Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
V3.Lp_scaffold_11G12 Lolium perenne HOM05M009837 ORTHO05M001009 2.6e-164 581.6 397 100.0
V3.Lp_chr5_0G3380 Lolium perenne HOM05M009837 ORTHO05M001009 1.3e-142 509.6 412 81.1
V3.Lp_scaffold_8630G2 Lolium perenne HOM05M009837 ORTHO05M001009 1.1e-138 496.5 391 89.5
V3.Lp_scaffold_11G8 Lolium perenne HOM05M009837 ORTHO05M001009 7.2e-138 493.8 386 92.2
V3.Lp_chr4_0G29418 Lolium perenne HOM05M009837 ORTHO05M001009 2.5e-130 468.8 391 90.3
V3.Lp_chr4_0G29410 Lolium perenne HOM05M009837 ORTHO05M001009 1.2e-116 423.3 293 91.1
V3.Lp_scaffold_6125G2 Lolium perenne HOM05M009837 ORTHO05M001009 2.1e-105 386.0 287 86.1
V3.Lp_chr4_0G27858 Lolium perenne HOM05M009837 ORTHO05M001009 3.6e-105 385.2 249 91.2
V3.Lp_chr4_0G28478 Lolium perenne HOM05M009837 ORTHO05M001009 3.5e-76 288.9 452 53.1
TraesCS6A03G0988200 Triticum aestivum HOM05M009837 ORTHO05M001009 1.1e-40 171.0 184 50.5
GWHGASIY035375 Secale cereale HOM05M009837 ORTHO05M001009 5.3e-40 168.7 183 49.7
AET6Gv20957700 Aegilops tauschii HOM05M009837 ORTHO05M001009 1.5e-39 167.2 181 49.7
TraesCS6B03G1211800 Triticum aestivum HOM05M009837 ORTHO05M001009 2.9e-38 162.9 181 48.6
Horvu_MOREX_6H01G580000 Hordeum vulgare HOM05M009837 ORTHO05M001009 1.1e-37 161.0 180 49.4
PH02Gene10506 Phyllostachys edulis HOM05M000141 ORTHO05M001009 1.4e-35 154.1 207 48.3
TraesCS6B03G0920500 Triticum aestivum HOM05M001241 ORTHO05M001009 5.1e-35 152.1 209 42.6
TraesCS6B03G0920700 Triticum aestivum HOM05M001241 ORTHO05M001009 6.7e-35 151.8 209 43.1
AET6Gv20735200 Aegilops tauschii HOM05M001241 ORTHO05M001009 5.7e-34 148.7 204 43.1
Horvu_MOREX_6H01G452400 Hordeum vulgare HOM05M001241 ORTHO05M001009 1.3e-33 147.5 207 45.9
TraesCS3A03G0246600 Triticum aestivum HOM05M001241 ORTHO05M001009 2.2e-33 146.7 171 48.0
TraesCS5D03G0260400 Triticum aestivum HOM05M001241 ORTHO05M001009 6.3e-33 145.2 231 40.7
PH02Gene20724 Phyllostachys edulis HOM05M001241 ORTHO05M001009 8.2e-33 144.8 211 42.2
TraesCS5B03G0264400 Triticum aestivum HOM05M001241 ORTHO05M001009 2.4e-32 143.3 230 41.3
AET5Gv20256500 Aegilops tauschii HOM05M001241 ORTHO05M001009 4.1e-32 142.5 231 40.3
TraesCS5A03G0248700 Triticum aestivum HOM05M001241 ORTHO05M001009 4.1e-32 142.5 237 40.5
TRITD5Av1G055540 Triticum turgidum HOM05M001241 ORTHO05M001009 4.1e-32 142.5 237 40.5
TRITD5Bv1G050250 Triticum turgidum HOM05M001241 ORTHO05M001009 5.3e-32 142.1 230 40.9
PH02Gene18832 Phyllostachys edulis HOM05M001241 ORTHO05M001009 7.0e-32 141.7 212 41.5
