Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g068680.2 Solanum lycopersicum HOM05M005417 ORTHO05M006664 2.2e-177 624.8 319 100.0
Potri.009G160500 Populus trichocarpa HOM05M005417 ORTHO05M006664 9.1e-91 337.0 307 59.9
AT5G22340 Arabidopsis thaliana HOM05M005417 ORTHO05M006664 2.7e-87 325.5 317 55.2
Glyma.11G181300 Glycine max HOM05M005417 ORTHO05M006664 3.6e-87 325.1 286 60.5
Ma09_g16870 Musa acuminata HOM05M005417 ORTHO05M006664 6.7e-86 320.9 314 54.5
p5.00_sc00297_p0003 Elaeis guineensis HOM05M005417 ORTHO05M006664 2.2e-84 315.8 304 53.6
DDU059G0382 Dioscorea dumetorum HOM05M005417 ORTHO05M006664 1.8e-83 312.8 304 53.6
ATR0307G012 Amborella trichopoda HOM05M005417 ORTHO05M006664 2.5e-80 302.4 270 57.4
evm.TU.AsparagusV1_05.11.V1.1 Asparagus officinalis HOM05M005417 ORTHO05M006664 1.6e-79 299.7 267 57.3
MBI19_g34002_MAGBIO Magnolia biondii HOM05M005417 ORTHO05M006664 1.0e-78 297.0 281 58.0
Glyma.12G091900 Glycine max HOM05M005417 ORTHO05M006664 1.8e-78 296.2 278 57.9
CALSI_Maker00022194 Calamus simplicifolius HOM05M005417 ORTHO05M006664 6.3e-76 287.7 332 47.3
Zosma01g32930 Zostera marina HOM05M005417 ORTHO05M006664 1.8e-75 286.2 276 54.7
Seita.9G421100 Setaria italica HOM05M005417 ORTHO05M006664 4.5e-74 281.6 298 49.3
Sevir.9G425200 Setaria viridis HOM05M005417 ORTHO05M006664 4.5e-74 281.6 298 49.3
SEGI_27763 Sequoiadendron giganteum HOM05M005417 ORTHO05M006664 7.7e-74 280.8 278 51.1
DDU036G0003 Dioscorea dumetorum HOM05M005417 ORTHO05M006664 1.0e-73 280.4 302 51.0
GWHGAORA055789 Cenchrus purpureus HOM05M005417 ORTHO05M006664 1.3e-73 280.0 300 49.0
Misin01G370100 Miscanthus sinensis HOM05M005417 ORTHO05M006664 2.2e-73 279.3 300 49.0
Sspon.01G0008610-2P Saccharum spontaneum HOM05M005417 ORTHO05M006664 2.9e-73 278.9 300 49.0
Sspon.01G0008610-3D Saccharum spontaneum HOM05M005417 ORTHO05M006664 2.9e-73 278.9 300 49.0
GWHGAORA027361 Cenchrus purpureus HOM05M005417 ORTHO05M006664 3.2e-72 275.4 300 47.7
Sspon.01G0008610-2B Saccharum spontaneum HOM05M005417 ORTHO05M006664 3.2e-72 275.4 296 48.0
GWHGAZTO023774 Oryza alta HOM05M005417 ORTHO05M006664 5.5e-72 274.6 297 50.8
Zm00007a00050809 Zea mays B104 HOM05M005417 ORTHO05M006664 5.5e-72 274.6 300 49.3
Sobic.001G388400 Sorghum bicolor HOM05M005417 ORTHO05M006664 2.1e-71 272.7 300 49.3
Pahal.9G483600 Panicum hallii HOM05M005417 ORTHO05M006664 6.1e-71 271.2 300 47.0
Zm00001eb395560 Zea mays B73 HOM05M005417 ORTHO05M006664 1.0e-70 270.4 301 48.8
Ot_Chr4_g01178 Oropetium thomaeum HOM05M005417 ORTHO05M006664 1.4e-70 270.0 303 49.2
OsKitaake03g160400 Oryza sativa Kitaake HOM05M005417 ORTHO05M006664 1.4e-70 270.0 297 48.8
OsR498G0305846700.01 Oryza sativa ssp. indica HOM05M005417 ORTHO05M006664 1.4e-70 270.0 297 48.8
Os03g0322600 Oryza sativa ssp. japonica HOM05M005417 ORTHO05M006664 1.4e-70 270.0 297 48.8
PH02Gene15942 Phyllostachys edulis HOM05M005417 ORTHO05M006664 1.8e-70 269.6 289 48.8
OB03G25370 Oryza brachyantha HOM05M005417 ORTHO05M006664 5.2e-70 268.1 291 48.5
Aco001708 Ananas comosus HOM05M005417 ORTHO05M006664 7.5e-69 264.2 280 50.0
Sspon.01G0008610-1A Saccharum spontaneum HOM05M005417 ORTHO05M006664 1.4e-67 260.0 299 45.8
HPP92_001703 Vanilla planifolia HOM05M005417 ORTHO05M006664 8.5e-65 250.8 293 48.5
