Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zjn_sc00004.1.g08780.1.am.mkhc Zoysia japonica ssp. nagirizaki HOM05M000972 ORTHO05M002154 5.0e-94 347.1 183 100.0
Zjn_sc00023.1.g01770.1.am.mkhc Zoysia japonica ssp. nagirizaki HOM05M000972 ORTHO05M002154 2.3e-91 338.2 183 97.3
Zm00001eb429920 Zea mays B73 HOM05M000972 ORTHO05M002154 4.9e-81 303.9 255 69.0
Zm00007a00017569 Zea mays B104 HOM05M000972 ORTHO05M002154 8.3e-81 303.1 255 68.6
Misin11G201100 Miscanthus sinensis HOM05M000972 ORTHO05M002154 1.1e-80 302.8 255 68.6
Seita.7G219500 Setaria italica HOM05M000972 ORTHO05M002154 1.4e-80 302.4 255 68.6
Ot_Chr6_g01546 Oropetium thomaeum HOM05M000972 ORTHO05M002154 2.4e-80 301.6 255 68.6
Pahal.7G273400 Panicum hallii HOM05M000972 ORTHO05M002154 2.4e-80 301.6 255 68.6
Sspon.07G0015700-1A Saccharum spontaneum HOM05M000972 ORTHO05M002154 2.4e-80 301.6 255 68.2
Sspon.07G0015700-2B Saccharum spontaneum HOM05M000972 ORTHO05M002154 2.4e-80 301.6 255 68.2
Sspon.07G0015700-3C Saccharum spontaneum HOM05M000972 ORTHO05M002154 2.4e-80 301.6 255 68.2
GWHGAORA021627 Cenchrus purpureus HOM05M000972 ORTHO05M002154 3.2e-80 301.2 255 68.2
Sevir.7G231200 Setaria viridis HOM05M000972 ORTHO05M002154 3.2e-80 301.2 255 68.2
GWHGAORA021641 Cenchrus purpureus HOM05M000972 ORTHO05M002154 5.4e-80 300.4 255 68.2
Sobic.006G198500 Sorghum bicolor HOM05M000972 ORTHO05M002154 7.0e-80 300.1 255 67.8
Zm00001eb072290 Zea mays B73 HOM05M000972 ORTHO05M002154 9.2e-80 299.7 255 67.8
Zm00007a00016099 Zea mays B104 HOM05M000972 ORTHO05M002154 9.2e-80 299.7 255 67.8
EJB05_39493 Eragrostis curvula HOM05M000972 ORTHO05M002154 1.6e-79 298.9 250 68.8
GWHGAORA062834 Cenchrus purpureus HOM05M000972 ORTHO05M002154 2.7e-79 298.1 255 67.5
Misin12G216300 Miscanthus sinensis HOM05M000972 ORTHO05M002154 3.5e-79 297.7 233 71.7
GWHGAZTO080877 Oryza alta HOM05M000972 ORTHO05M002154 1.9e-77 292.0 255 66.7
OB04G30500 Oryza brachyantha HOM05M000972 ORTHO05M002154 5.6e-77 290.4 255 65.9
OsKitaake04g244300 Oryza sativa Kitaake HOM05M000972 ORTHO05M002154 9.5e-77 289.7 255 65.5
Os04g0592600 Oryza sativa ssp. japonica HOM05M000972 ORTHO05M002154 9.5e-77 289.7 255 65.5
GWHGASIY011113 Secale cereale HOM05M000972 ORTHO05M002154 9.5e-77 289.7 255 65.5
Horvu_MOREX_2H01G653800 Hordeum vulgare HOM05M000972 ORTHO05M002154 2.1e-76 288.5 255 65.1
TraesCS2B03G1184800 Triticum aestivum HOM05M000972 ORTHO05M002154 2.1e-76 288.5 255 65.1
OsR498G0409196800.01 Oryza sativa ssp. indica HOM05M000972 ORTHO05M002154 2.8e-76 288.1 255 65.1