GWHGASIY024993 Secale cereale HOM05M001241 ORTHO05M001009 2.9e-30 136.3 198 42.9
Pahal.8G047600 Panicum hallii HOM05M001241 ORTHO05M001009 7.2e-29 131.7 217 39.6
Sevir.8G055200 Setaria viridis HOM05M001241 ORTHO05M001009 2.0e-26 123.6 221 38.5
GWHGAORA011140 Cenchrus purpureus HOM05M001241 ORTHO05M001009 3.3e-26 122.9 218 38.1
V3.Lp_chr1_0G14324 Lolium perenne HOM05M001241 ORTHO05M001009 4.4e-26 122.5 211 40.3
GWHGAORA011139 Cenchrus purpureus HOM05M001241 ORTHO05M001009 7.4e-26 121.7 215 38.6
V3.Lp_chr4_0G22374 Lolium perenne HOM05M001241 ORTHO05M001009 7.4e-26 121.7 220 38.6
Misin09G053900 Miscanthus sinensis HOM05M001241 ORTHO05M001009 2.8e-25 119.8 231 37.2
Bradi4g24060 Brachypodium distachyon HOM05M001241 ORTHO05M001009 4.1e-24 115.9 237 32.5
Dexi8B01G0004310 Digitaria exilis HOM05M001241 ORTHO05M001009 4.1e-24 115.9 222 36.0
EJB05_06168 Eragrostis curvula HOM05M001241 ORTHO05M001009 7.0e-24 115.2 186 39.8
GWHGAORA011185 Cenchrus purpureus HOM05M001241 ORTHO05M001009 1.2e-23 114.4 189 38.1
Bradi1g36200 Brachypodium distachyon HOM05M001241 ORTHO05M001009 3.5e-23 112.8 179 38.5
GWHGAORA042727 Cenchrus purpureus HOM05M001241 ORTHO05M001009 2.2e-22 110.2 189 37.0
Pahal.8G047700 Panicum hallii HOM05M001241 ORTHO05M001009 2.2e-22 110.2 217 35.5
Sspon.05G0029330-1B Saccharum spontaneum HOM05M001241 ORTHO05M001009 2.2e-22 110.2 222 38.3
GWHGAZTO062861 Oryza alta HOM05M001241 ORTHO05M001009 2.5e-21 106.7 183 41.0
Bradi4g24100 Brachypodium distachyon HOM05M001241 ORTHO05M001009 9.4e-21 104.8 182 35.2
Sobic.005G060000 Sorghum bicolor HOM05M001241 ORTHO05M001009 2.7e-20 103.2 225 34.7
GWHGAZTO010711 Oryza alta HOM05M001241 ORTHO05M001009 5.2e-19 99.0 190 38.4
Sobic.005G059900 Sorghum bicolor HOM05M001241 ORTHO05M001009 1.2e-18 97.8 190 35.3
PH02Gene23507 Phyllostachys edulis HOM05M009837 ORTHO05M001009 9.7e-18 94.7 114 47.4
Dexi8A01G0005160 Digitaria exilis HOM05M001241 ORTHO05M001009 4.1e-16 89.4 179 46.9
OsKitaake11g054000 Oryza sativa Kitaake HOM05M001241 ORTHO05M001009 1.2e-15 87.8 180 37.2
Misin10G046000 Miscanthus sinensis HOM05M001241 ORTHO05M001009 3.5e-15 86.3 222 33.8
Dexi8B01G0004320 Digitaria exilis HOM05M001241 ORTHO05M001009 1.3e-14 84.3 105 45.7
Dexi8A01G0005150 Digitaria exilis HOM05M009837 ORTHO05M001009 3.8e-14 82.8 102 41.2
OB11G13990 Oryza brachyantha HOM05M001241 ORTHO05M001009 3.6e-12 76.3 181 35.4
GWHGAZTO042436 Oryza alta HOM05M001241 ORTHO05M001009 4.7e-12 75.9 160 34.4
PH02Gene19561 Phyllostachys edulis HOM05M001241 ORTHO05M001009 8.0e-12 75.1 157 31.8
