Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zjn_sc00014.1.g02800.1.am.mkhc Zoysia japonica ssp. nagirizaki HOM05M003183 ORTHO05M017884 1.1e-57 225.7 124 100.0
Zjn_sc00014.1.g02280.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM05M003183 ORTHO05M004900 2.2e-45 184.9 122 86.1
Zjn_sc00013.1.g02470.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM05M003183 ORTHO05M004900 7.2e-44 179.9 115 87.0
Pahal.9G110900 Panicum hallii HOM05M003183 ORTHO05M004900 4.7e-43 177.2 113 87.6
EJB05_04833 Eragrostis curvula HOM05M003183 ORTHO05M004900 6.1e-43 176.8 113 86.7
Misin02G089600 Miscanthus sinensis HOM05M003183 ORTHO05M004900 1.4e-42 175.6 113 86.7
Sspon.01G0056930-1C Saccharum spontaneum HOM05M003183 ORTHO05M004900 1.4e-42 175.6 113 86.7
GWHGAORA051181 Cenchrus purpureus HOM05M003183 ORTHO05M004900 1.8e-42 175.3 113 86.7
Sobic.001G111800 Sorghum bicolor HOM05M003183 ORTHO05M004900 1.8e-42 175.3 113 85.8
Seita.9G114200 Setaria italica HOM05M003183 ORTHO05M004900 2.3e-42 174.9 113 85.8
Sevir.9G112900 Setaria viridis HOM05M003183 ORTHO05M004900 2.3e-42 174.9 113 85.8
Ot_Chr4_g07975 Oropetium thomaeum HOM05M003183 ORTHO05M004900 3.0e-42 174.5 109 88.1
Zm00007a00018859 Zea mays B104 HOM05M003183 ORTHO05M004900 3.9e-42 174.1 113 85.0
GWHGAORA019442 Cenchrus purpureus HOM05M003183 ORTHO05M004900 6.7e-42 173.3 112 85.7
Misin01G102200 Miscanthus sinensis HOM05M003183 ORTHO05M004900 8.8e-42 172.9 113 85.0
Bradi1g10550 Brachypodium distachyon HOM05M003183 ORTHO05M004900 2.0e-41 171.8 113 84.1
Dexi9B01G0010490 Digitaria exilis HOM05M003183 ORTHO05M004900 3.3e-41 171.0 117 82.1
V3.Lp_chr4_0G6604 Lolium perenne HOM05M003183 ORTHO05M004900 9.7e-41 169.5 113 83.2
PH02Gene12473 Phyllostachys edulis HOM05M003183 ORTHO05M004900 1.3e-40 169.1 113 83.2
Dexi9A01G0010970 Digitaria exilis HOM05M003183 ORTHO05M004900 3.7e-40 167.5 109 85.3
TRIDC4AG041220 Triticum dicoccoides HOM05M003183 ORTHO05M004900 6.3e-40 166.8 113 82.3
GWHGAZTO026395 Oryza alta HOM05M003183 ORTHO05M004900 8.2e-40 166.4 111 84.7
TraesCS4B03G0110600 Triticum aestivum HOM05M003183 ORTHO05M004900 8.2e-40 166.4 113 81.4
TRIDC4BG008040 Triticum dicoccoides HOM05M003183 ORTHO05M004900 8.2e-40 166.4 113 81.4
TRITD4Bv1G015560 Triticum turgidum HOM05M003183 ORTHO05M004900 8.2e-40 166.4 113 81.4
OsKitaake03g317200 Oryza sativa Kitaake HOM05M003183 ORTHO05M004900 1.8e-39 165.2 113 82.3
Os03g0719300 Oryza sativa ssp. japonica HOM05M003183 ORTHO05M004900 1.8e-39 165.2 113 82.3
Horvu_MOREX_4H01G052100 Hordeum vulgare HOM05M003183 ORTHO05M004900 2.4e-39 164.9 113 81.4
OB03G39180 Oryza brachyantha HOM05M003183 ORTHO05M004900 2.4e-39 164.9 113 80.5
