Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zjn_sc00007.1.g08270.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM05M000972 ORTHO05M002154 4.7e-112 407.1 209 100.0
Sspon.04G0023440-1B Saccharum spontaneum HOM05M000972 ORTHO05M002154 8.0e-88 326.6 267 69.7
Sobic.004G274700 Sorghum bicolor HOM05M000972 ORTHO05M002154 2.6e-86 321.6 266 69.2
Zjn_sc00022.1.g04730.1.am.mkhc Zoysia japonica ssp. nagirizaki HOM05M000972 ORTHO05M002154 4.4e-86 320.9 266 69.5
Sspon.04G0023440-2C Saccharum spontaneum HOM05M000972 ORTHO05M002154 1.3e-85 319.3 266 68.8
Sspon.04G0023440-3D Saccharum spontaneum HOM05M000972 ORTHO05M002154 1.3e-85 319.3 266 68.8
Dexi1B01G0022900 Digitaria exilis HOM05M000972 ORTHO05M002154 1.7e-85 318.9 267 68.5
EJB05_19593 Eragrostis curvula HOM05M000972 ORTHO05M002154 3.7e-85 317.8 266 68.8
Pahal.1G356000 Panicum hallii HOM05M000972 ORTHO05M002154 4.9e-85 317.4 267 67.8
Dexi1A01G0023840 Digitaria exilis HOM05M000972 ORTHO05M002154 6.4e-85 317.0 267 68.2
Sevir.1G286000 Setaria viridis HOM05M000972 ORTHO05M002154 5.4e-84 313.9 265 67.5
Misin07G451600 Miscanthus sinensis HOM05M000972 ORTHO05M002154 2.0e-83 312.0 266 67.3
Seita.1G280500 Setaria italica HOM05M000972 ORTHO05M002154 2.0e-83 312.0 265 67.2
GWHGAORA024879 Cenchrus purpureus HOM05M000972 ORTHO05M002154 4.6e-83 310.8 264 65.9
Ot_Chr1_g19375 Oropetium thomaeum HOM05M000972 ORTHO05M002154 1.0e-82 309.7 266 67.3
PH02Gene03811 Phyllostachys edulis HOM05M000972 ORTHO05M002154 6.6e-82 307.0 267 65.9
Zm00007a00022796 Zea mays B104 HOM05M000972 ORTHO05M002154 4.3e-81 304.3 277 63.9
OB02G35850 Oryza brachyantha HOM05M000972 ORTHO05M002154 4.9e-77 290.8 267 63.7
OsKitaake02g294400 Oryza sativa Kitaake HOM05M000972 ORTHO05M002154 1.1e-76 289.7 267 62.9
Os02g0693500 Oryza sativa ssp. japonica HOM05M000972 ORTHO05M002154 1.1e-76 289.7 267 62.9
OsR498G0204580600.01 Oryza sativa ssp. indica HOM05M000972 ORTHO05M002154 2.4e-76 288.5 267 62.5
GWHGAZTO071857 Oryza alta HOM05M000972 ORTHO05M002154 3.2e-76 288.1 267 62.5
PH02Gene46303 Phyllostachys edulis HOM05M000972 ORTHO05M002154 1.2e-75 286.2 266 62.0
GWHGASIY011113 Secale cereale HOM05M000972 ORTHO05M002154 2.0e-75 285.4 266 61.7
Bradi5g20030 Brachypodium distachyon HOM05M000972 ORTHO05M002154 1.0e-74 283.1 266 60.9
Horvu_MOREX_2H01G653800 Hordeum vulgare HOM05M000972 ORTHO05M002154 1.3e-74 282.7 266 60.9
TraesCS2B03G1184800 Triticum aestivum HOM05M000972 ORTHO05M002154 1.7e-74 282.3 266 60.9
Zm00001eb072290 Zea mays B73 HOM05M000972 ORTHO05M002154 1.7e-74 282.3 266 60.5
