Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
V3.Lp_chr7_0.1G1210 Lolium perenne HOM05M001368 ORTHO05M000884 3.7e-48 193.7 95 100.0
V3.Lp_chr7_0.1G1244 Lolium perenne HOM05M001368 ORTHO05M000884 3.7e-48 193.7 95 100.0
V3.Lp_scaffold_4559G8 Lolium perenne HOM05M001368 ORTHO05M000884 3.7e-48 193.7 95 100.0
V3.Lp_scaffold_891G16 Lolium perenne HOM05M001368 ORTHO05M000884 3.7e-48 193.7 95 100.0
V3.Lp_scaffold_633G62 Lolium perenne HOM05M001368 ORTHO05M000884 7.0e-47 189.5 95 97.9
OsKitaake01g066188 Oryza sativa Kitaake HOM05M001368 ORTHO05M000884 3.5e-46 187.2 95 94.7
OsKitaake02g154800 Oryza sativa Kitaake HOM05M001368 ORTHO05M000884 3.5e-46 187.2 95 94.7
OsKitaake10g165808 Oryza sativa Kitaake HOM05M001368 ORTHO05M000884 3.5e-46 187.2 95 94.7
OsR498G0022238000.01 Oryza sativa ssp. indica HOM05M001368 ORTHO05M000884 3.5e-46 187.2 95 94.7
Pahal.1G229800 Panicum hallii HOM05M001368 ORTHO05M000884 3.5e-46 187.2 95 94.7
GWHGASIY019876 Secale cereale HOM05M001368 ORTHO05M000884 5.9e-46 186.4 95 93.7
TraesCS7B03G0216100 Triticum aestivum HOM05M001368 ORTHO05M000884 5.9e-46 186.4 95 93.7
TRIDC6BG056090 Triticum dicoccoides HOM05M001368 ORTHO05M000884 5.9e-46 186.4 95 93.7
Ot_Chr7_g13546 Oropetium thomaeum HOM05M001368 ORTHO05M000884 7.7e-46 186.0 95 93.7
Ot_Chr7_g22392 Oropetium thomaeum HOM05M001368 ORTHO05M000884 7.7e-46 186.0 95 93.7
Ot_Un136_gn40117 Oropetium thomaeum HOM05M001368 ORTHO05M000884 7.7e-46 186.0 95 93.7
Ot_Un168_gn40560 Oropetium thomaeum HOM05M001368 ORTHO05M000884 7.7e-46 186.0 95 93.7
Ot_Un3_gn40886 Oropetium thomaeum HOM05M001368 ORTHO05M000884 7.7e-46 186.0 95 93.7
Ot_Un9_gn41195 Oropetium thomaeum HOM05M001368 ORTHO05M000884 7.7e-46 186.0 95 93.7
AET2Gv20750100 Aegilops tauschii HOM05M001368 ORTHO05M000884 1.3e-45 185.3 95 93.7
TraesCS5D03G0846500 Triticum aestivum HOM05M001368 ORTHO05M000884 1.3e-45 185.3 95 93.7
GWHGAORA002206 Cenchrus purpureus HOM05M001368 ORTHO05M000884 1.7e-45 184.9 95 92.6
GWHGAORA002271 Cenchrus purpureus HOM05M001368 ORTHO05M000884 1.7e-45 184.9 95 92.6
TRITD3Bv1G075910 Triticum turgidum HOM05M001368 ORTHO05M000884 1.7e-45 184.9 95 92.6
Zm00007a00017133 Zea mays B104 HOM05M001368 ORTHO05M000884 1.7e-45 184.9 95 92.6
Zm00007a00022328 Zea mays B104 HOM05M001368 ORTHO05M000884 1.7e-45 184.9 95 92.6
Zm00007a00029474 Zea mays B104 HOM05M001368 ORTHO05M000884 1.7e-45 184.9 95 92.6
Pahal.3G033400 Panicum hallii HOM05M001368 ORTHO05M000884 2.2e-45 184.5 95 93.7
TraesCS2D03G0545300 Triticum aestivum HOM05M001368 ORTHO05M000884 2.2e-45 184.5 95 93.7
TraesCS1B03G1091500 Triticum aestivum HOM05M001368 ORTHO05M000884 5.0e-45 183.3 95 91.6
OsKitaake04g164800 Oryza sativa Kitaake HOM05M001368 ORTHO05M000884 1.1e-44 182.2 95 93.7
Bradi3g27267 Brachypodium distachyon HOM05M001368 ORTHO05M000884 1.9e-44 181.4 95 92.6
TraesCS1D03G0473000 Triticum aestivum HOM05M001368 ORTHO05M000884 4.2e-44 180.3 95 93.7
TraesCSU03G0416000 Triticum aestivum HOM05M001368 ORTHO05M000884 9.4e-44 179.1 95 91.6
Zm00007a00001160 Zea mays B104 HOM05M001368 ORTHO05M000884 1.2e-43 178.7 95 90.5
Zm00007a00002177 Zea mays B104 HOM05M001368 ORTHO05M000884 1.2e-43 178.7 95 90.5
Aco024829 Ananas comosus HOM05M001368 ORTHO05M000884 2.7e-43 177.6 95 88.4
TRITD1Bv1G206430 Triticum turgidum HOM05M001368 ORTHO05M000884 4.0e-42 173.7 90 92.2
Asa3G00842 Allium sativum HOM05M001368 ORTHO05M000884 2.0e-41 171.4 95 87.4
Asa7G05756 Allium sativum HOM05M001368 ORTHO05M000884 3.3e-41 170.6 95 87.4
Asa0G03808 Allium sativum HOM05M001368 ORTHO05M000884 7.5e-41 169.5 95 86.3