TraesCS4A03G0686000 Triticum aestivum HOM05M003183 ORTHO05M004900 3.1e-39 164.5 113 81.4
TRITD4Av1G191140 Triticum turgidum HOM05M003183 ORTHO05M004900 3.1e-39 164.5 113 81.4
AET4Gv20105000 Aegilops tauschii HOM05M003183 ORTHO05M004900 4.1e-39 164.1 113 80.5
PH02Gene25123 Phyllostachys edulis HOM05M003183 ORTHO05M004900 2.6e-38 161.4 113 79.6
TraesCS4D03G0093400 Triticum aestivum HOM05M003183 ORTHO05M004900 2.2e-37 158.3 117 77.8
GWHGAZTO076307 Oryza alta HOM05M003183 ORTHO05M004900 5.0e-37 157.1 119 74.8
Aco013403 Ananas comosus HOM05M003183 ORTHO05M004900 3.2e-36 154.5 104 78.8
Asa1G04312 Allium sativum HOM05M003183 ORTHO05M004900 4.7e-35 150.6 113 71.7
evm.TU.AsparagusV1_03.1226.V1.1 Asparagus officinalis HOM05M003183 ORTHO05M004900 6.1e-35 150.2 113 70.8
MBI13_g21695_MAGBIO Magnolia biondii HOM05M003183 ORTHO05M004900 1.8e-34 148.7 110 72.7
p5.00_sc00164_p0018 Elaeis guineensis HOM05M003183 ORTHO05M004900 3.0e-34 147.9 112 73.2
Potri.012G041100 Populus trichocarpa HOM05M003183 ORTHO05M004900 4.0e-34 147.5 108 73.1
Potri.015G032500 Populus trichocarpa HOM05M003183 ORTHO05M004900 8.8e-34 146.4 108 72.2
Solyc06g072380.3 Solanum lycopersicum HOM05M003183 ORTHO05M004900 2.0e-33 145.2 106 74.5
p5.00_sc00036_p0118 Elaeis guineensis HOM05M003183 ORTHO05M004900 4.4e-33 144.1 113 71.7
Sspon.01G0056930-2D Saccharum spontaneum HOM05M003183 ORTHO05M004900 5.7e-33 143.7 94 86.2
CDE06G0014 Ceratophyllum demersum HOM05M003183 ORTHO05M004900 9.7e-33 142.9 108 70.4
DDU550G0184 Dioscorea dumetorum HOM05M003183 ORTHO05M004900 2.8e-32 141.4 109 68.8
ATR0598G272 Amborella trichopoda HOM05M003183 ORTHO05M004900 4.8e-32 140.6 107 70.1
Ma01_g06060 Musa acuminata HOM05M003183 ORTHO05M004900 6.3e-32 140.2 112 69.6
Sspon.01G0027280-2C Saccharum spontaneum HOM05M003183 ORTHO05M004900 8.3e-32 139.8 105 72.4
Sobic.001G112000 Sorghum bicolor HOM05M003183 ORTHO05M004900 8.3e-32 139.8 105 72.4
Pahal.9G111000 Panicum hallii HOM05M003183 ORTHO05M004900 1.8e-31 138.7 113 68.1
Misin01G102300 Miscanthus sinensis HOM05M003183 ORTHO05M004900 4.1e-31 137.5 105 71.4
Ot_Chr4_gn35469 Oropetium thomaeum HOM05M003183 ORTHO05M004900 9.1e-31 136.3 106 70.8
Glyma.09G170600 Glycine max HOM05M003183 ORTHO05M004900 1.6e-30 135.6 108 68.5
HPP92_013127 Vanilla planifolia HOM05M003183 ORTHO05M004900 1.6e-30 135.6 113 65.5
HPP92_013151 Vanilla planifolia HOM05M003183 ORTHO05M004900 1.6e-30 135.6 113 65.5
AT3G17770 Arabidopsis thaliana HOM05M003183 ORTHO05M004900 2.0e-30 135.2 110 65.5
CALSI_Maker00010592 Calamus simplicifolius HOM05M003183 ORTHO05M004900 3.5e-30 134.4 135 60.7
Misin02G089800 Miscanthus sinensis HOM05M003183 ORTHO05M004900 3.5e-30 134.4 105 70.5
Seita.9G114400 Setaria italica HOM05M003183 ORTHO05M004900 4.5e-30 134.0 107 68.2
