Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g059670.4 Solanum lycopersicum HOM05M000561 ORTHO05M003873 0.0e+00 1144.4 576 100.0
Solyc04g007450.4 Solanum lycopersicum HOM05M000561 ORTHO05M003873 1.5e-213 745.7 593 66.6
Potri.010G119700 Populus trichocarpa HOM05M000561 ORTHO05M003873 8.2e-191 670.2 526 64.1
Potri.008G124400 Populus trichocarpa HOM05M000561 ORTHO05M003873 1.6e-186 656.0 526 63.7
AT1G15060 Arabidopsis thaliana HOM05M000561 ORTHO05M003873 8.7e-185 650.2 522 61.7
Glyma.20G120900 Glycine max HOM05M000561 ORTHO05M003873 1.0e-180 636.7 534 59.7
ATR0681G102 Amborella trichopoda HOM05M000561 ORTHO05M003873 5.1e-169 597.8 528 59.8
evm.TU.AsparagusV1_01.3246.V1.1 Asparagus officinalis HOM05M000561 ORTHO05M003873 1.7e-167 592.8 525 56.6
p5.00_sc00375_p0007 Elaeis guineensis HOM05M000561 ORTHO05M003873 1.3e-164 583.2 533 55.2
Ma09_g21970 Musa acuminata HOM05M000561 ORTHO05M003873 2.3e-161 572.4 518 56.9
CDE04G0339 Ceratophyllum demersum HOM05M000561 ORTHO05M003873 2.9e-156 555.4 522 54.0
OsR498G0101804100.01 Oryza sativa ssp. indica HOM05M000561 ORTHO05M003873 3.8e-156 555.1 529 53.7
OsKitaake01g287600 Oryza sativa Kitaake HOM05M000561 ORTHO05M003873 1.5e-155 553.1 529 53.5
Os01g0692600 Oryza sativa ssp. japonica HOM05M000561 ORTHO05M003873 1.5e-155 553.1 529 53.5
EJB05_17350 Eragrostis curvula HOM05M000561 ORTHO05M003873 8.0e-154 547.4 519 53.0
Bradi2g47140 Brachypodium distachyon HOM05M000561 ORTHO05M003873 2.3e-153 545.8 520 52.9
Seita.5G280000 Setaria italica HOM05M000561 ORTHO05M003873 4.0e-153 545.0 524 53.4
HPP92_021341 Vanilla planifolia HOM05M000561 ORTHO05M003873 4.0e-153 545.0 524 54.2
Sobic.003G264800 Sorghum bicolor HOM05M000561 ORTHO05M003873 8.8e-153 543.9 525 52.2
PH02Gene45301 Phyllostachys edulis HOM05M000561 ORTHO05M003873 1.5e-152 543.1 519 52.6
Horvu_MOREX_3H01G380300 Hordeum vulgare HOM05M000561 ORTHO05M003873 2.0e-152 542.7 526 52.9
Pahal.5G196900 Panicum hallii HOM05M000561 ORTHO05M003873 5.7e-152 541.2 530 52.5
Zosma06g06670 Zostera marina HOM05M000561 ORTHO05M003873 5.7e-152 541.2 518 52.9
Sevir.5G282400 Setaria viridis HOM05M000561 ORTHO05M003873 1.8e-150 536.2 538 52.0
GWHGASIY015680 Secale cereale HOM05M000561 ORTHO05M003873 4.1e-150 535.0 530 51.9
TraesCS3D03G0607700 Triticum aestivum HOM05M000561 ORTHO05M003873 5.3e-150 534.6 530 51.9
AET3Gv20632100 Aegilops tauschii HOM05M000561 ORTHO05M003873 1.0e-148 530.4 520 51.3
EJB05_55255 Eragrostis curvula HOM05M000561 ORTHO05M003873 2.9e-148 528.9 550 50.7