OsR498G0713975100.01 Oryza sativa ssp. indica HOM05M001241 ORTHO05M001009 1.0e-11 74.7 161 31.7
GWHGAZTO090632 Oryza alta HOM05M001241 ORTHO05M001009 1.8e-11 73.9 160 31.9
GWHGAZTO090633 Oryza alta HOM05M001241 ORTHO05M001009 1.8e-11 73.9 160 31.9
GWHGAZTO090636 Oryza alta HOM05M001241 ORTHO05M001009 1.8e-11 73.9 160 31.9
GWHGAZTO090642 Oryza alta HOM05M001241 ORTHO05M001009 1.8e-11 73.9 160 31.9
Os07g0272700 Oryza sativa ssp. japonica HOM05M001241 ORTHO05M001009 2.3e-11 73.6 159 32.7
GWHGAZTO042424 Oryza alta HOM05M001241 ORTHO05M001009 3.0e-11 73.2 160 33.8
GWHGAZTO042972 Oryza alta HOM05M001241 ORTHO05M001009 3.0e-11 73.2 160 32.5
OsKitaake07g063300 Oryza sativa Kitaake HOM05M001241 ORTHO05M001009 4.0e-11 72.8 227 31.3
GWHGAZTO042956 Oryza alta HOM05M001241 ORTHO05M001009 5.2e-11 72.4 160 32.5
GWHGAZTO042957 Oryza alta HOM05M001241 ORTHO05M001009 5.2e-11 72.4 160 32.5
GWHGAZTO042959 Oryza alta HOM05M001241 ORTHO05M001009 5.2e-11 72.4 160 32.5
GWHGAZTO042962 Oryza alta HOM05M001241 ORTHO05M001009 5.2e-11 72.4 160 32.5
GWHGAZTO090121 Oryza alta HOM05M001241 ORTHO05M001009 5.2e-11 72.4 159 33.3
OsKitaake07g063000 Oryza sativa Kitaake HOM05M001241 ORTHO05M001009 5.2e-11 72.4 224 29.9
GWHGAORA031452 Cenchrus purpureus HOM05M001241 ORTHO05M001009 6.8e-11 72.0 170 28.8
GWHGAZTO042953 Oryza alta HOM05M001241 ORTHO05M001009 6.8e-11 72.0 161 31.7
GWHGAZTO042974 Oryza alta HOM05M001241 ORTHO05M001009 6.8e-11 72.0 161 31.7
PH02Gene19563 Phyllostachys edulis HOM05M001241 ORTHO05M001009 6.8e-11 72.0 157 31.2
PH02Gene19564 Phyllostachys edulis HOM05M001241 ORTHO05M001009 6.8e-11 72.0 157 31.2
GWHGAZTO090090 Oryza alta HOM05M001241 ORTHO05M001009 8.8e-11 71.6 159 32.7
GWHGAZTO090091 Oryza alta HOM05M001241 ORTHO05M001009 8.8e-11 71.6 159 32.7
GWHGAZTO090092 Oryza alta HOM05M001241 ORTHO05M001009 8.8e-11 71.6 159 32.7
GWHGAZTO090100 Oryza alta HOM05M001241 ORTHO05M001009 8.8e-11 71.6 159 32.7
GWHGAZTO090107 Oryza alta HOM05M001241 ORTHO05M001009 8.8e-11 71.6 159 32.7
GWHGAZTO090108 Oryza alta HOM05M001241 ORTHO05M001009 8.8e-11 71.6 159 32.7
GWHGAZTO090112 Oryza alta HOM05M001241 ORTHO05M001009 8.8e-11 71.6 159 32.7
GWHGAZTO090117 Oryza alta HOM05M001241 ORTHO05M001009 8.8e-11 71.6 159 32.7
GWHGAZTO090131 Oryza alta HOM05M001241 ORTHO05M001009 8.8e-11 71.6 159 32.7
OB07G17130 Oryza brachyantha HOM05M001241 ORTHO05M001009 8.8e-11 71.6 161 30.4
GWHGAORA037754 Cenchrus purpureus HOM05M001241 ORTHO05M001009 1.2e-10 71.2 159 31.4