CDE08G0019 Ceratophyllum demersum HOM05M005417 ORTHO05M006664 1.6e-63 246.5 283 47.7
GWHGASIY038947 Secale cereale HOM05M005417 ORTHO05M006664 3.6e-63 245.4 292 45.9
TRITD4Bv1G110430 Triticum turgidum HOM05M005417 ORTHO05M006664 6.1e-63 244.6 292 45.5
TraesCS4A03G0272200 Triticum aestivum HOM05M005417 ORTHO05M006664 8.0e-63 244.2 292 45.5
TRIDC4AG017820 Triticum dicoccoides HOM05M005417 ORTHO05M006664 8.0e-63 244.2 292 45.5
TRITD4Av1G065190 Triticum turgidum HOM05M005417 ORTHO05M006664 8.0e-63 244.2 292 45.5
TraesCS4B03G0496000 Triticum aestivum HOM05M005417 ORTHO05M006664 1.0e-62 243.8 292 45.5
Bradi1g63850 Brachypodium distachyon HOM05M005417 ORTHO05M006664 1.4e-62 243.4 262 46.9
Horvu_MOREX_4H01G278600 Hordeum vulgare HOM05M005417 ORTHO05M006664 5.2e-62 241.5 292 44.9
Zm00007a00039305 Zea mays B104 HOM05M005417 ORTHO05M006664 1.2e-61 240.4 265 47.5
Zm00001eb015340 Zea mays B73 HOM05M005417 ORTHO05M006664 2.0e-61 239.6 204 55.9
TRIDC4BG034830 Triticum dicoccoides HOM05M005417 ORTHO05M006664 2.6e-61 239.2 292 45.2
OB07G18740 Oryza brachyantha HOM05M005417 ORTHO05M006664 4.4e-61 238.4 259 46.7
TraesCS4D03G0440800 Triticum aestivum HOM05M005417 ORTHO05M006664 2.2e-60 236.1 292 44.2
AET4Gv20464000 Aegilops tauschii HOM05M005417 ORTHO05M006664 2.8e-60 235.7 292 44.2
V3.Lp_chr4_0G21518 Lolium perenne HOM05M005417 ORTHO05M006664 5.4e-59 231.5 260 46.5
Zm00001eb285540 Zea mays B73 HOM05M005417 ORTHO05M006664 1.1e-56 223.8 296 43.9
Zm00007a00029055 Zea mays B104 HOM05M005417 ORTHO05M006664 1.1e-56 223.8 293 42.3
EJB05_06842 Eragrostis curvula HOM05M005417 ORTHO05M006664 5.5e-56 221.5 295 45.1
Mapoly0094s0013 Marchantia polymorpha HOM05M005417 ORTHO05M006664 2.4e-51 206.1 269 43.5
Misin02G360300 Miscanthus sinensis HOM05M005417 ORTHO05M006664 5.9e-50 201.4 236 46.6
AagrBONN_evm.TU.Sc2ySwM_228.4159 Anthoceros agrestis HOM05M005417 ORTHO05M006664 1.2e-47 193.7 288 40.6
Spipo29G0007900 Spirodela polyrhiza HOM05M005417 ORTHO05M006664 1.2e-45 187.2 267 41.6
Asa7G01597 Allium sativum HOM05M005417 ORTHO05M006664 1.0e-41 174.1 224 43.8
SMO338G0026 Selaginella moellendorffii HOM05M005417 ORTHO05M006664 3.9e-41 172.2 211 46.4
SMO140G0002 Selaginella moellendorffii HOM05M005417 ORTHO05M006664 4.7e-39 165.2 276 38.0
Pp3c20_23100 Physcomitrium patens HOM05M005417 ORTHO05M006664 1.6e-34 150.2 191 40.8
Sspon.01G0008610-1P Saccharum spontaneum HOM05M005417 ORTHO05M006664 8.6e-25 117.9 167 39.5
Dexi9A01G0037240 Digitaria exilis HOM05M005417 ORTHO05M006664 3.6e-15 85.9 163 35.6
GWHGAZTO073963 Oryza alta HOM05M005417 ORTHO05M006664 1.3e-12 77.4 105 41.0
AagrBONN_evm.TU.Sc2ySwM_228.3020 Anthoceros agrestis HOM05M007136 ORTHO05M009046 2.4e-11 73.2 160 31.2
Dexi9B01G0036030 Digitaria exilis HOM05M005417 ORTHO05M006664 1.3e-09 67.4 114 38.6
Dexi9B01G0036020 Digitaria exilis HOM05M005417 ORTHO05M006664 7.3e-08 61.6 83 39.8
CBR_g22416 Chara braunii HOM05M005417 ORTHO05M006664 2.8e-07 59.7 94 38.3
p5.00_sc00116_p0106 Elaeis guineensis HOM05M007136 ORTHO05M009046 4.0e-06 55.8 150 30.7
Pp3c8_13580 Physcomitrium patens HOM05M007136 ORTHO05M009046 5.3e-06 55.5 167 24.6


User provided reference genes

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