TraesCS3A03G0664500 Triticum aestivum HOM05M000561 ORTHO05M003873 2.9e-148 528.9 530 51.9
OB01G36480 Oryza brachyantha HOM05M000561 ORTHO05M003873 6.5e-148 527.7 511 52.6
V3.Lp_chr3_0G15112 Lolium perenne HOM05M000561 ORTHO05M003873 1.5e-147 526.6 538 51.1
TRITD3Bv1G154680 Triticum turgidum HOM05M000561 ORTHO05M003873 2.5e-147 525.8 530 51.5
Glyma.07G097800 Glycine max HOM05M000561 ORTHO05M003873 1.0e-145 520.4 529 52.9
SEGI_33596 Sequoiadendron giganteum HOM05M000561 ORTHO05M003873 1.5e-144 516.5 572 49.3
CDE06G1798 Ceratophyllum demersum HOM05M000561 ORTHO05M003873 9.8e-144 513.8 522 52.1
Glyma.10G270400 Glycine max HOM05M000561 ORTHO05M003873 1.7e-143 513.1 538 51.7
TRIDC3AG038950 Triticum dicoccoides HOM05M000561 ORTHO05M003873 1.8e-142 509.6 512 51.6
TRIDC3BG044100 Triticum dicoccoides HOM05M000561 ORTHO05M003873 2.7e-141 505.8 512 51.2
Glyma.09G180200 Glycine max HOM05M000561 ORTHO05M003873 4.5e-141 505.0 528 52.7
Sspon.03G0008580-1A Saccharum spontaneum HOM05M000561 ORTHO05M003873 5.9e-141 504.6 532 50.8
TraesCS3B03G0758600 Triticum aestivum HOM05M000561 ORTHO05M003873 1.9e-139 499.6 518 50.4
Potri.012G053700 Populus trichocarpa HOM05M000561 ORTHO05M003873 2.5e-139 499.2 522 51.5
TRITD3Av1G173980 Triticum turgidum HOM05M000561 ORTHO05M003873 5.2e-137 491.5 518 49.6
Zosma03g00950 Zostera marina HOM05M000561 ORTHO05M003873 2.6e-136 489.2 515 48.3
GWHGAZTO048184 Oryza alta HOM05M000561 ORTHO05M003873 3.7e-135 485.3 522 50.0
Zm00007a00001686 Zea mays B104 HOM05M000561 ORTHO05M003873 9.2e-134 480.7 517 49.9
OB08G20610 Oryza brachyantha HOM05M000561 ORTHO05M003873 2.0e-133 479.6 520 49.4
Pahal.6G166200 Panicum hallii HOM05M000561 ORTHO05M003873 2.0e-133 479.6 517 50.5
GWHGAORA002401 Cenchrus purpureus HOM05M000561 ORTHO05M003873 7.8e-133 477.6 521 49.5
OsKitaake08g128800 Oryza sativa Kitaake HOM05M000561 ORTHO05M003873 1.0e-132 477.2 517 49.9
Os08g0359300 Oryza sativa ssp. japonica HOM05M000561 ORTHO05M003873 1.0e-132 477.2 517 49.9
Seita.6G124200 Setaria italica HOM05M000561 ORTHO05M003873 1.3e-132 476.9 518 49.6
Sevir.6G134000 Setaria viridis HOM05M000561 ORTHO05M003873 1.3e-132 476.9 518 49.6
OsR498G0815885200.01 Oryza sativa ssp. indica HOM05M000561 ORTHO05M003873 1.7e-132 476.5 517 49.9
GWHGAORA044442 Cenchrus purpureus HOM05M000561 ORTHO05M003873 6.6e-132 474.6 557 46.7
GWHGAZTO056865 Oryza alta HOM05M000561 ORTHO05M003873 8.6e-132 474.2 490 51.2
Sspon.06G0007500-3D Saccharum spontaneum HOM05M000561 ORTHO05M003873 1.5e-131 473.4 519 49.7