PH02Gene12840 Phyllostachys edulis HOM05M001241 ORTHO05M001009 1.2e-10 71.2 157 30.6
PH02Gene50586 Phyllostachys edulis HOM05M001241 ORTHO05M001009 1.2e-10 71.2 157 30.6
Sevir.1G187100 Setaria viridis HOM05M001241 ORTHO05M001009 1.2e-10 71.2 160 30.6
GWHGAZTO090126 Oryza alta HOM05M001241 ORTHO05M001009 1.5e-10 70.9 159 32.7
PH02Gene18630 Phyllostachys edulis HOM05M001241 ORTHO05M001009 1.5e-10 70.9 159 30.8
Seita.5G332800 Setaria italica HOM05M001241 ORTHO05M001009 1.5e-10 70.9 164 31.1
Sevir.5G336900 Setaria viridis HOM05M001241 ORTHO05M001009 1.5e-10 70.9 164 31.1
GWHGAORA056472 Cenchrus purpureus HOM05M001241 ORTHO05M001009 2.0e-10 70.5 159 31.4
PH02Gene19562 Phyllostachys edulis HOM05M001241 ORTHO05M001009 2.0e-10 70.5 157 30.6
GWHGAORA016748 Cenchrus purpureus HOM05M001241 ORTHO05M001009 3.4e-10 69.7 201 28.9
PH02Gene00727 Phyllostachys edulis HOM05M001241 ORTHO05M001009 3.4e-10 69.7 158 30.4
GWHGAZTO025799 Oryza alta HOM05M001241 ORTHO05M001009 4.4e-10 69.3 161 32.3
OsKitaake07g086600 Oryza sativa Kitaake HOM05M001241 ORTHO05M001009 4.4e-10 69.3 160 30.0
Pahal.5G143500 Panicum hallii HOM05M001241 ORTHO05M001009 4.4e-10 69.3 164 30.5
Seita.1G183600 Setaria italica HOM05M001241 ORTHO05M001009 4.4e-10 69.3 206 28.6
GWHGAORA050088 Cenchrus purpureus HOM05M001241 ORTHO05M001009 9.8e-10 68.2 187 28.9
GWHGAORA016796 Cenchrus purpureus HOM05M001241 ORTHO05M001009 1.3e-09 67.8 143 31.5
GWHGAZTO025250 Oryza alta HOM05M001241 ORTHO05M001009 1.3e-09 67.8 164 30.5
PH02Gene00726 Phyllostachys edulis HOM05M001241 ORTHO05M001009 1.7e-09 67.4 158 29.7
PH02Gene50618 Phyllostachys edulis HOM05M001241 ORTHO05M001009 1.7e-09 67.4 158 29.7
PH02Gene50619 Phyllostachys edulis HOM05M001241 ORTHO05M001009 1.7e-09 67.4 158 29.7
Seita.1G163800 Setaria italica HOM05M001241 ORTHO05M001009 1.7e-09 67.4 207 30.0
Sevir.1G165700 Setaria viridis HOM05M001241 ORTHO05M001009 1.7e-09 67.4 207 30.0
GWHGAORA024002 Cenchrus purpureus HOM05M001241 ORTHO05M001009 2.8e-09 66.6 189 29.1
GWHGAZTO090426 Oryza alta HOM05M001241 ORTHO05M001009 2.8e-09 66.6 165 30.3
OsKitaake07g130200 Oryza sativa Kitaake HOM05M001241 ORTHO05M001009 2.8e-09 66.6 168 30.4
Os07g0456900 Oryza sativa ssp. japonica HOM05M001241 ORTHO05M001009 2.8e-09 66.6 168 30.4
Pahal.1G257700 Panicum hallii HOM05M001241 ORTHO05M001009 2.8e-09 66.6 159 32.7
PH02Gene25869 Phyllostachys edulis HOM05M001241 ORTHO05M001009 2.8e-09 66.6 158 29.7
V3.Lp_chr3_0G9310 Lolium perenne HOM05M001241 ORTHO05M001009 3.7e-09 66.2 158 29.7
OsR498G0714218600.01 Oryza sativa ssp. indica HOM05M001241 ORTHO05M001009 3.7e-09 66.2 168 30.4
