Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TraesCS3A03G0145900 Triticum aestivum HOM05M001687 ORTHO05M002092 1.2e-58 228.8 111 100.0
TraesCS6D03G0002000 Triticum aestivum HOM05M001687 ORTHO05M002092 6.0e-58 226.5 111 99.1
TRITD1Av1G199750 Triticum turgidum HOM05M001687 ORTHO05M002092 6.0e-58 226.5 111 99.1
AET4Gv20099500 Aegilops tauschii HOM05M001687 ORTHO05M002092 1.3e-57 225.3 111 98.2
TraesCS4A03G0561600 Triticum aestivum HOM05M001687 ORTHO05M002092 1.5e-56 221.9 111 96.4
TRITD1Av1G020240 Triticum turgidum HOM05M001687 ORTHO05M002092 3.3e-56 220.7 111 95.5
TraesCS3A03G0688200 Triticum aestivum HOM05M001687 ORTHO05M002092 5.6e-56 219.9 111 96.4
TRITD4Av1G162570 Triticum turgidum HOM05M001687 ORTHO05M002092 7.3e-56 219.5 111 95.5
TraesCS4D03G0574400 Triticum aestivum HOM05M001687 ORTHO05M002092 1.3e-55 218.8 111 96.4
Horvu_MOREX_5H01G333000 Hordeum vulgare HOM05M001687 ORTHO05M002092 6.9e-54 213.0 112 93.8
Horvu_MOREX_5H01G588600 Hordeum vulgare HOM05M001687 ORTHO05M002092 9.0e-54 212.6 112 93.8
Horvu_MOREX_4H01G203500 Hordeum vulgare HOM05M001687 ORTHO05M002092 4.5e-53 210.3 112 92.9
Horvu_MOREX_4H01G248800 Hordeum vulgare HOM05M001687 ORTHO05M002092 2.2e-52 208.0 112 92.0
GWHGASIY034485 Secale cereale HOM05M001687 ORTHO05M002092 6.4e-52 206.5 103 96.1
AET7Gv20353400 Aegilops tauschii HOM05M001687 ORTHO05M002092 2.4e-51 204.5 102 97.1
AET6Gv20000800 Aegilops tauschii HOM05M001687 ORTHO05M002092 5.4e-51 203.4 102 96.1
AET5Gv21113200 Aegilops tauschii HOM05M001687 ORTHO05M002092 1.2e-50 202.2 102 95.1
GWHGAZTO071270 Oryza alta HOM05M001687 ORTHO05M002092 6.7e-33 143.3 95 69.5
V3.Lp_chr5_0G12654 Lolium perenne HOM05M001687 ORTHO05M002092 5.7e-32 140.2 102 67.6
GWHGASIY011569 Secale cereale HOM05M001687 ORTHO05M002092 1.3e-31 139.0 102 65.7
TraesCS6B03G0673200 Triticum aestivum HOM05M001687 ORTHO05M002092 2.1e-31 138.3 102 64.7
AET5Gv20096200 Aegilops tauschii HOM05M001687 ORTHO05M002092 2.8e-31 137.9 99 65.7
AET6Gv20284500 Aegilops tauschii HOM05M001687 ORTHO05M002092 2.8e-31 137.9 99 65.7
Horvu_MOREX_2H01G324300 Hordeum vulgare HOM05M001687 ORTHO05M002092 2.8e-31 137.9 102 64.7
TRITD6Bv1G110790 Triticum turgidum HOM05M001687 ORTHO05M002092 6.3e-31 136.7 99 65.7
OsR498G0306355200.01 Oryza sativa ssp. indica HOM05M001687 ORTHO05M002092 1.1e-30 136.0 101 63.4
OsR498G0815540400.01 Oryza sativa ssp. indica HOM05M001687 ORTHO05M002092 1.1e-30 136.0 101 63.4
TraesCS6B03G0653500 Triticum aestivum HOM05M001687 ORTHO05M002092 1.8e-30 135.2 99 64.6
