Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g068650.2 Solanum lycopersicum HOM05M003253 ORTHO05M003869 4.2e-253 876.7 426 100.0
Potri.004G197000 Populus trichocarpa HOM05M003253 ORTHO05M003869 2.5e-189 664.8 426 73.2
Potri.009G159900 Populus trichocarpa HOM05M003253 ORTHO05M003869 2.2e-185 651.7 426 72.1
p5.00_sc00012_p0080 Elaeis guineensis HOM05M003253 ORTHO05M003869 2.9e-185 651.4 427 71.9
Glyma.12G091500 Glycine max HOM05M003253 ORTHO05M003869 8.4e-185 649.8 427 71.4
Glyma.11G181700 Glycine max HOM05M003253 ORTHO05M003869 7.1e-184 646.7 429 70.4
ATR0820G255 Amborella trichopoda HOM05M003253 ORTHO05M003869 3.5e-183 644.4 427 70.7
Aco007815 Ananas comosus HOM05M003253 ORTHO05M003869 8.7e-182 639.8 426 70.4
Glyma.12G186400 Glycine max HOM05M003253 ORTHO05M003869 3.3e-181 637.9 424 71.0
Asa5G03197 Allium sativum HOM05M003253 ORTHO05M003869 8.2e-180 633.3 427 67.7
Glyma.13G315100 Glycine max HOM05M003253 ORTHO05M003869 4.5e-178 627.5 424 69.6
evm.TU.AsparagusV1_02.823.V1.1 Asparagus officinalis HOM05M003253 ORTHO05M003869 1.0e-177 626.3 427 69.1
Ma02_g08690 Musa acuminata HOM05M003253 ORTHO05M003869 1.3e-177 625.9 423 69.5
DDU879G0026 Dioscorea dumetorum HOM05M003253 ORTHO05M003869 1.7e-177 625.5 427 67.2
DDU892G0006 Dioscorea dumetorum HOM05M003253 ORTHO05M003869 1.7e-177 625.5 427 67.2
AT5G22350 Arabidopsis thaliana HOM05M003253 ORTHO05M003869 3.8e-177 624.4 431 68.2
Spipo7G0036600 Spirodela polyrhiza HOM05M003253 ORTHO05M003869 3.2e-176 621.3 428 68.0
HPP92_023061 Vanilla planifolia HOM05M003253 ORTHO05M003869 1.2e-175 619.4 427 66.3
evm.TU.AsparagusV1_09.88.V1.1 Asparagus officinalis HOM05M003253 ORTHO05M003869 1.6e-175 619.0 427 69.6
Zosma02g01860 Zostera marina HOM05M003253 ORTHO05M003869 1.7e-169 599.0 429 64.6
GWHGAZTO018872 Oryza alta HOM05M003253 ORTHO05M003869 2.9e-169 598.2 433 65.1
Misin07G349700 Miscanthus sinensis HOM05M003253 ORTHO05M003869 5.0e-169 597.4 434 66.4
Misin08G155100 Miscanthus sinensis HOM05M003253 ORTHO05M003869 1.4e-168 595.9 434 66.1
OsKitaake02g196400 Oryza sativa Kitaake HOM05M003253 ORTHO05M003869 9.4e-168 593.2 435 65.1
OsR498G0204007300.01 Oryza sativa ssp. indica HOM05M003253 ORTHO05M003869 9.4e-168 593.2 435 65.1
Zosma05g02700 Zostera marina HOM05M003253 ORTHO05M003869 9.4e-168 593.2 427 65.6
Sspon.04G0025710-3D Saccharum spontaneum HOM05M003253 ORTHO05M003869 2.1e-167 592.0 435 65.1
Sobic.004G167200 Sorghum bicolor HOM05M003253 ORTHO05M003869 7.9e-167 590.1 433 64.9
Sevir.1G185300 Setaria viridis HOM05M003253 ORTHO05M003869 1.4e-166 589.3 433 66.1
Seita.1G182200 Setaria italica HOM05M003253 ORTHO05M003869 1.8e-166 589.0 433 66.1