Dexi1B01G0015600 Digitaria exilis HOM05M000062 ORTHO05M000067 4.8e-09 65.9 162 31.5
GWHGAZTO034123 Oryza alta HOM05M001241 ORTHO05M001009 4.8e-09 65.9 159 30.8
TraesCS2B03G0233900 Triticum aestivum HOM05M001241 ORTHO05M001009 4.8e-09 65.9 187 27.3
TraesCS2D03G0165600 Triticum aestivum HOM05M001241 ORTHO05M001009 4.8e-09 65.9 156 28.8
OsKitaake03g243500 Oryza sativa Kitaake HOM05M001241 ORTHO05M001009 6.3e-09 65.5 196 27.6
OsR498G0306472300.01 Oryza sativa ssp. indica HOM05M001241 ORTHO05M001009 6.3e-09 65.5 196 27.6
Sobic.010G090800 Sorghum bicolor HOM05M001241 ORTHO05M001009 6.3e-09 65.5 156 30.1
Misin19G098600 Miscanthus sinensis HOM05M001241 ORTHO05M001009 8.3e-09 65.1 156 30.1
EJB05_06183 Eragrostis curvula HOM05M009837 ORTHO05M001009 1.4e-08 64.3 169 30.8
OB07G14680 Oryza brachyantha HOM05M001241 ORTHO05M001009 1.4e-08 64.3 160 31.9
OsKitaake07g130300 Oryza sativa Kitaake HOM05M001241 ORTHO05M001009 1.4e-08 64.3 168 29.8
Pahal.4G260900 Panicum hallii HOM05M001241 ORTHO05M001009 1.4e-08 64.3 160 29.4
GWHGAZTO043670 Oryza alta HOM05M001241 ORTHO05M001009 2.4e-08 63.5 167 28.7
OsKitaake03g243401 Oryza sativa Kitaake HOM05M001241 ORTHO05M001009 2.4e-08 63.5 168 28.0
EJB05_23971 Eragrostis curvula HOM05M001241 ORTHO05M001009 3.1e-08 63.2 172 29.7
GWHGAORA044965 Cenchrus purpureus HOM05M001241 ORTHO05M001009 5.4e-08 62.4 170 26.5
EJB05_56503 Eragrostis curvula HOM05M001241 ORTHO05M001009 5.4e-08 62.4 169 29.6
EJB05_53146 Eragrostis curvula HOM05M009837 ORTHO05M001009 7.0e-08 62.0 114 36.8
EJB05_56812 Eragrostis curvula HOM05M002484 ORTHO05M001009 7.0e-08 62.0 172 29.7
V3.Lp_chr3_0G7248 Lolium perenne HOM05M001241 ORTHO05M001009 7.0e-08 62.0 205 26.8
Ot_Chr1_g09268 Oropetium thomaeum HOM05M001241 ORTHO05M001009 7.0e-08 62.0 183 29.0
EJB05_56811 Eragrostis curvula HOM05M001241 ORTHO05M001009 1.6e-07 60.8 230 27.0
Pahal.1G145100 Panicum hallii HOM05M001241 ORTHO05M001009 1.6e-07 60.8 176 31.2
PH02Gene19565 Phyllostachys edulis HOM05M001241 ORTHO05M001009 1.6e-07 60.8 54 51.9
Misin10G045900 Miscanthus sinensis HOM05M009837 ORTHO05M001009 2.0e-07 60.5 146 33.6
GWHGAZTO091191 Oryza alta HOM05M001241 ORTHO05M001009 2.0e-07 60.5 238 26.5
Sspon.03G0017800-1A Saccharum spontaneum HOM05M001241 ORTHO05M001009 2.0e-07 60.5 182 28.0
Sspon.03G0017800-3C Saccharum spontaneum HOM05M001241 ORTHO05M001009 2.0e-07 60.5 238 26.5
EJB05_56504 Eragrostis curvula HOM05M001241 ORTHO05M001009 2.7e-07 60.1 169 29.6
