM05M003183 ORTHO05M004900 4.7e-181 637.5 401 82.5
TRIDC4AG041220 Triticum dicoccoides HOM05M003183 ORTHO05M004900 4.7e-181 637.5 401 82.5
TRIDC4BG008040 Triticum dicoccoides HOM05M003183 ORTHO05M004900 4.7e-181 637.5 401 82.5
AET4Gv20105000 Aegilops tauschii HOM05M003183 ORTHO05M004900 4.0e-180 634.4 401 82.3
TraesCS4A03G0686000 Triticum aestivum HOM05M003183 ORTHO05M004900 4.0e-180 634.4 401 82.3
TraesCS4D03G0093400 Triticum aestivum HOM05M003183 ORTHO05M004900 4.0e-180 634.4 401 82.3
p5.00_sc00036_p0118 Elaeis guineensis HOM05M003183 ORTHO05M004900 5.8e-179 630.6 538 64.3
Spipo20G0013000 Spirodela polyrhiza HOM05M003183 ORTHO05M004900 1.3e-178 629.4 538 63.6
Horvu_MOREX_4H01G052100 Hordeum vulgare HOM05M003183 ORTHO05M004900 4.9e-178 627.5 401 81.5
TRITD4Bv1G015560 Triticum turgidum HOM05M003183 ORTHO05M004900 4.9e-178 627.5 416 79.6
MBI13_g21695_MAGBIO Magnolia biondii HOM05M003183 ORTHO05M004900 6.4e-178 627.1 566 61.0
Solyc06g072380.3 Solanum lycopersicum HOM05M003183 ORTHO05M004900 8.3e-178 626.7 540 63.0
HPP92_013151 Vanilla planifolia HOM05M003183 ORTHO05M004900 5.1e-175 617.5 537 62.8
Ma01_g06060 Musa acuminata HOM05M003183 ORTHO05M004900 1.1e-174 616.3 539 63.3
Zosma06g28390 Zostera marina HOM05M003183 ORTHO05M004900 1.5e-174 615.9 538 62.5
HPP92_013127 Vanilla planifolia HOM05M003183 ORTHO05M004900 1.9e-174 615.5 537 62.8
AT3G17770 Arabidopsis thaliana HOM05M003183 ORTHO05M004900 1.8e-172 609.0 545 61.1
Aco013403 Ananas comosus HOM05M003183 ORTHO05M004900 2.6e-171 605.1 538 63.0
ATR0598G272 Amborella trichopoda HOM05M003183 ORTHO05M004900 4.4e-171 604.4 539 61.2
Glyma.09G170600 Glycine max HOM05M003183 ORTHO05M004900 4.4e-171 604.4 539 60.9
Potri.012G041100 Populus trichocarpa HOM05M003183 ORTHO05M004900 7.6e-171 603.6 540 61.7
Ot_Chr4_gn35469 Oropetium thomaeum HOM05M003183 ORTHO05M004900 1.3e-170 602.8 539 61.8
evm.TU.AsparagusV1_03.1226.V1.1 Asparagus officinalis HOM05M003183 ORTHO05M004900 8.4e-170 600.1 538 61.7
AT1G48430 Arabidopsis thaliana HOM05M003183 ORTHO05M004900 4.2e-169 597.8 545 60.2
Glyma.07G107100 Glycine max HOM05M003183 ORTHO05M004900 1.0e-167 593.2 539 60.5
Asa1G04312 Allium sativum HOM05M003183 ORTHO05M004900 1.2e-165 586.3 509 62.3
DDU550G0184 Dioscorea dumetorum HOM05M003183 ORTHO05M004900 6.2e-165 583.9 540 61.1
Potri.015G032500 Populus trichocarpa HOM05M003183 ORTHO05M004900 3.4e-163 578.2 538 59.7
Sspon.01G0027280-2C Saccharum spontaneum HOM05M003183 ORTHO05M004900 6.4e-162 573.9 538 59.5
p5.00_sc00164_p0018 Elaeis guineensis HOM05M003183 ORTHO05M004900 1.1e-161 573.2 537 61.6
SMO230G0064 Selaginella moellendorffii HOM05M003183 ORTHO05M004900 4.2e-161 571.2 555 56.6
OsKitaake03g317200 Oryza sativa Kitaake HOM05M003183 ORTHO05M004900 1.4e-153 546.2 446 69.1
Seita.9G114400 Setaria italica HOM05M003183 ORTHO05M004900 5.6e-150 534.3 400 69.2
