Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc10g037890.3 Solanum lycopersicum HOM05M006423 ORTHO05M007997 1.8e-104 381.7 183 100.0
Glyma.12G152700 Glycine max HOM05M006423 ORTHO05M007997 1.9e-80 302.0 182 78.0
Potri.002G138600 Populus trichocarpa HOM05M006423 ORTHO05M007997 3.2e-80 301.2 183 76.0
CALSI_Maker00003208 Calamus simplicifolius HOM05M006423 ORTHO05M007997 2.7e-79 298.1 183 76.0
p5.00_sc00002_p0163 Elaeis guineensis HOM05M006423 ORTHO05M007997 4.6e-79 297.4 179 77.1
Aco012872 Ananas comosus HOM05M006423 ORTHO05M007997 1.6e-76 288.9 183 74.3
evm.TU.AsparagusV1_08.378.V1.1 Asparagus officinalis HOM05M006423 ORTHO05M007997 5.2e-75 283.9 180 74.4
Glyma.06G240000 Glycine max HOM05M006423 ORTHO05M007997 8.9e-75 283.1 182 73.6
Ma04_g35420 Musa acuminata HOM05M006423 ORTHO05M007997 2.9e-73 278.1 178 74.2
DDU643G0097 Dioscorea dumetorum HOM05M006423 ORTHO05M007997 4.1e-72 274.2 181 70.2
DDU746G0009 Dioscorea dumetorum HOM05M006423 ORTHO05M007997 4.1e-72 274.2 181 70.2
ATR0665G564 Amborella trichopoda HOM05M006423 ORTHO05M007997 4.6e-71 270.8 183 69.9
Asa6G03167 Allium sativum HOM05M006423 ORTHO05M007997 6.0e-71 270.4 182 68.7
AT2G44760 Arabidopsis thaliana HOM05M006423 ORTHO05M007997 7.8e-71 270.0 183 70.5
Spipo5G0050800 Spirodela polyrhiza HOM05M006423 ORTHO05M007997 3.9e-70 267.7 178 69.7
Ot_Chr6_g12275 Oropetium thomaeum HOM05M006423 ORTHO05M007997 6.6e-70 266.9 183 68.3
Bradi5g17407 Brachypodium distachyon HOM05M006423 ORTHO05M007997 8.6e-70 266.5 175 70.9
EJB05_38504 Eragrostis curvula HOM05M006423 ORTHO05M007997 1.1e-69 266.2 181 67.4
Sspon.05G0005990-1P Saccharum spontaneum HOM05M006423 ORTHO05M007997 2.5e-69 265.0 181 67.4
Misin12G168600 Miscanthus sinensis HOM05M006423 ORTHO05M007997 5.6e-69 263.8 181 67.4
Seita.2G157600 Setaria italica HOM05M006423 ORTHO05M007997 5.6e-69 263.8 181 66.9
Sevir.7G197600 Setaria viridis HOM05M006423 ORTHO05M007997 5.6e-69 263.8 181 66.9
GWHGAZTO080399 Oryza alta HOM05M006423 ORTHO05M007997 1.2e-68 262.7 179 67.0
Sspon.05G0005990-1A Saccharum spontaneum HOM05M006423 ORTHO05M007997 3.6e-68 261.2 181 66.9
Sobic.006G166500 Sorghum bicolor HOM05M006423 ORTHO05M007997 4.7e-68 260.8 176 68.2
TraesCS2A03G0946200 Triticum aestivum HOM05M006423 ORTHO05M007997 4.7e-68 260.8 181 66.3
TRIDC2AG056710 Triticum dicoccoides HOM05M006423 ORTHO05M007997 4.7e-68 260.8 181 66.3
Misin11G162200 Miscanthus sinensis HOM05M006423 ORTHO05M007997 6.2e-68 260.4 181 66.3
Pahal.7G240100 Panicum hallii HOM05M006423 ORTHO05M007997 6.2e-68 260.4 181 66.3
PH02Gene01999 Phyllostachys edulis HOM05M006423 ORTHO05M007997 6.2e-68 260.4 181 67.4
Zm00001eb427880 Zea mays B73 HOM05M006423 ORTHO05M007997 6.2e-68 260.4 181 66.3
Zm00007a00028471 Zea mays B104 HOM05M006423 ORTHO05M007997 6.2e-68 260.4 181 66.3