Bradi5g20030 Brachypodium distachyon HOM05M000972 ORTHO05M002154 3.6e-76 287.7 255 65.1
PH02Gene46303 Phyllostachys edulis HOM05M000972 ORTHO05M002154 3.6e-76 287.7 255 64.7
Horvu_MOREX_7H01G307800 Hordeum vulgare HOM05M000972 ORTHO05M002154 1.4e-75 285.8 234 69.2
TraesCS2A03G1060400 Triticum aestivum HOM05M000972 ORTHO05M002154 1.4e-75 285.8 255 64.7
AET2Gv20988400 Aegilops tauschii HOM05M000972 ORTHO05M002154 3.1e-75 284.6 255 64.3
TraesCS2D03G1000700 Triticum aestivum HOM05M000972 ORTHO05M002154 3.1e-75 284.6 255 64.3
Horvu_MOREX_2H01G323900 Hordeum vulgare HOM05M000972 ORTHO05M002154 9.2e-72 273.1 255 62.7
Sspon.07G0015700-4D Saccharum spontaneum HOM05M000972 ORTHO05M002154 1.6e-71 272.3 255 64.3
Zjn_sc00007.1.g08270.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM05M000972 ORTHO05M002154 2.8e-68 261.5 209 68.9
OB02G35850 Oryza brachyantha HOM05M000972 ORTHO05M002154 4.4e-66 254.2 256 59.8
TRIDC2BG068150 Triticum dicoccoides HOM05M000972 ORTHO05M002154 7.6e-66 253.4 234 63.2
PH02Gene03811 Phyllostachys edulis HOM05M000972 ORTHO05M002154 9.9e-66 253.1 256 59.0
Ot_Chr1_g19375 Oropetium thomaeum HOM05M000972 ORTHO05M002154 3.8e-65 251.1 255 57.3
OsKitaake02g294400 Oryza sativa Kitaake HOM05M000972 ORTHO05M002154 3.8e-65 251.1 254 59.1
Os02g0693500 Oryza sativa ssp. japonica HOM05M000972 ORTHO05M002154 3.8e-65 251.1 254 59.1
OsR498G0204580600.01 Oryza sativa ssp. indica HOM05M000972 ORTHO05M002154 8.4e-65 250.0 254 58.7
TRIDC2AG063960 Triticum dicoccoides HOM05M000972 ORTHO05M002154 1.9e-64 248.8 233 62.7
Zjn_sc00022.1.g04730.1.am.mkhc Zoysia japonica ssp. nagirizaki HOM05M000972 ORTHO05M002154 1.9e-64 248.8 255 56.1
GWHGAZTO071857 Oryza alta HOM05M000972 ORTHO05M002154 3.2e-64 248.1 256 58.2
EJB05_19593 Eragrostis curvula HOM05M000972 ORTHO05M002154 5.4e-64 247.3 255 56.1
Sspon.04G0023440-2C Saccharum spontaneum HOM05M000972 ORTHO05M002154 2.3e-62 241.9 255 54.9
Sspon.04G0023440-3D Saccharum spontaneum HOM05M000972 ORTHO05M002154 2.3e-62 241.9 255 54.9
Dexi1A01G0023840 Digitaria exilis HOM05M000972 ORTHO05M002154 1.1e-61 239.6 247 55.9
Misin07G451600 Miscanthus sinensis HOM05M000972 ORTHO05M002154 1.1e-61 239.6 255 54.1
TRITD2Av1G255400 Triticum turgidum HOM05M000972 ORTHO05M006735 1.9e-61 238.8 222 62.6
Sobic.004G274700 Sorghum bicolor HOM05M000972 ORTHO05M002154 2.5e-61 238.4 255 54.5
Pahal.1G356000 Panicum hallii HOM05M000972 ORTHO05M002154 4.3e-61 237.7 256 54.3
TRITD2Bv1G217800 Triticum turgidum HOM05M000972 ORTHO05M006735 5.6e-61 237.3 223 61.4
Sspon.04G0023440-1B Saccharum spontaneum HOM05M000972 ORTHO05M002154 9.6e-61 236.5 267 52.8