Pahal.9G111000 Panicum hallii HOM05M003183 ORTHO05M004900 1.3e-149 533.1 400 70.0
CALSI_Maker00001410 Calamus simplicifolius HOM05M003183 ORTHO05M004900 2.1e-149 532.3 569 56.4
GWHGAORA019408 Cenchrus purpureus HOM05M003183 ORTHO05M004900 2.1e-149 532.3 402 69.4
Sevir.9G113000 Setaria viridis HOM05M003183 ORTHO05M004900 2.1e-149 532.3 400 69.0
Mapoly0125s0006 Marchantia polymorpha HOM05M003183 ORTHO05M004900 3.1e-148 528.5 538 54.1
AagrBONN_evm.TU.Sc2ySwM_228.5556 Anthoceros agrestis HOM05M003183 ORTHO05M004900 4.0e-148 528.1 554 53.8
Misin01G102300 Miscanthus sinensis HOM05M003183 ORTHO05M004900 9.0e-148 526.9 399 68.9
GWHGAORA051182 Cenchrus purpureus HOM05M003183 ORTHO05M004900 2.6e-147 525.4 400 68.5
Dexi9B01G0010500 Digitaria exilis HOM05M003183 ORTHO05M004900 5.5e-145 517.7 400 67.8
Pp3c10_19150 Physcomitrium patens HOM05M003183 ORTHO05M004900 1.6e-144 516.2 555 52.3
Sobic.001G112000 Sorghum bicolor HOM05M003183 ORTHO05M004900 1.8e-143 512.7 398 67.8
Pp3c4_4070 Physcomitrium patens HOM05M003183 ORTHO05M004900 2.9e-138 495.4 530 51.7
CALSI_Maker00010592 Calamus simplicifolius HOM05M003183 ORTHO05M004900 8.2e-133 477.2 517 55.1
EJB05_04834 Eragrostis curvula HOM05M003183 ORTHO05M004900 8.2e-133 477.2 419 64.0
Aco013448 Ananas comosus HOM05M003183 ORTHO05M004900 1.1e-132 476.9 358 70.9
Pp3c3_29160 Physcomitrium patens HOM05M003183 ORTHO05M004900 3.2e-129 465.3 458 55.5
Misin02G089800 Miscanthus sinensis HOM05M003183 ORTHO05M004900 5.5e-129 464.5 417 62.1
GWHGAORA019441 Cenchrus purpureus HOM05M003183 ORTHO05M004900 3.3e-126 455.3 400 63.0
CDE06G0014 Ceratophyllum demersum HOM05M003183 ORTHO05M004900 3.2e-121 438.7 480 56.0
PH02Gene12000 Phyllostachys edulis HOM05M003183 ORTHO05M007286 1.4e-119 433.3 290 80.0
Sspon.01G0056930-1C Saccharum spontaneum HOM05M003183 ORTHO05M004900 1.7e-117 426.4 438 59.4
CBR_g4012 Chara braunii HOM05M003183 ORTHO05M004900 9.1e-116 420.6 542 45.0
OsR498G0306943600.01 Oryza sativa ssp. indica HOM05M003183 ORTHO05M004900 1.2e-112 410.2 260 81.9
Sspon.01G0027280-1A Saccharum spontaneum HOM05M003183 ORTHO05M004900 1.0e-95 354.0 339 58.1
MCO02G001 Micromonas commoda HOM05M003183 ORTHO05M004900 6.1e-88 328.2 536 42.2
Misin02G089600 Miscanthus sinensis HOM05M003183 ORTHO05M004900 4.0e-79 298.9 278 62.6
Dexi9A01G0010980 Digitaria exilis HOM05M003183 ORTHO05M004900 1.5e-73 280.4 663 33.2
Cre13.g607450 Chlamydomonas reinhardtii HOM05M003183 ORTHO05M004900 5.2e-71 271.9 617 35.3
SEGI_25290 Sequoiadendron giganteum HOM05M003183 ORTHO05M004900 2.9e-69 266.2 155 81.3
Misin19G000100 Miscanthus sinensis HOM05M003183 ORTHO05M004900 1.2e-67 260.8 272 57.0
PH02Gene23170 Phyllostachys edulis HOM05M003183 ORTHO05M210071 5.1e-66 255.4 184 76.6
Zm00007a00029258 Zea mays B104 HOM05M003183 ORTHO05M009690 1.2e-64 250.8 616 33.1