Zm00007a00016099 Zea mays B104 HOM05M000972 ORTHO05M002154 1.7e-74 282.3 266 60.5
Ot_Chr6_g01546 Oropetium thomaeum HOM05M000972 ORTHO05M002154 3.0e-74 281.6 266 60.9
AET2Gv20988400 Aegilops tauschii HOM05M000972 ORTHO05M002154 3.9e-74 281.2 266 60.9
TraesCS2D03G1000700 Triticum aestivum HOM05M000972 ORTHO05M002154 3.9e-74 281.2 266 60.9
Pahal.7G273400 Panicum hallii HOM05M000972 ORTHO05M002154 5.0e-74 280.8 266 60.9
TraesCS2A03G1060400 Triticum aestivum HOM05M000972 ORTHO05M002154 6.6e-74 280.4 266 60.5
OsKitaake04g244300 Oryza sativa Kitaake HOM05M000972 ORTHO05M002154 8.6e-74 280.0 266 60.2
OsR498G0409196800.01 Oryza sativa ssp. indica HOM05M000972 ORTHO05M002154 8.6e-74 280.0 266 60.2
Os04g0592600 Oryza sativa ssp. japonica HOM05M000972 ORTHO05M002154 8.6e-74 280.0 266 60.2
Seita.7G219500 Setaria italica HOM05M000972 ORTHO05M002154 8.6e-74 280.0 266 60.5
Zm00007a00017569 Zea mays B104 HOM05M000972 ORTHO05M002154 8.6e-74 280.0 266 60.2
Sevir.7G231200 Setaria viridis HOM05M000972 ORTHO05M002154 1.1e-73 279.6 266 60.5
Sspon.07G0015700-1A Saccharum spontaneum HOM05M000972 ORTHO05M002154 1.5e-73 279.3 266 60.2
Sspon.07G0015700-2B Saccharum spontaneum HOM05M000972 ORTHO05M002154 1.5e-73 279.3 266 60.2
Sspon.07G0015700-3C Saccharum spontaneum HOM05M000972 ORTHO05M002154 1.5e-73 279.3 266 60.2
Zm00001eb429920 Zea mays B73 HOM05M000972 ORTHO05M002154 1.5e-73 279.3 266 60.2
GWHGAORA021627 Cenchrus purpureus HOM05M000972 ORTHO05M002154 1.9e-73 278.9 266 60.2
OB04G30500 Oryza brachyantha HOM05M000972 ORTHO05M002154 2.5e-73 278.5 266 59.8
GWHGAORA021641 Cenchrus purpureus HOM05M000972 ORTHO05M002154 3.3e-73 278.1 266 60.2
Misin11G201100 Miscanthus sinensis HOM05M000972 ORTHO05M002154 3.3e-73 278.1 266 59.8
Sobic.006G198500 Sorghum bicolor HOM05M000972 ORTHO05M002154 4.3e-73 277.7 266 59.8
Zm00001eb251300 Zea mays B73 HOM05M000972 ORTHO05M002154 9.5e-73 276.6 259 63.3
GWHGAORA062834 Cenchrus purpureus HOM05M000972 ORTHO05M002154 1.6e-72 275.8 266 59.4
EJB05_39493 Eragrostis curvula HOM05M000972 ORTHO05M002154 1.6e-72 275.8 261 60.5
GWHGAZTO080877 Oryza alta HOM05M000972 ORTHO05M002154 6.2e-72 273.9 266 59.0
Misin08G246900 Miscanthus sinensis HOM05M000972 ORTHO05M002154 1.4e-71 272.7 266 61.7
Horvu_MOREX_2H01G323900 Hordeum vulgare HOM05M000972 ORTHO05M002154 5.2e-71 270.8 266 59.0
Horvu_MOREX_7H01G307800 Hordeum vulgare HOM05M000972 ORTHO05M002154 3.4e-70 268.1 245 62.0
Zjn_sc00023.1.g01770.1.am.mkhc Zoysia japonica ssp. nagirizaki HOM05M000972 ORTHO05M002154 2.2e-69 265.4 209 70.3