EJB05_56505 Eragrostis curvula HOM05M001241 ORTHO05M001009 2.7e-07 60.1 169 29.6
GWHGAZTO074300 Oryza alta HOM05M001241 ORTHO05M001009 2.7e-07 60.1 236 26.3
GWHGAZTO091210 Oryza alta HOM05M001241 ORTHO05M001009 2.7e-07 60.1 238 26.5
OsKitaake05g116100 Oryza sativa Kitaake HOM05M001241 ORTHO05M001009 2.7e-07 60.1 231 25.5
Sspon.06G0003890-1P Saccharum spontaneum HOM05M001241 ORTHO05M001009 2.7e-07 60.1 168 26.8
Sspon.06G0003890-2B Saccharum spontaneum HOM05M001241 ORTHO05M001009 2.7e-07 60.1 168 26.8
Sspon.06G0003890-3C Saccharum spontaneum HOM05M001241 ORTHO05M001009 2.7e-07 60.1 168 26.8
Misin18G098700 Miscanthus sinensis HOM05M001241 ORTHO05M001009 3.5e-07 59.7 186 29.0
GWHGAZTO042977 Oryza alta HOM05M001241 ORTHO05M001009 3.5e-07 59.7 120 34.2
Bradi3g33680 Brachypodium distachyon HOM05M001241 ORTHO05M001009 5.9e-07 58.9 168 28.6
GWHGAORA016803 Cenchrus purpureus HOM05M001241 ORTHO05M001009 5.9e-07 58.9 186 26.3
Sobic.003G110932 Sorghum bicolor HOM05M001241 ORTHO05M001009 5.9e-07 58.9 156 31.4
Dexi1B01G0011750 Digitaria exilis HOM05M001241 ORTHO05M001009 7.7e-07 58.5 168 28.6
Misin05G089800 Miscanthus sinensis HOM05M001241 ORTHO05M001009 1.0e-06 58.2 233 24.9
Dexi1B01G0011770 Digitaria exilis HOM05M001241 ORTHO05M001009 1.3e-06 57.8 167 28.7
Sspon.03G0017800-2B Saccharum spontaneum HOM05M001241 ORTHO05M001009 1.3e-06 57.8 236 26.3
Dexi1A01G0012250 Digitaria exilis HOM05M001241 ORTHO05M001009 1.7e-06 57.4 168 28.0
DexiUA01G0009920 Digitaria exilis HOM05M001241 ORTHO05M001009 1.7e-06 57.4 168 28.0
Ot_Chr1_g09267 Oropetium thomaeum HOM05M001241 ORTHO05M001009 1.7e-06 57.4 155 29.7
GWHGAZTO018989 Oryza alta HOM05M001241 ORTHO05M001009 1.7e-06 57.4 209 28.2
OsKitaake08g115100 Oryza sativa Kitaake HOM05M001241 ORTHO05M001009 1.7e-06 57.4 157 27.4
OB07G15790 Oryza brachyantha HOM05M001241 ORTHO05M001009 2.3e-06 57.0 166 30.1
Bradi4g24051 Brachypodium distachyon HOM05M009837 ORTHO05M001009 2.9e-06 56.6 100 33.0
Seita.1G132300 Setaria italica HOM05M001241 ORTHO05M001009 2.9e-06 56.6 181 25.4
Sevir.1G130900 Setaria viridis HOM05M001241 ORTHO05M001009 3.8e-06 56.2 181 25.4
OB07G17140 Oryza brachyantha HOM05M001241 ORTHO05M001009 5.0e-06 55.8 103 35.0
Misin12G102800 Miscanthus sinensis HOM05M001241 ORTHO05M001009 8.6e-06 55.1 166 28.9
Sspon.03G0040660-1C Saccharum spontaneum HOM05M001241 ORTHO05M001009 8.6e-06 55.1 171 26.9
Sspon.03G0040660-1P Saccharum spontaneum HOM05M001241 ORTHO05M001009 8.6e-06 55.1 171 26.9


User provided reference genes

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