Asa7G03180 Allium sativum HOM05M001368 ORTHO05M000884 7.5e-41 169.5 95 86.3
ATR0043G018 Amborella trichopoda HOM05M001368 ORTHO05M000884 6.3e-40 166.4 95 82.1
DDU125G0051 Dioscorea dumetorum HOM05M001368 ORTHO05M000884 8.2e-40 166.0 97 83.5
DDU581G0019 Dioscorea dumetorum HOM05M001368 ORTHO05M000884 8.2e-40 166.0 97 83.5
DDU643G0035 Dioscorea dumetorum HOM05M001368 ORTHO05M000884 8.2e-40 166.0 97 83.5
Solyc00g500087.1 Solanum lycopersicum HOM05M001368 ORTHO05M000884 8.2e-40 166.0 95 82.1
Solyc00g500124.1 Solanum lycopersicum HOM05M001368 ORTHO05M000884 8.2e-40 166.0 95 82.1
Solyc00g500192.1 Solanum lycopersicum HOM05M001368 ORTHO05M000884 8.2e-40 166.0 95 82.1
ATCG01110 Arabidopsis thaliana HOM05M001368 ORTHO05M000884 2.7e-38 161.0 95 77.9
SEGI_36880 Sequoiadendron giganteum HOM05M001368 ORTHO05M000884 1.0e-37 159.1 95 77.9
SEGI_41539 Sequoiadendron giganteum HOM05M001368 ORTHO05M000884 1.0e-37 159.1 95 77.9
Asa5G04353 Allium sativum HOM05M001368 ORTHO05M000884 1.3e-37 158.7 95 81.1
ATR0924G001 Amborella trichopoda HOM05M001368 ORTHO05M000884 1.7e-37 158.3 95 77.9
GWHGASIY019912 Secale cereale HOM05M001368 ORTHO05M000884 2.1e-35 151.4 95 80.0
TRIDC7BG012010 Triticum dicoccoides HOM05M001368 ORTHO05M000884 4.7e-35 150.2 76 94.7
Mapoly0048s0043 Marchantia polymorpha HOM05M001368 ORTHO05M000884 8.0e-35 149.4 95 72.6
AET2Gv20473300 Aegilops tauschii HOM05M001368 ORTHO05M000884 1.4e-34 148.7 76 94.7
Solyc10g047400.1 Solanum lycopersicum HOM05M001368 ORTHO05M000884 8.8e-34 146.0 93 73.1
SEGI_11816 Sequoiadendron giganteum HOM05M001368 ORTHO05M000884 2.6e-33 144.4 86 79.1
SEGI_26586 Sequoiadendron giganteum HOM05M001368 ORTHO05M000884 2.6e-33 144.4 86 79.1
AET0Gv20052700 Aegilops tauschii HOM05M001368 ORTHO05M000884 1.7e-29 131.7 65 93.8
GWHGAZTO010746 Oryza alta HOM05M001368 ORTHO05M000884 1.5e-28 128.6 71 87.3
OsR498G0408750000.01 Oryza sativa ssp. indica HOM05M001368 ORTHO05M000884 1.9e-28 128.3 66 92.4
SMO086G0065 Selaginella moellendorffii HOM05M001368 ORTHO05M000884 3.2e-28 127.5 93 67.7
Seita.J016300 Setaria italica HOM05M001368 ORTHO05M000884 1.6e-27 125.2 95 70.5
Asa6G04203 Allium sativum HOM05M001368 ORTHO05M000884 5.7e-25 116.7 66 83.3
AET3Gv20923400 Aegilops tauschii HOM05M001368 ORTHO05M000884 9.8e-25 115.9 69 81.2
Solyc00g500280.1 Solanum lycopersicum HOM05M001368 ORTHO05M000884 6.3e-24 113.2 86 61.6
DDU688G0022 Dioscorea dumetorum HOM05M001368 ORTHO05M000884 9.2e-23 109.4 71 77.5
Solyc08g022150.2 Solanum lycopersicum HOM05M001368 ORTHO05M000884 2.3e-18 94.7 66 66.7
AET5Gv20749200 Aegilops tauschii HOM05M001368 ORTHO05M000884 3.0e-18 94.4 51 86.3
TRIDC3AG060960 Triticum dicoccoides HOM05M001368 ORTHO05M000884 3.4e-09 64.3 33 93.9
TRIDC7AG000960 Triticum dicoccoides HOM05M001368 ORTHO05M000884 3.4e-09 64.3 33 93.9
Asa4G00181 Allium sativum HOM05M001368 ORTHO05M000884 4.9e-08 60.5 32 90.6
Cre09.g405850 Chlamydomonas reinhardtii HOM05M001788 ORTHO05M000884 1.4e-07 58.9 91 38.5
Asa0G03292 Allium sativum HOM05M001368 ORTHO05M000884 2.4e-07 58.2 66 57.6
Asa2G02348 Allium sativum HOM05M001368 ORTHO05M000884 3.2e-07 57.8 30 93.3
Asa5G02666 Allium sativum HOM05M001368 ORTHO05M000884 1.6e-06 55.5 66 56.1
Asa7G00541 Allium sativum HOM05M001368 ORTHO05M000884 1.6e-06 55.5 30 90.0
Solyc07g032430.1 Solanum lycopersicum HOM05M001368 ORTHO05M000884 1.6e-06 55.5 37 73.0
Solyc11g021237.1 Solanum lycopersicum HOM05M001368 ORTHO05M000884 2.0e-06 55.1 40 67.5
SEGI_17486 Sequoiadendron giganteum HOM05M001368 ORTHO05M000884 4.6e-06 53.9 32 78.1


User provided reference genes

Program Settings