AET3Gv21006700 Aegilops tauschii HOM05M001687 ORTHO05M002092 3.1e-30 134.4 98 64.3
AET5Gv21102700 Aegilops tauschii HOM05M001687 ORTHO05M002092 3.1e-30 134.4 99 65.7
OsR498G1221192400.01 Oryza sativa ssp. indica HOM05M001687 ORTHO05M002092 4.1e-30 134.0 101 62.4
TRIDC6AG031720 Triticum dicoccoides HOM05M001687 ORTHO05M002092 2.5e-27 124.8 99 61.6
V3.Lp_chr4_0G22604 Lolium perenne HOM05M001687 ORTHO05M002092 1.2e-26 122.5 99 65.7
Horvu_MOREX_7H01G292100 Hordeum vulgare HOM05M001687 ORTHO05M002092 1.3e-25 119.0 89 62.9
Pahal.2G184950 Panicum hallii HOM05M001687 ORTHO05M002092 3.3e-24 114.4 101 53.5
Horvu_MOREX_3H01G694900 Hordeum vulgare HOM05M001687 ORTHO05M002092 1.3e-23 112.5 84 64.3
GWHGAZTO074908 Oryza alta HOM05M001687 ORTHO05M002092 1.4e-22 109.0 99 50.5
TRIDC2BG073760 Triticum dicoccoides HOM05M001687 ORTHO05M002092 1.4e-22 109.0 78 66.7
EJB05_56892 Eragrostis curvula HOM05M001687 ORTHO05M002092 2.4e-22 108.2 109 50.5
TraesCS6D03G0381000 Triticum aestivum HOM05M001687 ORTHO05M002092 3.1e-22 107.8 73 68.5
Zm00007a00018673 Zea mays B104 HOM05M001687 ORTHO05M009941 3.1e-22 107.8 101 51.5
GWHGAZTO012055 Oryza alta HOM05M001687 ORTHO05M002092 4.1e-22 107.5 93 50.5
GWHGAZTO014134 Oryza alta HOM05M001687 ORTHO05M002092 4.1e-22 107.5 93 50.5
GWHGAZTO014397 Oryza alta HOM05M001687 ORTHO05M002092 4.1e-22 107.5 93 50.5
GWHGAZTO050857 Oryza alta HOM05M001687 ORTHO05M002092 4.1e-22 107.5 93 50.5
GWHGAZTO082701 Oryza alta HOM05M001687 ORTHO05M002092 4.1e-22 107.5 93 50.5
EJB05_01645 Eragrostis curvula HOM05M001687 ORTHO05M002092 5.3e-22 107.1 99 52.5
GWHGAZTO063497 Oryza alta HOM05M001687 ORTHO05M002092 5.3e-22 107.1 93 50.5
TraesCS7B03G0625100 Triticum aestivum HOM05M001687 ORTHO05M002092 6.9e-22 106.7 78 66.7
GWHGASIY000348 Secale cereale HOM05M001687 ORTHO05M002092 1.5e-21 105.5 72 66.7
EJB05_44647 Eragrostis curvula HOM05M001687 ORTHO05M002092 2.0e-21 105.1 94 52.1
EJB05_47451 Eragrostis curvula HOM05M001687 ORTHO05M002092 2.0e-21 105.1 98 53.1
GWHGAZTO007674 Oryza alta HOM05M001687 ORTHO05M002092 3.4e-21 104.4 93 49.5
GWHGAZTO063294 Oryza alta HOM05M001687 ORTHO05M002092 4.5e-21 104.0 93 49.5
V3.Lp_chr5_0G9728 Lolium perenne HOM05M001687 ORTHO05M002092 1.7e-20 102.1 69 68.1
GWHGASIY028201 Secale cereale HOM05M001687 ORTHO05M002092 6.5e-20 100.1 99 56.6
EJB05_56329 Eragrostis curvula HOM05M001687 ORTHO05M002092 8.5e-20 99.8 93 51.6
Ot_Chr3_gn33787 Oropetium thomaeum HOM05M001687 ORTHO05M002092 1.4e-19 99.0 106 44.3
Sspon.07G0037650-1D Saccharum spontaneum HOM05M001687 ORTHO05M002092 5.5e-19 97.1 98 43.9
