Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zjn_sc00007.1.g06370.1.am.mkhc Zoysia japonica ssp. nagirizaki HOM05M005259 ORTHO05M002360 2.4e-76 288.1 156 100.0
Ot_Chr1_g19195 Oropetium thomaeum HOM05M005259 ORTHO05M002360 2.1e-40 168.7 221 54.8
EJB05_19836 Eragrostis curvula HOM05M005259 ORTHO05M002360 2.6e-35 151.8 222 48.6
Pahal.1G376500 Panicum hallii HOM05M005259 ORTHO05M002360 4.5e-27 124.4 218 43.1
MisinT408900 Miscanthus sinensis HOM05M005259 ORTHO05M002360 6.5e-26 120.6 216 43.5
Horvu_MOREX_6H01G441800 Hordeum vulgare HOM05M005259 ORTHO05M002360 3.2e-25 118.2 216 41.7
TraesCS6D03G0642600 Triticum aestivum HOM05M005259 ORTHO05M002360 5.5e-25 117.5 216 41.7
TraesCS6D03G0642700 Triticum aestivum HOM05M005259 ORTHO05M002360 5.5e-25 117.5 216 41.7
TRITD6Bv1G168710 Triticum turgidum HOM05M005259 ORTHO05M002360 3.6e-24 114.8 216 42.1
GWHGASIY032776 Secale cereale HOM05M005259 ORTHO05M002360 4.7e-24 114.4 216 41.2
GWHGASIY033015 Secale cereale HOM05M005259 ORTHO05M002360 4.7e-24 114.4 216 41.2
Misin03G329400 Miscanthus sinensis HOM05M005259 ORTHO05M002360 6.1e-24 114.0 133 52.6
TraesCS6A03G0139400 Triticum aestivum HOM05M005259 ORTHO05M002360 8.0e-24 113.6 205 41.5
TRITD6Av1G014390 Triticum turgidum HOM05M005259 ORTHO05M002360 8.0e-24 113.6 205 41.5
PH02Gene16429 Phyllostachys edulis HOM05M005259 ORTHO05M002360 1.0e-23 113.2 215 42.8
TRITD6Bv1G020450 Triticum turgidum HOM05M005259 ORTHO05M002360 1.4e-23 112.8 207 41.1
Horvu_MOREX_6H01G071900 Hordeum vulgare HOM05M005259 ORTHO05M002360 3.0e-23 111.7 211 40.8
GWHGASIY033016 Secale cereale HOM05M005259 ORTHO05M002360 3.0e-23 111.7 216 41.2
TraesCS6A03G0760000 Triticum aestivum HOM05M005259 ORTHO05M002360 8.8e-23 110.2 213 40.8
Seita.1G301200 Setaria italica HOM05M005259 ORTHO05M002360 1.2e-22 109.8 218 41.3
Sevir.1G307200 Setaria viridis HOM05M005259 ORTHO05M002360 1.2e-22 109.8 218 41.3
TraesCS6B03G0903500 Triticum aestivum HOM05M005259 ORTHO05M002360 2.0e-22 109.0 217 40.1
TraesCS6A03G0759900 Triticum aestivum HOM05M005259 ORTHO05M002360 2.6e-22 108.6 213 40.4
TRITD6Av1G180100 Triticum turgidum HOM05M005259 ORTHO05M002360 2.6e-22 108.6 213 40.4
Bradi3g56497 Brachypodium distachyon HOM05M005259 ORTHO05M002360 4.4e-22 107.8 223 41.3
TraesCS6B03G0903600 Triticum aestivum HOM05M005259 ORTHO05M002360 5.7e-22 107.5 217 39.2
AET6Gv20159500 Aegilops tauschii HOM05M005259 ORTHO05M002360 1.3e-21 106.3 218 39.9
TraesCS6D03G0131900 Triticum aestivum HOM05M005259 ORTHO05M002360 2.2e-21 105.5 220 39.5
TRIDC6AG007850 Triticum dicoccoides HOM05M005259 ORTHO05M002360 2.8e-21 105.1 193 41.5
Misin08G266400 Miscanthus sinensis HOM05M005259 ORTHO05M002360 4.8e-21 104.4 218 39.9
GWHGAORA025088 Cenchrus purpureus HOM05M005259 ORTHO05M002360 5.3e-20 100.9 218 38.5