Zjn_sc00004.1.g08780.1.am.mkhc Zoysia japonica ssp. nagirizaki HOM05M000972 ORTHO05M002154 1.4e-68 262.7 209 68.9
Dexi5B01G0040090 Digitaria exilis HOM05M000972 ORTHO05M002154 1.9e-68 262.3 162 86.4
Misin12G216300 Miscanthus sinensis HOM05M000972 ORTHO05M002154 3.3e-65 251.5 240 61.2
TRIDC2BG068150 Triticum dicoccoides HOM05M000972 ORTHO05M002154 1.6e-64 249.2 245 58.4
Sspon.07G0015700-4D Saccharum spontaneum HOM05M000972 ORTHO05M002154 2.8e-64 248.4 266 56.0
TRIDC2AG063960 Triticum dicoccoides HOM05M000972 ORTHO05M002154 8.1e-64 246.9 244 58.2
Aco012947 Ananas comosus HOM05M000972 ORTHO05M002154 5.8e-62 240.7 257 54.1
Dexi7A01G0017320 Digitaria exilis HOM05M000972 ORTHO05M002154 1.3e-61 239.6 229 59.8
Dexi7B01G0017980 Digitaria exilis HOM05M000972 ORTHO05M002154 1.3e-61 239.6 229 59.8
TRITD2Bv1G217800 Triticum turgidum HOM05M000972 ORTHO05M006735 1.3e-61 239.6 155 80.6
TRITD2Av1G255400 Triticum turgidum HOM05M000972 ORTHO05M006735 1.7e-61 239.2 155 80.6
evm.TU.AsparagusV1_10.113.V1.1 Asparagus officinalis HOM05M000972 ORTHO05M002154 1.6e-59 232.6 256 54.3
p5.00_sc00002_p0078 Elaeis guineensis HOM05M000972 ORTHO05M002154 3.5e-59 231.5 249 54.6
p5.00_sc00696_p0002 Elaeis guineensis HOM05M000972 ORTHO05M002154 4.6e-59 231.1 244 55.3
Potri.001G140200 Populus trichocarpa HOM05M000972 ORTHO05M002154 1.3e-58 229.6 250 53.6
Asa6G02631 Allium sativum HOM05M000972 ORTHO05M002154 1.7e-58 229.2 253 54.2
Spipo11G0009900 Spirodela polyrhiza HOM05M000972 ORTHO05M002154 1.7e-58 229.2 246 55.7
Glyma.01G016800 Glycine max HOM05M000972 ORTHO05M002154 3.0e-58 228.4 255 52.2
Ma04_g19510 Musa acuminata HOM05M000972 ORTHO05M002154 3.9e-58 228.0 259 52.9
Glyma.09G206000 Glycine max HOM05M000972 ORTHO05M002154 6.6e-58 227.3 250 52.8
HPP92_014660 Vanilla planifolia HOM05M000972 ORTHO05M002154 8.7e-58 226.9 248 54.4
ATR0665G380 Amborella trichopoda HOM05M000972 ORTHO05M002154 3.3e-57 224.9 244 54.1
Ma04_g33900 Musa acuminata HOM05M000972 ORTHO05M002154 4.3e-57 224.6 248 54.4
Potri.003G094000 Populus trichocarpa HOM05M000972 ORTHO05M002154 1.2e-56 223.0 250 52.4
Solyc08g076670.3 Solanum lycopersicum HOM05M000972 ORTHO05M002154 2.1e-56 222.2 250 51.6
AT4G17790 Arabidopsis thaliana HOM05M000972 ORTHO05M002154 5.8e-54 214.2 243 51.4
CALSI_Maker00034794 Calamus simplicifolius HOM05M000972 ORTHO05M002154 1.7e-53 212.6 222 55.4
Zosma06g01460 Zostera marina HOM05M000972 ORTHO05M002154 8.4e-53 210.3 242 50.4
Ma04_g12280 Musa acuminata HOM05M000972 ORTHO05M002154 4.2e-52 208.0 242 50.0
GWHGAZTO031193 Oryza alta HOM05M000972 ORTHO05M002154 9.3e-52 206.8 206 57.3