GWHGAORA059325 Cenchrus purpureus HOM05M003253 ORTHO05M003869 6.7e-166 587.0 432 64.8
OB02G27070 Oryza brachyantha HOM05M003253 ORTHO05M003869 1.5e-165 585.9 430 64.2
CDE06G2666 Ceratophyllum demersum HOM05M003253 ORTHO05M003869 3.3e-165 584.7 427 65.8
GWHGAORA023895 Cenchrus purpureus HOM05M003253 ORTHO05M003869 5.7e-165 583.9 432 64.4
Pahal.1G256100 Panicum hallii HOM05M003253 ORTHO05M003869 5.7e-165 583.9 433 65.4
EJB05_21434 Eragrostis curvula HOM05M003253 ORTHO05M003869 8.2e-164 580.1 432 63.2
SEGI_37149 Sequoiadendron giganteum HOM05M003253 ORTHO05M003869 6.9e-163 577.0 427 63.0
EJB05_21443 Eragrostis curvula HOM05M003253 ORTHO05M003869 1.2e-162 576.2 432 63.0
V3.Lp_chr6_0G10700 Lolium perenne HOM05M003253 ORTHO05M003869 7.7e-162 573.5 427 63.2
Pahal.7G140900 Panicum hallii HOM05M003253 ORTHO05M003869 7.7e-162 573.5 427 62.5
Ot_Chr1_g11365 Oropetium thomaeum HOM05M003253 ORTHO05M003869 1.0e-161 573.2 433 62.1
GWHGASIY008748 Secale cereale HOM05M003253 ORTHO05M003869 8.8e-158 560.1 426 60.8
Glyma.03G198300 Glycine max HOM05M003253 ORTHO05M003869 1.1e-157 559.7 409 66.0
TraesCS2A03G0737300 Triticum aestivum HOM05M003253 ORTHO05M003869 3.3e-157 558.1 426 60.8
TraesCS2D03G0680500 Triticum aestivum HOM05M003253 ORTHO05M003869 4.4e-157 557.8 426 60.8
Horvu_MOREX_2H01G439200 Hordeum vulgare HOM05M003253 ORTHO05M003869 7.4e-157 557.0 425 60.7
TraesCS2B03G0814100 Triticum aestivum HOM05M003253 ORTHO05M003869 9.7e-157 556.6 426 60.3
Dexi1B01G0014920 Digitaria exilis HOM05M003253 ORTHO05M003869 1.7e-156 555.8 406 67.0
TRITD2Bv1G148430 Triticum turgidum HOM05M003253 ORTHO05M003869 2.8e-156 555.1 426 60.3
Sevir.7G099900 Setaria viridis HOM05M003253 ORTHO05M003869 8.2e-156 553.5 427 60.7
Dexi1A01G0016060 Digitaria exilis HOM05M003253 ORTHO05M003869 1.1e-155 553.1 405 66.9
TRITD2Av1G179940 Triticum turgidum HOM05M003253 ORTHO05M003869 4.1e-155 551.2 433 59.8
Ot_Chr6_g08660 Oropetium thomaeum HOM05M003253 ORTHO05M003869 1.6e-154 549.3 425 61.2
GWHGAZTO079145 Oryza alta HOM05M003253 ORTHO05M003869 1.6e-154 549.3 419 62.1
PH02Gene06198 Phyllostachys edulis HOM05M003253 ORTHO05M003869 1.6e-154 549.3 400 63.5
EJB05_52760 Eragrostis curvula HOM05M003253 ORTHO05M003869 2.0e-154 548.9 427 61.1
EJB05_38097 Eragrostis curvula HOM05M003253 ORTHO05M003869 1.7e-153 545.8 427 60.9
OsKitaake04g121500 Oryza sativa Kitaake HOM05M003253 ORTHO05M003869 7.2e-152 540.4 414 61.8
V3.Lp_chr2_0G15350 Lolium perenne HOM05M003253 ORTHO05M003869 6.1e-151 537.3 424 59.9
TRIDC2AG042790 Triticum dicoccoides HOM05M003253 ORTHO05M003869 1.2e-146 523.1 383 62.1
TRIDC2BG045860 Triticum dicoccoides HOM05M003253 ORTHO05M003869 1.3e-145 519.6 382 61.8