AET2Gv20876200 Aegilops tauschii HOM05M006423 ORTHO05M007997 1.4e-67 259.2 181 65.7
OB04G27530 Oryza brachyantha HOM05M006423 ORTHO05M007997 1.8e-67 258.8 181 65.7
OsKitaake04g213700 Oryza sativa Kitaake HOM05M006423 ORTHO05M007997 1.8e-67 258.8 179 65.9
OsR498G0409015800.01 Oryza sativa ssp. indica HOM05M006423 ORTHO05M007997 1.8e-67 258.8 179 65.9
Os04g0545200 Oryza sativa ssp. japonica HOM05M006423 ORTHO05M007997 1.8e-67 258.8 179 65.9
Sspon.05G0005990-2B Saccharum spontaneum HOM05M006423 ORTHO05M007997 5.2e-67 257.3 174 68.4
Horvu_MOREX_2H01G569000 Hordeum vulgare HOM05M006423 ORTHO05M007997 6.8e-67 256.9 181 64.1
V3.Lp_chr2_0G18668 Lolium perenne HOM05M006423 ORTHO05M007997 1.3e-65 252.7 183 63.9
GWHGAZTO030742 Oryza alta HOM05M006423 ORTHO05M007997 1.3e-65 252.7 181 64.6
TRITD2Av1G231930 Triticum turgidum HOM05M006423 ORTHO05M007997 1.7e-65 252.3 175 66.9
CDE06G1994 Ceratophyllum demersum HOM05M006423 ORTHO05M007997 2.2e-65 251.9 163 71.8
Dexi7B01G0015230 Digitaria exilis HOM05M006423 ORTHO05M007997 3.8e-65 251.1 192 62.5
TraesCS2D03G0887600 Triticum aestivum HOM05M006423 ORTHO05M007997 6.4e-65 250.4 175 66.3
TRIDC2BG059570 Triticum dicoccoides HOM05M006423 ORTHO05M007997 6.4e-65 250.4 176 65.3
Dexi7A01G0014350 Digitaria exilis HOM05M006423 ORTHO05M007997 8.4e-65 250.0 192 62.0
GWHGASIY010161 Secale cereale HOM05M006423 ORTHO05M007997 1.4e-64 249.2 174 66.7
TraesCS2B03G1044500 Triticum aestivum HOM05M006423 ORTHO05M007997 1.4e-64 249.2 175 65.7
TRITD2Bv1G193820 Triticum turgidum HOM05M006423 ORTHO05M007997 1.4e-64 249.2 175 65.7
HPP92_012970 Vanilla planifolia HOM05M006423 ORTHO05M007997 3.0e-62 241.5 181 64.6
Zjn_sc00004.1.g06270.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM05M006423 ORTHO05M007997 6.6e-62 240.4 165 67.3
GWHGAORA062509 Cenchrus purpureus HOM05M006423 ORTHO05M007997 2.1e-55 218.8 176 59.1
Zosma01g21780 Zostera marina HOM05M006423 ORTHO05M007997 5.1e-54 214.2 184 58.7
SEGI_37248 Sequoiadendron giganteum HOM05M006423 ORTHO05M007997 1.4e-51 206.1 179 53.1
Pp3c5_3810 Physcomitrium patens HOM05M006423 ORTHO05M007997 1.5e-37 159.5 180 46.1
AagrBONN_evm.TU.Sc2ySwM_117.1538 Anthoceros agrestis HOM05M006423 ORTHO05M007997 2.7e-31 138.7 182 38.5
Mapoly0089s0048 Marchantia polymorpha HOM05M006423 ORTHO05M007997 1.0e-30 136.7 180 42.2
Zm00007a00006215 Zea mays B104 HOM05M006423 ORTHO05M007997 1.3e-22 109.8 75 68.0
SMO340G0133 Selaginella moellendorffii HOM05M001720 ORTHO05M007997 9.1e-19 97.1 157 33.8
CBR_g48168 Chara braunii HOM05M006423 ORTHO05M007997 3.8e-17 91.7 156 34.0
CDE06G0422 Ceratophyllum demersum HOM05M006423 ORTHO05M007997 1.9e-16 89.4 58 65.5
Cre16.g684900 Chlamydomonas reinhardtii HOM05M006423 ORTHO05M007997 3.2e-08 62.0 233 23.6


User provided reference genes

Program Settings