Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g065300.4 Solanum lycopersicum HOM05M006981 ORTHO05M008992 8.0e-104 379.8 210 100.0
Glyma.03G155200 Glycine max HOM05M006981 ORTHO05M008992 1.9e-41 172.6 202 49.5
MBI04_g20822_MAGBIO Magnolia biondii HOM05M006981 ORTHO05M008992 2.2e-37 159.1 160 51.9
TraesCS4B03G0084300 Triticum aestivum HOM05M006981 ORTHO05M008992 1.9e-36 156.0 151 53.6
Sobic.001G124800 Sorghum bicolor HOM05M006981 ORTHO05M008992 4.2e-36 154.8 96 72.9
TRIDC4BG006240 Triticum dicoccoides HOM05M006981 ORTHO05M008992 4.2e-36 154.8 109 67.0
Sspon.01G0025870-3D Saccharum spontaneum HOM05M006981 ORTHO05M008992 5.5e-36 154.5 96 72.9
TRIDC4AG042730 Triticum dicoccoides HOM05M006981 ORTHO05M008992 7.2e-36 154.1 94 74.5
TRITD4Bv1G010940 Triticum turgidum HOM05M006981 ORTHO05M008992 7.2e-36 154.1 151 53.6
PH02Gene18242 Phyllostachys edulis HOM05M006981 ORTHO05M008992 9.4e-36 153.7 97 71.1
GWHGASIY018299 Secale cereale HOM05M006981 ORTHO05M008992 9.4e-36 153.7 106 67.9
AET4Gv20071000 Aegilops tauschii HOM05M006981 ORTHO05M008992 1.2e-35 153.3 116 63.8
Aco018445 Ananas comosus HOM05M006981 ORTHO05M008992 1.2e-35 153.3 137 54.7
Horvu_MOREX_4H01G037000 Hordeum vulgare HOM05M006981 ORTHO05M008992 1.2e-35 153.3 116 63.8
Misin02G102800 Miscanthus sinensis HOM05M006981 ORTHO05M008992 1.2e-35 153.3 96 72.9
TraesCS4D03G0059700 Triticum aestivum HOM05M006981 ORTHO05M008992 1.2e-35 153.3 116 63.8
TRITD4Av1G195220 Triticum turgidum HOM05M006981 ORTHO05M008992 1.2e-35 153.3 116 63.8
Potri.005G210700 Populus trichocarpa HOM05M006981 ORTHO05M008992 1.6e-35 152.9 204 46.1
Sspon.01G0025870-2C Saccharum spontaneum HOM05M006981 ORTHO05M008992 1.6e-35 152.9 96 72.9
Ma04_g17150 Musa acuminata HOM05M006981 ORTHO05M008992 2.7e-35 152.1 145 55.9
Spipo24G0016100 Spirodela polyrhiza HOM05M006981 ORTHO05M008992 2.7e-35 152.1 109 64.2
Dexi9A01G0012170 Digitaria exilis HOM05M006981 ORTHO05M008992 4.6e-35 151.4 119 61.3
TraesCS4A03G0710500 Triticum aestivum HOM05M006981 ORTHO05M008992 4.6e-35 151.4 116 62.9
Zm00007a00048351 Zea mays B104 HOM05M006981 ORTHO05M008992 6.1e-35 151.0 96 71.9
EJB05_05003 Eragrostis curvula HOM05M006981 ORTHO05M000003 7.9e-35 150.6 94 72.3
PH02Gene30407 Phyllostachys edulis HOM05M006981 ORTHO05M008992 7.9e-35 150.6 139 54.7
GWHGAZTO026172 Oryza alta HOM05M006981 ORTHO05M008992 1.0e-34 150.2 113 64.6
Dexi9B01G0016210 Digitaria exilis HOM05M006981 ORTHO05M008992 1.4e-34 149.8 119 61.3
OsKitaake03g304300 Oryza sativa Kitaake HOM05M006981 ORTHO05M008992 1.4e-34 149.8 94 75.5
OsR498G0306877500.01 Oryza sativa ssp. indica HOM05M006981 ORTHO05M008992 1.4e-34 149.8 94 75.5
Zm00001eb054110 Zea mays B73 HOM05M006981 ORTHO05M008992 1.4e-34 149.8 96 70.8
Bradi1g11610 Brachypodium distachyon HOM05M006981 ORTHO05M008992 3.0e-34 148.7 115 61.7