Ot_Chr1_gn30919 Oropetium thomaeum HOM05M001687 ORTHO05M002092 7.2e-19 96.7 106 46.2
Sspon.05G0032110-2D Saccharum spontaneum HOM05M001687 ORTHO05M014946 1.6e-18 95.5 98 43.9
EJB05_23947 Eragrostis curvula HOM05M001687 ORTHO05M002092 6.1e-18 93.6 94 45.7
EJB05_42162 Eragrostis curvula HOM05M001687 ORTHO05M002092 6.1e-18 93.6 94 45.7
TRIDC6BG026620 Triticum dicoccoides HOM05M001687 ORTHO05M002092 6.1e-18 93.6 60 70.0
AET4Gv20832300 Aegilops tauschii HOM05M001687 ORTHO05M002092 3.0e-17 91.3 45 97.8
EJB05_47551 Eragrostis curvula HOM05M001687 ORTHO05M002092 1.5e-16 89.0 94 43.6
V3.Lp_chr7_0.1G2126 Lolium perenne HOM05M001687 ORTHO05M002092 7.4e-16 86.7 102 49.0
OB11G21320 Oryza brachyantha HOM05M001687 ORTHO05M002092 2.2e-15 85.1 90 44.4
Sspon.01G0058790-1D Saccharum spontaneum HOM05M000063 ORTHO05M001020 2.6e-13 78.2 96 40.6
Sspon.02G0035420-1B Saccharum spontaneum HOM05M001687 ORTHO05M002092 1.0e-12 76.3 65 49.2
TRIDC2BG017450 Triticum dicoccoides HOM05M001687 ORTHO05M002092 8.5e-12 73.2 53 64.2
AET6Gv20235000 Aegilops tauschii HOM05M001687 ORTHO05M002092 4.2e-11 70.9 55 60.0
Sevir.2G131200 Setaria viridis HOM05M001687 ORTHO05M002092 7.2e-11 70.1 91 40.7
Sevir.4G102900 Setaria viridis HOM05M001687 ORTHO05M002092 2.7e-10 68.2 63 44.4
Horvu_MOREX_6H01G248800 Hordeum vulgare HOM05M001687 ORTHO05M002092 6.1e-10 67.0 54 59.3
Pahal.7G040766 Panicum hallii HOM05M001687 ORTHO05M002092 7.9e-10 66.6 54 51.9
TRIDC6AG035990 Triticum dicoccoides HOM05M001687 ORTHO05M002092 1.0e-09 66.2 51 66.7
GWHGASIY034121 Secale cereale HOM05M001687 ORTHO05M002092 1.4e-09 65.9 48 60.4
EJB05_37153 Eragrostis curvula HOM05M001687 ORTHO05M002092 1.8e-09 65.5 68 44.1
Aco030537 Ananas comosus HOM05M021664 ORTHO05M000598 6.7e-09 63.5 93 36.6
Aco002027 Ananas comosus HOM05M001023 ORTHO05M000484 2.0e-08 62.0 93 28.0
Sevir.4G116800 Setaria viridis HOM05M001687 ORTHO05M002092 2.0e-08 62.0 79 40.5
Pahal.2G181500 Panicum hallii HOM05M001687 ORTHO05M002092 3.3e-08 61.2 65 46.2
Aco028974 Ananas comosus HOM05M021664 ORTHO05M002092 5.7e-08 60.5 79 40.5
Solyc12g038430.3 Solanum lycopersicum HOM05M011556 ORTHO05M000598 7.4e-08 60.1 87 33.3
Pahal.6G101700 Panicum hallii HOM05M001687 ORTHO05M002092 9.7e-08 59.7 65 44.6
OB12G15830 Oryza brachyantha HOM05M001687 ORTHO05M002092 8.2e-07 56.6 61 41.0
Horvu_MOREX_3H01G178100 Hordeum vulgare HOM05M001687 ORTHO05M002092 4.1e-06 54.3 44 59.1
MBI16_g26158_MAGBIO Magnolia biondii HOM05M004829 ORTHO05M006241 5.3e-06 53.9 89 28.1


User provided reference genes

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