Ma09_g23780 Musa acuminata HOM05M000972 ORTHO05M002154 5.1e-50 201.1 254 47.6
DDU613G0407 Dioscorea dumetorum HOM05M000972 ORTHO05M002154 9.6e-49 196.8 225 52.9
MBI04_g20347_MAGBIO Magnolia biondii HOM05M000972 ORTHO05M002154 3.6e-48 194.9 253 48.6
Horvu_MOREX_2H01G341600 Hordeum vulgare HOM05M000972 ORTHO05M002154 8.1e-48 193.7 210 54.3
SEGI_12492 Sequoiadendron giganteum HOM05M000972 ORTHO05M002154 3.4e-46 188.3 252 41.7
Glyma.20G175400 Glycine max HOM05M000972 ORTHO05M002154 1.9e-44 182.6 248 43.5
Glyma.10G216600 Glycine max HOM05M000972 ORTHO05M002154 3.2e-44 181.8 248 44.0
Aco028764 Ananas comosus HOM05M000972 ORTHO05M002154 7.1e-44 180.6 256 43.4
p5.00_sc00001_p0843 Elaeis guineensis HOM05M000972 ORTHO05M002154 7.1e-44 180.6 255 42.7
CDE06G1585 Ceratophyllum demersum HOM05M000972 ORTHO05M002154 1.6e-43 179.5 180 60.0
Potri.013G113000 Populus trichocarpa HOM05M000972 ORTHO05M002154 2.1e-43 179.1 246 43.9
Ma06_g07870 Musa acuminata HOM05M000972 ORTHO05M002154 2.7e-43 178.7 253 42.3
p5.00_sc00031_p0139 Elaeis guineensis HOM05M000972 ORTHO05M002154 3.5e-43 178.3 255 42.4
Solyc06g065400.3 Solanum lycopersicum HOM05M000972 ORTHO05M002154 4.6e-43 177.9 252 41.7
Ma06_g05700 Musa acuminata HOM05M000972 ORTHO05M002154 7.9e-43 177.2 253 42.3
Ma07_g11650 Musa acuminata HOM05M000972 ORTHO05M002154 7.9e-43 177.2 255 41.2
Potri.019G083500 Populus trichocarpa HOM05M000972 ORTHO05M002154 1.0e-42 176.8 249 42.6
SEGI_15843 Sequoiadendron giganteum HOM05M000972 ORTHO05M002154 1.8e-42 176.0 152 61.2
ATR0584G036 Amborella trichopoda HOM05M000972 ORTHO05M002154 8.7e-42 173.7 190 54.7
DDU272G0262 Dioscorea dumetorum HOM05M000972 ORTHO05M002154 4.3e-41 171.4 251 40.2
Asa7G05466 Allium sativum HOM05M000972 ORTHO05M002154 5.6e-41 171.0 251 41.0
AT4G09580 Arabidopsis thaliana HOM05M000972 ORTHO05M002154 9.6e-41 170.2 248 41.5
HPP92_019220 Vanilla planifolia HOM05M000972 ORTHO05M002154 1.3e-40 169.9 245 41.6
GWHGAORA060317 Cenchrus purpureus HOM05M000972 ORTHO05M002154 1.6e-40 169.5 267 44.9
CALSI_Maker00018117 Calamus simplicifolius HOM05M000972 ORTHO05M002154 3.7e-40 168.3 159 56.6
Spipo20G0017900 Spirodela polyrhiza HOM05M000972 ORTHO05M002154 4.8e-40 167.9 252 37.3
Solyc11g018620.3 Solanum lycopersicum HOM05M000972 ORTHO05M002154 6.2e-40 167.5 248 41.5
CDE08G0639 Ceratophyllum demersum HOM05M000972 ORTHO05M002154 2.4e-39 165.6 245 41.2
AT1G71940 Arabidopsis thaliana HOM05M000972 ORTHO05M002154 3.1e-39 165.2 153 56.9
Pp3c16_5420 Physcomitrium patens HOM05M000972 ORTHO05M002154 3.1e-39 165.2 245 39.6