V3.Lp_chr4_0G7424 Lolium perenne HOM05M006981 ORTHO05M008992 3.0e-34 148.7 107 65.4
GWHGAZTO076116 Oryza alta HOM05M006981 ORTHO05M008992 3.9e-34 148.3 94 74.5
AT4G02725 Arabidopsis thaliana HOM05M006981 ORTHO05M008992 5.1e-34 147.9 130 60.8
Sevir.9G125900 Setaria viridis HOM05M006981 ORTHO05M008992 1.1e-33 146.7 105 66.7
DDU273G0389 Dioscorea dumetorum HOM05M006981 ORTHO05M008992 1.5e-33 146.4 160 51.9
DDU893G0013 Dioscorea dumetorum HOM05M006981 ORTHO05M008992 1.5e-33 146.4 160 51.9
Pahal.9G125100 Panicum hallii HOM05M006981 ORTHO05M008992 2.0e-33 146.0 102 66.7
Seita.9G126900 Setaria italica HOM05M006981 ORTHO05M008992 2.0e-33 146.0 164 51.2
Ot_Chr4_g08092 Oropetium thomaeum HOM05M006981 ORTHO05M008992 5.7e-33 144.4 96 66.7
HPP92_009591 Vanilla planifolia HOM05M002413 ORTHO05M002580 7.4e-33 144.1 159 50.9
Asa0G03926 Allium sativum HOM05M006981 ORTHO05M008992 8.2e-32 140.6 101 65.3
Os03g0701300 Oryza sativa ssp. japonica HOM05M006981 ORTHO05M008992 1.8e-31 139.4 87 75.9
GWHGAORA051317 Cenchrus purpureus HOM05M006981 ORTHO05M008992 5.3e-31 137.9 97 67.0
Sspon.01G0047260-1B Saccharum spontaneum HOM05M006981 ORTHO05M008992 1.3e-29 133.3 81 74.1
OB03G37960 Oryza brachyantha HOM05M006981 ORTHO05M008992 2.9e-29 132.1 84 73.8
CDE02G2742 Ceratophyllum demersum HOM05M007251 ORTHO05M009168 1.2e-27 126.7 94 63.8
Pp3c26_14500 Physcomitrium patens HOM05M006981 ORTHO05M008992 1.8e-26 122.9 197 37.6
GWHGAORA051330 Cenchrus purpureus HOM05M006981 ORTHO05M008992 3.0e-26 122.1 95 63.2
ATR0332G065 Amborella trichopoda HOM05M006981 ORTHO05M008992 3.9e-26 121.7 99 57.6
SMO340G0322 Selaginella moellendorffii HOM05M000108 ORTHO05M003572 3.9e-26 121.7 134 49.3
SMO180G0003 Selaginella moellendorffii HOM05M006981 ORTHO05M008992 6.7e-26 120.9 85 63.5
Zosma05g32300 Zostera marina HOM05M006981 ORTHO05M008992 1.5e-25 119.8 85 67.1
Mapoly0004s0031 Marchantia polymorpha HOM05M006981 ORTHO05M008992 4.1e-23 111.7 90 55.6
AagrBONN_evm.TU.Sc2ySwM_362.2722 Anthoceros agrestis HOM05M006981 ORTHO05M008992 1.4e-20 103.2 99 48.5
Sspon.01G0025870-1A Saccharum spontaneum HOM05M006981 ORTHO05M008992 4.2e-20 101.7 96 53.1
Sspon.01G0047260-2D Saccharum spontaneum HOM05M006981 ORTHO05M008992 1.2e-11 73.6 37 81.1
Misin01G114900 Miscanthus sinensis HOM05M006981 ORTHO05M008992 2.2e-08 62.8 66 53.0
Zjn_sc00013.1.g01220.1.am.mk Zoysia japonica ssp. nagirizaki HOM05M009196 ORTHO05M011344 3.7e-08 62.0 33 78.8
TraesCS7B03G0969600 Triticum aestivum HOM05M006981 ORTHO05M008992 5.9e-06 54.7 35 68.6
TRIDC5AG031670 Triticum dicoccoides HOM05M006981 ORTHO05M008992 5.9e-06 54.7 35 68.6
TRIDC7BG057470 Triticum dicoccoides HOM05M006981 ORTHO05M008992 5.9e-06 54.7 35 68.6
TRITD7Bv1G193340 Triticum turgidum HOM05M006981 ORTHO05M008992 5.9e-06 54.7 35 68.6


User provided reference genes

Program Settings