AagrBONN_evm.TU.Sc2ySwM_369.385 Anthoceros agrestis HOM05M003253 ORTHO05M003869 7.2e-144 513.8 431 56.4
Pp3c23_3410 Physcomitrium patens HOM05M003253 ORTHO05M003869 2.3e-142 508.8 444 55.2
Mapoly0038s0050 Marchantia polymorpha HOM05M003253 ORTHO05M003869 2.6e-141 505.4 442 53.4
AT5G06180 Arabidopsis thaliana HOM05M003253 ORTHO05M003869 2.8e-140 501.9 412 58.3
SMO196G0287 Selaginella moellendorffii HOM05M003253 ORTHO05M003869 3.7e-140 501.5 427 56.9
AET2Gv20670200 Aegilops tauschii HOM05M003253 ORTHO05M003869 7.7e-138 493.8 362 62.2
Sspon.04G0025710-2C Saccharum spontaneum HOM05M003253 ORTHO05M003869 1.1e-136 490.0 435 57.0
OB04G19180 Oryza brachyantha HOM05M003253 ORTHO05M003869 1.2e-135 486.5 427 57.4
PH02Gene49860 Phyllostachys edulis HOM05M003253 ORTHO05M003869 2.8e-135 485.3 364 64.3
GWHGAORA023067 Cenchrus purpureus HOM05M003253 ORTHO05M003869 1.8e-134 482.6 424 56.4
GWHGAORA061599 Cenchrus purpureus HOM05M003253 ORTHO05M003869 5.2e-134 481.1 424 56.1
Sspon.04G0025710-1B Saccharum spontaneum HOM05M003253 ORTHO05M003869 6.3e-132 474.2 433 55.7
CBR_g33922 Chara braunii HOM05M003253 ORTHO05M003869 3.3e-128 461.8 427 52.9
Misin12G072000 Miscanthus sinensis HOM05M003253 ORTHO05M003869 3.4e-125 451.8 290 70.0
Bradi3g45040 Brachypodium distachyon HOM05M003253 ORTHO05M003869 7.5e-125 450.7 283 70.0
Zm00007a00005042 Zea mays B104 HOM05M003253 ORTHO05M003869 1.1e-120 436.8 283 69.6
GWHGAORA059615 Cenchrus purpureus HOM05M003253 ORTHO05M003869 1.8e-118 429.5 420 50.5
Sobic.006G072501 Sorghum bicolor HOM05M003253 ORTHO05M003869 2.0e-117 426.0 361 58.7
Dexi7B01G0006910 Digitaria exilis HOM05M003253 ORTHO05M003869 3.9e-113 411.8 424 49.1
Dexi7A01G0006010 Digitaria exilis HOM05M003253 ORTHO05M003869 5.0e-113 411.4 424 49.5
Zjn_sc00020.1.g01710.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM05M003253 ORTHO05M003869 1.4e-110 403.3 432 49.1
Misin11G066100 Miscanthus sinensis HOM05M003253 ORTHO05M003869 4.4e-109 398.3 278 64.7
Bradi5g09491 Brachypodium distachyon HOM05M003253 ORTHO05M003869 1.4e-102 376.7 312 57.7
Seita.7G092300 Setaria italica HOM05M003253 ORTHO05M003869 9.2e-99 364.0 307 58.3
Dexi1B01G0015170 Digitaria exilis HOM05M003253 ORTHO05M003869 1.2e-98 363.6 407 48.6
Pp3c20_13230 Physcomitrium patens HOM05M003253 ORTHO05M003869 4.3e-96 355.1 356 50.0
Sspon.05G0025980-2D Saccharum spontaneum HOM05M003253 ORTHO05M003869 1.6e-95 353.2 330 56.4
PH02Gene49947 Phyllostachys edulis HOM05M003253 ORTHO05M003869 5.8e-93 344.7 273 62.3
Os02g0535700 Oryza sativa ssp. japonica HOM05M003253 ORTHO05M003869 8.4e-92 340.9 282 61.0