SMO118G0527 Selaginella moellendorffii HOM05M000972 ORTHO05M002154 4.0e-39 164.9 253 40.7
Zosma01g19460 Zostera marina HOM05M000972 ORTHO05M002154 5.3e-39 164.5 253 39.5
CDE02G2095 Ceratophyllum demersum HOM05M000972 ORTHO05M002154 6.9e-39 164.1 247 41.3
Pp3c5_9530 Physcomitrium patens HOM05M000972 ORTHO05M002154 9.0e-39 163.7 244 38.9
evm.TU.AsparagusV1_03.1443.V1.1 Asparagus officinalis HOM05M000972 ORTHO05M002154 2.0e-38 162.5 225 42.7
Ot_Chr4_g08069 Oropetium thomaeum HOM05M000972 ORTHO05M002154 7.6e-38 160.6 244 40.6
Mapoly0001s0510 Marchantia polymorpha HOM05M000972 ORTHO05M002154 1.3e-37 159.8 242 39.7
Pahal.9G122400 Panicum hallii HOM05M000972 ORTHO05M002154 2.2e-37 159.1 244 40.6
Sobic.001G122500 Sorghum bicolor HOM05M000972 ORTHO05M002154 2.9e-37 158.7 244 40.2
Horvu_MOREX_4H01G040600 Hordeum vulgare HOM05M000972 ORTHO05M002154 3.8e-37 158.3 244 40.2
GWHGASIY018321 Secale cereale HOM05M000972 ORTHO05M002154 3.8e-37 158.3 244 40.2
TraesCS4A03G0705100 Triticum aestivum HOM05M000972 ORTHO05M002154 3.8e-37 158.3 244 40.2
TRIDC4AG042400 Triticum dicoccoides HOM05M000972 ORTHO05M002154 3.8e-37 158.3 244 40.2
AET4Gv20077400 Aegilops tauschii HOM05M000972 ORTHO05M002154 4.9e-37 157.9 244 40.2
TraesCS4D03G0065000 Triticum aestivum HOM05M000972 ORTHO05M002154 4.9e-37 157.9 244 40.2
Dexi9A01G0011900 Digitaria exilis HOM05M000972 ORTHO05M002154 6.4e-37 157.5 187 48.7
Seita.9G124500 Setaria italica HOM05M000972 ORTHO05M002154 6.4e-37 157.5 244 40.2
Sevir.9G123300 Setaria viridis HOM05M000972 ORTHO05M002154 6.4e-37 157.5 244 40.2
Bradi1g10980 Brachypodium distachyon HOM05M000972 ORTHO05M002154 8.4e-37 157.1 244 40.2
Dexi9B01G0016420 Digitaria exilis HOM05M000972 ORTHO05M002154 8.4e-37 157.1 187 48.7
OsR498G0306887100.01 Oryza sativa ssp. indica HOM05M000972 ORTHO05M002154 8.4e-37 157.1 239 41.0
Zm00001eb054370 Zea mays B73 HOM05M000972 ORTHO05M002154 1.1e-36 156.8 244 40.2
Misin01G113500 Miscanthus sinensis HOM05M000972 ORTHO05M002154 2.4e-36 155.6 263 38.8
TraesCS4B03G0089900 Triticum aestivum HOM05M000972 ORTHO05M002154 2.4e-36 155.6 239 40.2
Zm00007a00025475 Zea mays B104 HOM05M000972 ORTHO05M002154 3.2e-36 155.2 244 40.2
V3.Lp_chr4_0G7314 Lolium perenne HOM05M000972 ORTHO05M002154 2.7e-35 152.1 239 39.7
OsKitaake03g306700 Oryza sativa Kitaake HOM05M000972 ORTHO05M002154 4.6e-35 151.4 229 40.6
Os03g0703900 Oryza sativa ssp. japonica HOM05M000972 ORTHO05M002154 4.6e-35 151.4 229 40.6
AagrBONN_evm.TU.Sc2ySwM_362.1263 Anthoceros agrestis HOM05M000972 ORTHO05M002154 6.0e-35 151.0 249 39.8