Sevir.1G286000 Setaria viridis HOM05M000972 ORTHO05M002154 9.6e-61 236.5 255 53.7
Dexi1B01G0022900 Digitaria exilis HOM05M000972 ORTHO05M002154 1.2e-60 236.1 256 54.3
GWHGAORA024879 Cenchrus purpureus HOM05M000972 ORTHO05M002154 2.8e-60 235.0 255 52.9
Zm00007a00022796 Zea mays B104 HOM05M000972 ORTHO05M002154 2.8e-60 235.0 266 52.3
Dexi7A01G0017320 Digitaria exilis HOM05M000972 ORTHO05M002154 3.6e-60 234.6 218 63.3
Dexi7B01G0017980 Digitaria exilis HOM05M000972 ORTHO05M002154 3.6e-60 234.6 218 63.3
Seita.1G280500 Setaria italica HOM05M000972 ORTHO05M002154 3.6e-60 234.6 255 53.3
Zm00001eb251300 Zea mays B73 HOM05M000972 ORTHO05M002154 2.3e-54 215.3 248 52.4
Spipo11G0009900 Spirodela polyrhiza HOM05M000972 ORTHO05M002154 6.6e-54 213.8 241 51.9
Dexi5B01G0040090 Digitaria exilis HOM05M000972 ORTHO05M002154 8.7e-54 213.4 129 82.9
Aco012947 Ananas comosus HOM05M000972 ORTHO05M002154 2.5e-53 211.8 245 50.2
HPP92_014660 Vanilla planifolia HOM05M000972 ORTHO05M002154 4.3e-53 211.1 241 51.9
evm.TU.AsparagusV1_10.113.V1.1 Asparagus officinalis HOM05M000972 ORTHO05M002154 7.3e-53 210.3 251 51.8
p5.00_sc00002_p0078 Elaeis guineensis HOM05M000972 ORTHO05M002154 2.1e-52 208.8 248 50.8
Asa6G02631 Allium sativum HOM05M000972 ORTHO05M002154 4.8e-52 207.6 251 49.4
p5.00_sc00696_p0002 Elaeis guineensis HOM05M000972 ORTHO05M002154 1.1e-51 206.5 238 51.7
Misin08G246900 Miscanthus sinensis HOM05M000972 ORTHO05M002154 1.4e-51 206.1 245 51.4
Glyma.09G206000 Glycine max HOM05M000972 ORTHO05M002154 3.1e-51 204.9 239 50.2
Glyma.01G016800 Glycine max HOM05M000972 ORTHO05M002154 4.0e-51 204.5 239 50.2
Potri.001G140200 Populus trichocarpa HOM05M000972 ORTHO05M002154 6.9e-51 203.8 239 50.6
Ma04_g19510 Musa acuminata HOM05M000972 ORTHO05M002154 2.6e-50 201.8 243 49.8
Ma04_g33900 Musa acuminata HOM05M000972 ORTHO05M002154 1.7e-49 199.1 235 50.6
Potri.003G094000 Populus trichocarpa HOM05M000972 ORTHO05M002154 1.1e-48 196.4 239 49.4
Solyc08g076670.3 Solanum lycopersicum HOM05M000972 ORTHO05M002154 1.1e-48 196.4 238 49.6
ATR0665G380 Amborella trichopoda HOM05M000972 ORTHO05M002154 1.4e-48 196.1 233 48.5
Zosma06g01460 Zostera marina HOM05M000972 ORTHO05M002154 2.4e-48 195.3 231 50.2
GWHGAZTO031193 Oryza alta HOM05M000972 ORTHO05M002154 9.3e-48 193.4 204 57.8
AT4G17790 Arabidopsis thaliana HOM05M000972 ORTHO05M002154 2.7e-47 191.8 233 48.9
CALSI_Maker00034794 Calamus simplicifolius HOM05M000972 ORTHO05M002154 7.9e-47 190.3 219 51.1
Horvu_MOREX_2H01G341600 Hordeum vulgare HOM05M000972 ORTHO05M002154 1.1e-45 186.4 199 55.8