Solyc09g010320.3 Solanum lycopersicum HOM05M003253 ORTHO05M003869 1.4e-91 340.1 330 53.3
Potri.016G075500 Populus trichocarpa HOM05M003253 ORTHO05M003869 3.0e-89 332.4 245 66.1
CDE07G1160 Ceratophyllum demersum HOM05M003253 ORTHO05M003869 1.0e-81 307.4 279 57.7
GWHGAZTO070479 Oryza alta HOM05M003253 ORTHO05M003869 8.4e-76 287.7 401 42.1
SEGI_06630 Sequoiadendron giganteum HOM05M003253 ORTHO05M003869 1.8e-62 243.4 160 67.5
Os04g0414000 Oryza sativa ssp. japonica HOM05M003253 ORTHO05M003869 2.2e-60 236.5 210 55.2
Dexi1A01G0016270 Digitaria exilis HOM05M003253 ORTHO05M003869 3.7e-55 219.2 213 52.6
GWHGAZTO029467 Oryza alta HOM05M003253 ORTHO05M003869 5.9e-53 211.8 151 65.6
Sspon.05G0025980-1B Saccharum spontaneum HOM05M003253 ORTHO05M003869 9.4e-51 204.5 144 62.5
Glyma.19G196202 Glycine max HOM05M003253 ORTHO05M003869 5.3e-46 188.7 113 76.1
PH02Gene16847 Phyllostachys edulis HOM05M003253 ORTHO05M003869 1.2e-42 177.6 114 69.3
GWHGAORA050165 Cenchrus purpureus HOM05M003253 ORTHO05M003869 3.9e-41 172.6 107 69.2
Zm00001eb181500 Zea mays B73 HOM05M003253 ORTHO05M003869 3.5e-37 159.5 164 52.4
PH02Gene17753 Phyllostachys edulis HOM05M003253 ORTHO05M003869 1.9e-35 153.7 89 75.3
PH02Gene30784 Phyllostachys edulis HOM05M003253 ORTHO05M003869 2.5e-35 153.3 222 40.1
OsR498G0408532700.01 Oryza sativa ssp. indica HOM05M003253 ORTHO05M003869 2.7e-34 149.8 119 58.8
Zm00007a00005040 Zea mays B104 HOM05M003253 ORTHO05M003869 6.7e-33 145.2 152 52.0
Glyma.04G115600 Glycine max HOM05M003253 ORTHO05M003869 9.1e-30 134.8 75 76.0
Dexi1A01G0016280 Digitaria exilis HOM05M003253 ORTHO05M003869 5.0e-20 102.4 129 47.3
CALSI_Maker00024649 Calamus simplicifolius HOM05M003253 ORTHO05M003869 4.4e-16 89.4 64 73.4
MCO13G096 Micromonas commoda HOM05M003253 ORTHO05M003869 3.1e-14 83.2 285 28.1
Zm00001eb140760 Zea mays B73 HOM05M007923 ORTHO05M016403 1.7e-12 77.4 39 84.6
Zm00001eb349350 Zea mays B73 HOM05M003498 ORTHO05M016403 1.7e-12 77.4 39 84.6
PH02Gene00012 Phyllostachys edulis HOM05M000043 ORTHO05M000020 3.4e-08 63.2 31 77.4
Zm00007a00009677 Zea mays B104 HOM05M006120 ORTHO05M007526 5.8e-08 62.4 32 84.4
Zm00007a00035798 Zea mays B104 HOM05M003498 ORTHO05M003869 9.8e-08 61.6 69 47.8
Zm00007a00008323 Zea mays B104 HOM05M016148 ORTHO05M018139 6.4e-07 58.9 33 75.8
Zjn_sc00006.1.g03780.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM05M002506 ORTHO05M003869 6.4e-07 58.9 56 53.6
Zm00007a00026638 Zea mays B104 HOM05M004343 ORTHO05M016403 8.3e-07 58.5 31 80.6
Zm00007a00029355 Zea mays B104 HOM05M003498 ORTHO05M016403 8.3e-07 58.5 32 75.0


User provided reference genes

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