Zm00007a00000261 Zea mays B104 HOM05M003183 ORTHO05M009690 3.6e-64 249.2 693 31.5
PH02Gene11817 Phyllostachys edulis HOM05M003183 ORTHO05M005388 5.2e-63 245.4 198 70.2
PRCOL_00004885 Prasinoderma coloniale HOM05M003183 ORTHO05M004900 2.2e-61 240.0 573 33.5
Misin04G139200 Miscanthus sinensis HOM05M003183 ORTHO05M004900 1.9e-57 226.9 139 82.7
SEGI_07046 Sequoiadendron giganteum HOM05M003183 ORTHO05M004900 8.7e-50 201.4 196 55.1
Misin02G089500 Miscanthus sinensis HOM05M003183 ORTHO05M021172 5.3e-47 192.2 103 92.2
Glyma.15G201250 Glycine max HOM05M003183 ORTHO05M004900 1.2e-46 191.0 136 68.4
Zjn_sc00013.1.g02460.1.sm.mk Zoysia japonica ssp. nagirizaki HOM05M003183 ORTHO05M004900 5.4e-44 182.2 231 48.1
Zm00007a00010210 Zea mays B104 HOM05M003183 ORTHO05M009690 8.1e-40 168.3 558 29.0
evm.TU.AsparagusV1_07.1183.V1.1 Asparagus officinalis HOM05M003183 ORTHO05M004900 1.5e-38 164.1 171 53.8
MisinT332100 Miscanthus sinensis HOM05M003183 ORTHO05M021896 3.4e-38 162.9 103 78.6
PH02Gene41040 Phyllostachys edulis HOM05M004208 ORTHO05M005301 1.1e-28 131.3 72 90.3
SEGI_32565 Sequoiadendron giganteum HOM05M003183 ORTHO05M004900 2.8e-24 116.7 181 40.9
PH02Gene04378 Phyllostachys edulis HOM05M003183 ORTHO05M017884 1.8e-23 114.0 131 55.7
Zjn_sc00014.1.g02800.1.am.mkhc Zoysia japonica ssp. nagirizaki HOM05M003183 ORTHO05M017884 4.5e-22 109.4 69 88.4
TRITD4Av1G191140 Triticum turgidum HOM05M003183 ORTHO05M004900 1.3e-21 107.8 68 83.8
PH02Gene31841 Phyllostachys edulis HOM05M003183 ORTHO05M017884 6.5e-21 105.5 109 62.4
Potri.011G011650 Populus trichocarpa HOM05M003183 ORTHO05M004900 1.1e-17 94.7 50 86.0
PH02Gene51237 Phyllostachys edulis HOM05M003183 ORTHO05M021172 1.5e-17 94.4 48 93.8
PH02Gene04379 Phyllostachys edulis HOM05M003183 ORTHO05M017884 5.7e-17 92.4 100 61.0
Zm00007a00010101 Zea mays B104 HOM05M003183 ORTHO05M004916 1.6e-16 90.9 65 72.3
CALSI_Maker00049150 Calamus simplicifolius HOM05M003183 ORTHO05M021172 2.2e-13 80.5 48 79.2
Zjn_sc00014.1.g02780.1.sm.mk Zoysia japonica ssp. nagirizaki HOM05M003183 ORTHO05M021896 1.4e-12 77.8 54 75.9
Misin19G144000 Miscanthus sinensis HOM05M003183 ORTHO05M141365 3.3e-09 66.6 37 89.2
Zm00007a00028717 Zea mays B104 HOM05M003183 ORTHO05M017884 1.4e-07 61.2 37 83.8
PH02Gene41475 Phyllostachys edulis HOM05M003183 ORTHO05M209477 1.8e-07 60.8 37 81.1
Zjn_sc00014.1.g02250.1.sm.mk Zoysia japonica ssp. nagirizaki HOM05M000099 ORTHO05M000424 5.3e-07 59.3 27 100.0
Misin04G024500 Miscanthus sinensis HOM05M003183 ORTHO05M021896 6.9e-07 58.9 43 69.8
MisinT007600 Miscanthus sinensis HOM05M003183 ORTHO05M021896 6.9e-07 58.9 77 49.4
Glyma.18G156700 Glycine max HOM05M003183 ORTHO05M116587 1.2e-06 58.2 38 73.7


User provided reference genes

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