Sspon.06G0007500-1A Saccharum spontaneum HOM05M000561 ORTHO05M003873 3.3e-131 472.2 519 49.7
Ot_Chr3_g11525 Oropetium thomaeum HOM05M000561 ORTHO05M003873 7.3e-131 471.1 516 47.9
Sspon.06G0007500-2B Saccharum spontaneum HOM05M000561 ORTHO05M003873 1.2e-130 470.3 519 49.5
Misin07G327400 Miscanthus sinensis HOM05M000561 ORTHO05M003873 1.6e-130 469.9 519 49.5
Ot_Chr9_g02458 Oropetium thomaeum HOM05M000561 ORTHO05M003873 3.6e-130 468.8 519 48.7
Sobic.007G108400 Sorghum bicolor HOM05M000561 ORTHO05M003873 1.8e-129 466.5 519 48.6
Solyc03g118850.4 Solanum lycopersicum HOM05M000561 ORTHO05M003873 2.3e-129 466.1 515 48.7
GWHGAZTO094743 Oryza alta HOM05M000561 ORTHO05M003873 7.5e-128 461.1 504 50.0
SMO165G0110 Selaginella moellendorffii HOM05M000561 ORTHO05M003873 1.3e-127 460.3 515 46.8
DDU029G0040 Dioscorea dumetorum HOM05M000561 ORTHO05M003873 2.1e-122 443.0 409 55.3
DDU921G0002 Dioscorea dumetorum HOM05M000561 ORTHO05M003873 2.1e-122 443.0 408 55.4
AT1G73750 Arabidopsis thaliana HOM05M000561 ORTHO05M003873 2.4e-118 429.5 514 44.0
AagrBONN_evm.TU.Sc2ySwM_368.1681 Anthoceros agrestis HOM05M000561 ORTHO05M003873 2.7e-117 426.0 536 43.8
EJB05_49964 Eragrostis curvula HOM05M000561 ORTHO05M003873 4.6e-117 425.2 553 43.8
Pp3c6_12730 Physcomitrium patens HOM05M000561 ORTHO05M003873 3.9e-116 422.2 562 42.0
Pp3c8_17160 Physcomitrium patens HOM05M000561 ORTHO05M003873 9.5e-115 417.5 586 40.1
CALSI_Maker00040939 Calamus simplicifolius HOM05M000561 ORTHO05M003873 1.1e-113 414.1 544 46.0
PH02Gene24403 Phyllostachys edulis HOM05M000561 ORTHO05M003873 6.8e-113 411.4 517 45.6
CALSI_Maker00032136 Calamus simplicifolius HOM05M000561 ORTHO05M003873 5.4e-110 401.7 588 42.3
Sspon.03G0008580-2D Saccharum spontaneum HOM05M000561 ORTHO05M003873 2.1e-109 399.8 449 49.0
GWHGAORA032004 Cenchrus purpureus HOM05M000561 ORTHO05M003873 1.7e-108 396.7 502 43.8
GWHGAORA044422 Cenchrus purpureus HOM05M000561 ORTHO05M003873 2.5e-107 392.9 526 43.3
Zm00001eb156070 Zea mays B73 HOM05M000561 ORTHO05M003873 6.8e-105 384.8 414 49.0
Misin13G095300 Miscanthus sinensis HOM05M000561 ORTHO05M003873 2.2e-103 379.8 522 43.9
Spipo8G0064700 Spirodela polyrhiza HOM05M000561 ORTHO05M003873 5.6e-99 365.2 523 41.3
Asa4G01409 Allium sativum HOM05M000561 ORTHO05M003873 6.4e-95 351.7 355 52.7
Zm00007a00039301 Zea mays B104 HOM05M000561 ORTHO05M003873 7.1e-94 348.2 525 39.2
Bradi3g22010 Brachypodium distachyon HOM05M000561 ORTHO05M003873 1.4e-89 334.0 448 45.3
CBR_g3157 Chara braunii HOM05M000561 ORTHO05M003873 9.3e-86 321.2 615 35.0