Ma09_g23780 Musa acuminata HOM05M000972 ORTHO05M002154 3.1e-43 178.3 243 45.3
DDU613G0407 Dioscorea dumetorum HOM05M000972 ORTHO05M002154 1.2e-42 176.4 214 51.4
MBI04_g20347_MAGBIO Magnolia biondii HOM05M000972 ORTHO05M002154 3.8e-41 171.4 243 46.5
Ma04_g12280 Musa acuminata HOM05M000972 ORTHO05M002154 4.9e-41 171.0 243 44.0
GWHGAORA062883 Cenchrus purpureus HOM05M000972 ORTHO05M002154 1.2e-39 166.4 151 64.2
Dexi9A01G0011900 Digitaria exilis HOM05M000972 ORTHO05M002154 2.1e-39 165.6 163 52.8
Dexi9B01G0016420 Digitaria exilis HOM05M000972 ORTHO05M002154 2.7e-39 165.2 163 52.8
Glyma.20G175400 Glycine max HOM05M000972 ORTHO05M002154 6.0e-39 164.1 244 40.6
SEGI_12492 Sequoiadendron giganteum HOM05M000972 ORTHO05M002154 7.9e-39 163.7 243 38.7
Glyma.10G216600 Glycine max HOM05M000972 ORTHO05M002154 1.0e-38 163.3 244 41.0
CDE06G1585 Ceratophyllum demersum HOM05M000972 ORTHO05M002154 1.3e-38 162.9 119 69.7
SEGI_15843 Sequoiadendron giganteum HOM05M000972 ORTHO05M002154 1.3e-38 162.9 127 64.6
Potri.013G113000 Populus trichocarpa HOM05M000972 ORTHO05M002154 2.3e-38 162.2 242 40.9
p5.00_sc00001_p0843 Elaeis guineensis HOM05M000972 ORTHO05M002154 1.9e-37 159.1 245 40.0
Potri.019G083500 Populus trichocarpa HOM05M000972 ORTHO05M002154 1.9e-37 159.1 242 39.7
Solyc06g065400.3 Solanum lycopersicum HOM05M000972 ORTHO05M002154 2.5e-37 158.7 244 39.3
Ma06_g07870 Musa acuminata HOM05M000972 ORTHO05M002154 3.3e-37 158.3 247 39.3
Aco028764 Ananas comosus HOM05M000972 ORTHO05M002154 5.6e-37 157.5 244 39.3
p5.00_sc00031_p0139 Elaeis guineensis HOM05M000972 ORTHO05M002154 2.1e-36 155.6 245 39.2
Ma06_g05700 Musa acuminata HOM05M000972 ORTHO05M002154 6.2e-36 154.1 247 38.9
ATR0584G036 Amborella trichopoda HOM05M000972 ORTHO05M002154 8.2e-36 153.7 129 61.2
Ma07_g11650 Musa acuminata HOM05M000972 ORTHO05M002154 1.4e-35 152.9 236 39.4
CDE08G0639 Ceratophyllum demersum HOM05M000972 ORTHO05M002154 1.8e-35 152.5 236 39.4
Solyc11g018620.3 Solanum lycopersicum HOM05M000972 ORTHO05M002154 2.4e-35 152.1 244 39.3
AT4G09580 Arabidopsis thaliana HOM05M000972 ORTHO05M002154 3.1e-35 151.8 244 38.5
CDE02G2095 Ceratophyllum demersum HOM05M000972 ORTHO05M002154 4.0e-35 151.4 238 39.5
CALSI_Maker00018117 Calamus simplicifolius HOM05M000972 ORTHO05M002154 6.9e-35 150.6 130 58.5
DDU272G0262 Dioscorea dumetorum HOM05M000972 ORTHO05M002154 9.0e-35 150.2 242 38.0
Pp3c16_5420 Physcomitrium patens HOM05M000972 ORTHO05M002154 1.5e-34 149.4 234 38.5
AT1G71940 Arabidopsis thaliana HOM05M000972 ORTHO05M002154 2.0e-34 149.1 127 57.5