MBI09_g40925_MAGBIO Magnolia biondii HOM05M000972 ORTHO05M002154 6.0e-35 151.0 188 45.2
HPP92_027698 Vanilla planifolia HOM05M000972 ORTHO05M002154 6.0e-35 151.0 153 54.9
EJB05_04967 Eragrostis curvula HOM05M000972 ORTHO05M002154 5.1e-34 147.9 234 40.2
Sspon.01G0025880-1A Saccharum spontaneum HOM05M000972 ORTHO05M002154 5.1e-34 147.9 250 38.4
OB03G38200 Oryza brachyantha HOM05M000972 ORTHO05M002154 8.7e-34 147.1 229 41.0
TRIDC4BG006580 Triticum dicoccoides HOM05M000972 ORTHO05M002154 1.9e-33 146.0 213 41.8
PH02Gene29985 Phyllostachys edulis HOM05M000972 ORTHO05M002154 3.3e-33 145.2 181 49.2
Sspon.01G0025880-2B Saccharum spontaneum HOM05M000972 ORTHO05M002154 3.3e-33 145.2 230 40.0
Sspon.01G0025880-3D Saccharum spontaneum HOM05M000972 ORTHO05M002154 3.3e-33 145.2 230 40.0
GWHGAZTO076158 Oryza alta HOM05M000972 ORTHO05M005533 4.8e-32 141.4 181 48.6
GWHGAZTO026215 Oryza alta HOM05M000972 ORTHO05M002154 1.4e-31 139.8 181 48.1
MBI09_g01932_MAGBIO Magnolia biondii HOM05M000972 ORTHO05M002154 3.4e-30 135.2 174 45.4
Horvu_MOREX_7H01G115700 Hordeum vulgare HOM05M000972 ORTHO05M002154 1.0e-29 133.7 161 52.8
AagrBONN_evm.TU.Sc2ySwM_368.1598 Anthoceros agrestis HOM05M000972 ORTHO05M002154 1.4e-28 129.8 240 35.0
GWHGAORA062883 Cenchrus purpureus HOM05M000972 ORTHO05M002154 3.2e-28 128.6 179 49.2
PH02Gene09955 Phyllostachys edulis HOM05M000972 ORTHO05M005533 4.2e-28 128.3 127 58.3
GWHGAORA019327 Cenchrus purpureus HOM05M000972 ORTHO05M002154 6.9e-23 110.9 97 59.8
CALSI_Maker00013478 Calamus simplicifolius HOM05M000972 ORTHO05M002154 1.3e-21 106.7 254 33.1
GWHGAORA051299 Cenchrus purpureus HOM05M000972 ORTHO05M002154 5.5e-20 101.3 195 36.9
Pp3c27_2420 Physcomitrium patens HOM05M000972 ORTHO05M002154 9.4e-20 100.5 244 28.3
HPP92_027705 Vanilla planifolia HOM05M000972 ORTHO05M002154 9.7e-17 90.5 107 47.7
PRCOL_00001717 Prasinoderma coloniale HOM05M000972 ORTHO05M002154 1.3e-16 90.1 144 40.3
Zjn_sc00023.1.g01775.1.br Zoysia japonica ssp. nagirizaki HOM05M000972 ORTHO05M002154 1.3e-16 90.1 54 81.5
Mapoly0031s0181 Marchantia polymorpha HOM05M000972 ORTHO05M002154 2.9e-13 79.0 124 35.5
Mapoly0031s0177 Marchantia polymorpha HOM05M000972 ORTHO05M002154 3.8e-13 78.6 225 28.4
CBR_g6384 Chara braunii HOM05M000972 ORTHO05M002154 7.2e-12 74.3 115 37.4
SMO339G0070 Selaginella moellendorffii HOM05M000972 ORTHO05M002154 7.2e-12 74.3 217 24.9
AagrBONN_evm.TU.Sc2ySwM_344.2249 Anthoceros agrestis HOM05M001832 ORTHO05M001858 1.0e-10 70.5 115 32.2


User provided reference genes

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