Sobic.004G256300 Sorghum bicolor HOM05M005259 ORTHO05M002360 9.1e-20 100.1 215 39.1
Sspon.04G0004610-1A Saccharum spontaneum HOM05M005259 ORTHO05M002360 1.2e-19 99.8 216 38.9
Zm00001eb189090 Zea mays B73 HOM05M005259 ORTHO05M002360 2.9e-18 95.1 217 39.2
Zm00007a00039419 Zea mays B104 HOM05M005259 ORTHO05M002360 2.9e-18 95.1 217 39.2
Sspon.04G0004610-2B Saccharum spontaneum HOM05M005259 ORTHO05M002360 5.5e-17 90.9 225 36.0
GWHGAZTO072158 Oryza alta HOM05M005259 ORTHO05M002360 7.2e-17 90.5 219 39.7
GWHGAZTO020518 Oryza alta HOM05M005259 ORTHO05M002360 9.4e-17 90.1 212 40.1
PH02Gene08157 Phyllostachys edulis HOM05M005259 ORTHO05M002360 9.4e-17 90.1 190 40.0
Dexi1B01G0024690 Digitaria exilis HOM05M005259 ORTHO05M002360 1.6e-16 89.4 157 40.1
Dexi1A01G0025780 Digitaria exilis HOM05M005259 ORTHO05M002360 8.0e-16 87.0 157 40.1
OB02G37810 Oryza brachyantha HOM05M005259 ORTHO05M002360 1.0e-15 86.7 210 38.1
OsKitaake02g315200 Oryza sativa Kitaake HOM05M005259 ORTHO05M002360 1.0e-15 86.7 208 38.9
OsR498G0204677000.01 Oryza sativa ssp. indica HOM05M005259 ORTHO05M002360 1.0e-15 86.7 208 38.9
Os02g0723300 Oryza sativa ssp. japonica HOM05M005259 ORTHO05M002360 1.0e-15 86.7 208 38.9
GWHGAORA060561 Cenchrus purpureus HOM05M005259 ORTHO05M002360 2.0e-14 82.4 215 34.9
Zjn_sc00022.1.g02730.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM05M005259 ORTHO05M002360 6.3e-13 77.4 98 51.0
Aco003095 Ananas comosus HOM05M005259 ORTHO05M002360 3.1e-12 75.1 207 35.7
TraesCS6B03G0198700 Triticum aestivum HOM05M005259 ORTHO05M002360 3.1e-12 75.1 190 35.8
TRIDC6AG043740 Triticum dicoccoides HOM05M005259 ORTHO05M002360 5.9e-11 70.9 45 75.6
Spipo10G0033700 Spirodela polyrhiza HOM05M005259 ORTHO05M002360 1.7e-10 69.3 62 54.8
GWHGAORA060528 Cenchrus purpureus HOM05M005259 ORTHO05M002360 8.6e-10 67.0 185 34.6
Misin04G319400 Miscanthus sinensis HOM05M005259 ORTHO05M002360 8.6e-10 67.0 99 46.5
AET6Gv20721300 Aegilops tauschii HOM05M005259 ORTHO05M002360 1.1e-09 66.6 114 45.6
p5.00_sc00092_p0040 Elaeis guineensis HOM05M005259 ORTHO05M002360 6.1e-08 60.8 85 45.9
MBI17_g08176_MAGBIO Magnolia biondii HOM05M005259 ORTHO05M002360 8.0e-08 60.5 49 63.3
Ma06_g38140 Musa acuminata HOM05M005259 ORTHO05M002360 1.8e-07 59.3 79 46.8
CDE07G0676 Ceratophyllum demersum HOM05M005259 ORTHO05M002360 4.0e-07 58.2 78 44.9
evm.TU.AsparagusV1_01.3525.V1.1 Asparagus officinalis HOM05M005259 ORTHO05M002360 1.2e-06 56.6 75 45.3
Ma08_g25200 Musa acuminata HOM05M005259 ORTHO05M002360 1.2e-06 56.6 49 53.1
MBI19_g01939_MAGBIO Magnolia biondii HOM05M005259 ORTHO05M002360 5.7e-06 54.3 90 44.4
HPP92_000509 Vanilla planifolia HOM05M005259 ORTHO05M002360 5.7e-06 54.3 45 60.0


User provided reference genes

Program Settings