Spipo20G0017900 Spirodela polyrhiza HOM05M000972 ORTHO05M002154 5.8e-34 147.5 241 34.4
Asa7G05466 Allium sativum HOM05M000972 ORTHO05M002154 1.0e-33 146.7 244 37.7
SMO118G0527 Selaginella moellendorffii HOM05M000972 ORTHO05M002154 2.2e-33 145.6 249 39.4
HPP92_019220 Vanilla planifolia HOM05M000972 ORTHO05M002154 2.2e-33 145.6 236 36.9
Mapoly0001s0510 Marchantia polymorpha HOM05M000972 ORTHO05M002154 8.4e-33 143.7 246 37.0
Pp3c5_9530 Physcomitrium patens HOM05M000972 ORTHO05M002154 1.9e-32 142.5 223 38.6
Zosma01g19460 Zostera marina HOM05M000972 ORTHO05M002154 5.5e-32 141.0 244 36.9
evm.TU.AsparagusV1_03.1443.V1.1 Asparagus officinalis HOM05M000972 ORTHO05M002154 2.7e-31 138.7 211 39.8
Sspon.01G0025880-2B Saccharum spontaneum HOM05M000972 ORTHO05M002154 3.5e-31 138.3 220 38.6
Sspon.01G0025880-3D Saccharum spontaneum HOM05M000972 ORTHO05M002154 3.5e-31 138.3 220 38.6
Seita.9G124500 Setaria italica HOM05M000972 ORTHO05M002154 2.3e-30 135.6 235 37.0
Sevir.9G123300 Setaria viridis HOM05M000972 ORTHO05M002154 2.3e-30 135.6 235 37.0
HPP92_027698 Vanilla planifolia HOM05M000972 ORTHO05M002154 2.3e-30 135.6 128 53.9
Horvu_MOREX_4H01G040600 Hordeum vulgare HOM05M000972 ORTHO05M002154 5.1e-30 134.4 235 36.2
OsR498G0306887100.01 Oryza sativa ssp. indica HOM05M000972 ORTHO05M002154 5.1e-30 134.4 235 36.2
GWHGASIY018321 Secale cereale HOM05M000972 ORTHO05M002154 5.1e-30 134.4 235 36.2
TraesCS4A03G0705100 Triticum aestivum HOM05M000972 ORTHO05M002154 5.1e-30 134.4 235 36.2
TRIDC4AG042400 Triticum dicoccoides HOM05M000972 ORTHO05M002154 5.1e-30 134.4 235 36.2
AET4Gv20077400 Aegilops tauschii HOM05M000972 ORTHO05M002154 6.7e-30 134.0 235 36.2
TraesCS4D03G0065000 Triticum aestivum HOM05M000972 ORTHO05M002154 6.7e-30 134.0 235 36.2
Bradi1g10980 Brachypodium distachyon HOM05M000972 ORTHO05M002154 8.7e-30 133.7 235 36.2
Pahal.9G122400 Panicum hallii HOM05M000972 ORTHO05M002154 8.7e-30 133.7 235 36.6
AagrBONN_evm.TU.Sc2ySwM_362.1263 Anthoceros agrestis HOM05M000972 ORTHO05M002154 1.1e-29 133.3 222 39.2
Sobic.001G122500 Sorghum bicolor HOM05M000972 ORTHO05M002154 1.1e-29 133.3 235 36.2
V3.Lp_chr4_0G7314 Lolium perenne HOM05M000972 ORTHO05M002154 1.9e-29 132.5 235 36.2
Zm00001eb054370 Zea mays B73 HOM05M000972 ORTHO05M002154 4.3e-29 131.3 235 36.2
PH02Gene29985 Phyllostachys edulis HOM05M000972 ORTHO05M002154 5.7e-29 131.0 120 55.8
TraesCS4B03G0089900 Triticum aestivum HOM05M000972 ORTHO05M002154 5.7e-29 131.0 230 36.1
Zm00007a00025475 Zea mays B104 HOM05M000972 ORTHO05M002154 1.3e-28 129.8 235 36.2