Sevir.9G113000 Setaria viridis HOM05M003183 ORTHO05M004900 4.5e-30 134.0 107 68.2
EJB05_04834 Eragrostis curvula HOM05M003183 ORTHO05M004900 5.9e-30 133.7 112 67.9
Spipo20G0013000 Spirodela polyrhiza HOM05M003183 ORTHO05M004900 7.7e-30 133.3 107 68.2
Zosma06g28390 Zostera marina HOM05M003183 ORTHO05M004900 1.3e-29 132.5 109 67.9
GWHGAORA019441 Cenchrus purpureus HOM05M003183 ORTHO05M004900 2.2e-29 131.7 105 68.6
Glyma.07G107100 Glycine max HOM05M003183 ORTHO05M004900 5.5e-28 127.1 108 64.8
SMO230G0064 Selaginella moellendorffii HOM05M003183 ORTHO05M004900 2.1e-27 125.2 103 65.0
PH02Gene04378 Phyllostachys edulis HOM05M003183 ORTHO05M017884 3.6e-27 124.4 93 77.4
PH02Gene31841 Phyllostachys edulis HOM05M003183 ORTHO05M017884 8.0e-27 123.2 94 76.6
PH02Gene04379 Phyllostachys edulis HOM05M003183 ORTHO05M017884 1.5e-25 119.0 93 75.3
AagrBONN_evm.TU.Sc2ySwM_228.5556 Anthoceros agrestis HOM05M003183 ORTHO05M004900 9.8e-25 116.3 107 60.7
GWHGAORA019408 Cenchrus purpureus HOM05M003183 ORTHO05M004900 4.8e-24 114.0 94 69.1
Pp3c4_4070 Physcomitrium patens HOM05M003183 ORTHO05M004900 2.4e-23 111.7 103 60.2
Pp3c10_19150 Physcomitrium patens HOM05M003183 ORTHO05M004900 4.1e-23 110.9 105 58.1
Zjn_sc00014.1.g02820.1.am.mkhc Zoysia japonica ssp. nagirizaki HOM05M003183 ORTHO05M004900 1.6e-22 109.0 69 88.4
Mapoly0125s0006 Marchantia polymorpha HOM05M003183 ORTHO05M004900 1.1e-20 102.8 108 53.7
GWHGAORA051182 Cenchrus purpureus HOM05M003183 ORTHO05M004900 5.5e-20 100.5 83 67.5
CBR_g4012 Chara braunii HOM05M003183 ORTHO05M004900 4.4e-17 90.9 107 49.5
CALSI_Maker00001410 Calamus simplicifolius HOM05M003183 ORTHO05M004900 5.7e-17 90.5 63 76.2
SEGI_32565 Sequoiadendron giganteum HOM05M003183 ORTHO05M004900 9.8e-17 89.7 68 75.0
MCO02G001 Micromonas commoda HOM05M003183 ORTHO05M004900 1.1e-15 86.3 99 47.5
Zm00007a00028717 Zea mays B104 HOM05M003183 ORTHO05M017884 3.2e-15 84.7 91 58.2
Dexi9A01G0010980 Digitaria exilis HOM05M003183 ORTHO05M004900 1.2e-14 82.8 71 63.4
Dexi9B01G0010500 Digitaria exilis HOM05M003183 ORTHO05M004900 4.5e-14 80.9 71 62.0
AT1G48430 Arabidopsis thaliana HOM05M003183 ORTHO05M004900 5.9e-14 80.5 75 57.3
Cre13.g607450 Chlamydomonas reinhardtii HOM05M003183 ORTHO05M004900 1.7e-13 79.0 102 47.1
Zjn_sc00013.1.g02460.1.sm.mk Zoysia japonica ssp. nagirizaki HOM05M003183 ORTHO05M004900 6.6e-13 77.0 57 73.7
PRCOL_00004885 Prasinoderma coloniale HOM05M003183 ORTHO05M004900 8.9e-10 66.6 103 46.6
evm.TU.AsparagusV1_05.900.V1.1 Asparagus officinalis HOM05M003183 ORTHO05M017884 1.7e-08 62.4 45 64.4
PH02Gene41475 Phyllostachys edulis HOM05M003183 ORTHO05M209477 1.4e-07 59.3 36 83.3


User provided reference genes

Program Settings