EJB05_04967 Eragrostis curvula HOM05M000972 ORTHO05M002154 1.6e-28 129.4 243 36.2
Ot_Chr4_g08069 Oropetium thomaeum HOM05M000972 ORTHO05M002154 2.8e-28 128.6 235 35.3
OsKitaake03g306700 Oryza sativa Kitaake HOM05M000972 ORTHO05M002154 3.7e-28 128.3 224 35.7
Os03g0703900 Oryza sativa ssp. japonica HOM05M000972 ORTHO05M002154 3.7e-28 128.3 224 35.7
GWHGAZTO076158 Oryza alta HOM05M000972 ORTHO05M005533 8.2e-28 127.1 120 55.0
Sspon.01G0025880-1A Saccharum spontaneum HOM05M000972 ORTHO05M002154 8.2e-28 127.1 120 55.0
OB03G38200 Oryza brachyantha HOM05M000972 ORTHO05M002154 2.4e-27 125.6 225 36.0
GWHGAZTO026215 Oryza alta HOM05M000972 ORTHO05M002154 4.1e-27 124.8 120 54.2
TRIDC4BG006580 Triticum dicoccoides HOM05M000972 ORTHO05M002154 4.5e-26 121.3 204 36.8
MBI09_g40925_MAGBIO Magnolia biondii HOM05M000972 ORTHO05M002154 1.3e-25 119.8 189 38.6
Misin01G113500 Miscanthus sinensis HOM05M000972 ORTHO05M002154 1.1e-24 116.7 265 32.1
Horvu_MOREX_7H01G115700 Hordeum vulgare HOM05M000972 ORTHO05M002154 5.5e-24 114.4 153 51.0
AagrBONN_evm.TU.Sc2ySwM_368.1598 Anthoceros agrestis HOM05M000972 ORTHO05M002154 1.8e-22 109.4 117 52.1
GWHGAORA060317 Cenchrus purpureus HOM05M000972 ORTHO05M002154 6.7e-22 107.5 225 39.6
MBI09_g01932_MAGBIO Magnolia biondii HOM05M000972 ORTHO05M002154 8.7e-22 107.1 176 38.6
Zjn_sc00023.1.g01775.1.br Zoysia japonica ssp. nagirizaki HOM05M000972 ORTHO05M002154 3.3e-21 105.1 54 96.3
PH02Gene09955 Phyllostachys edulis HOM05M000972 ORTHO05M005533 4.3e-21 104.8 74 70.3
GWHGAORA051299 Cenchrus purpureus HOM05M000972 ORTHO05M002154 5.3e-19 97.8 184 34.8
HPP92_027705 Vanilla planifolia HOM05M000972 ORTHO05M002154 1.3e-17 93.2 96 49.0
CALSI_Maker00013478 Calamus simplicifolius HOM05M000972 ORTHO05M002154 9.4e-16 87.0 245 30.2
GWHGAORA019327 Cenchrus purpureus HOM05M000972 ORTHO05M002154 4.6e-15 84.7 99 47.5
Pp3c27_2420 Physcomitrium patens HOM05M000972 ORTHO05M002154 7.9e-15 84.0 240 27.5
Mapoly0031s0181 Marchantia polymorpha HOM05M000972 ORTHO05M002154 8.8e-14 80.5 88 46.6
PRCOL_00001717 Prasinoderma coloniale HOM05M000972 ORTHO05M002154 5.7e-13 77.8 160 36.2
Mapoly0031s0177 Marchantia polymorpha HOM05M000972 ORTHO05M002154 7.4e-13 77.4 106 40.6
CBR_g6384 Chara braunii HOM05M000972 ORTHO05M002154 4.8e-12 74.7 89 43.8
AagrBONN_evm.TU.Sc2ySwM_344.2249 Anthoceros agrestis HOM05M001832 ORTHO05M001858 9.1e-11 70.5 89 40.4
SMO339G0070 Selaginella moellendorffii HOM05M000972 ORTHO05M002154 1.7e-09 66.2 85 38.8


User provided reference genes

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