EJB05_49674 Eragrostis curvula HOM05M000561 ORTHO05M003873 8.7e-84 314.7 502 38.0
Aco006710 Ananas comosus HOM05M000561 ORTHO05M003873 4.8e-82 308.9 328 47.6
Misin06G228400 Miscanthus sinensis HOM05M000561 ORTHO05M003873 1.8e-76 290.4 331 47.4
GWHGAZTO004511 Oryza alta HOM05M000561 ORTHO05M003873 2.3e-76 290.0 486 38.1
PH02Gene06586 Phyllostachys edulis HOM05M000561 ORTHO05M003873 5.1e-76 288.9 378 45.0
Asa4G05642 Allium sativum HOM05M000561 ORTHO05M003873 2.4e-73 280.0 214 62.1
Asa4G05641 Allium sativum HOM05M000561 ORTHO05M003873 2.2e-71 273.5 288 49.7
MisinT258100 Miscanthus sinensis HOM05M000561 ORTHO05M003873 5.1e-60 235.7 299 44.1
Dexi5A01G0024020 Digitaria exilis HOM05M000561 ORTHO05M003873 7.4e-59 231.9 173 61.3
Dexi5B01G0024260 Digitaria exilis HOM05M000561 ORTHO05M003873 3.7e-58 229.6 173 60.7
Zm00001eb042900 Zea mays B73 HOM05M000561 ORTHO05M003873 3.4e-56 223.0 318 41.5
MisinT258200 Miscanthus sinensis HOM05M000561 ORTHO05M003873 1.1e-54 218.0 203 54.2
Misin06G228600 Miscanthus sinensis HOM05M000561 ORTHO05M003873 5.7e-43 179.1 126 62.7
Zm00007a00005697 Zea mays B104 HOM05M000561 ORTHO05M003873 1.7e-42 177.6 129 62.0
Dexi6B01G0009910 Digitaria exilis HOM05M000561 ORTHO05M003873 6.3e-42 175.6 289 39.1
Zjn_sc00081.1.g00200.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM05M000561 ORTHO05M003873 1.1e-41 174.9 515 26.6
Dexi6A01G0011760 Digitaria exilis HOM05M000561 ORTHO05M003873 5.3e-41 172.6 282 39.4
Zm00007a00034901 Zea mays B104 HOM05M000023 ORTHO05M003873 7.0e-41 172.2 138 58.0
MBI16_g38074_MAGBIO Magnolia biondii HOM05M000561 ORTHO05M003873 1.6e-40 171.0 106 73.6
Zjn_sc00029.1.g02960.1.am.mkhc Zoysia japonica ssp. nagirizaki HOM05M000561 ORTHO05M003873 4.2e-38 162.9 189 47.6
MBI16_g39816_MAGBIO Magnolia biondii HOM05M000561 ORTHO05M003873 3.4e-35 153.3 91 75.8
Zm00001eb038480 Zea mays B73 HOM05M000561 ORTHO05M003873 9.7e-35 151.8 106 63.2
DDU029G0198 Dioscorea dumetorum HOM05M000561 ORTHO05M003873 6.3e-34 149.1 99 64.6
DDU921G0005 Dioscorea dumetorum HOM05M000561 ORTHO05M003873 1.1e-33 148.3 99 64.6
Zm00001eb050580 Zea mays B73 HOM05M000561 ORTHO05M003873 1.8e-33 147.5 106 62.3
Cre10.g451100 Chlamydomonas reinhardtii HOM05M000561 ORTHO05M003873 2.4e-17 94.0 257 28.8
p5.00_sc00008_p0067 Elaeis guineensis HOM05M000561 ORTHO05M003873 4.0e-12 76.6 80 46.2
MCO12G491 Micromonas commoda HOM05M000561 ORTHO05M003873 5.0e-07 59.7 111 28.8
Zm00007a00018826 Zea mays B104 HOM05M000561 ORTHO05M003873 5.6e-06 56.2 41 58.5


User provided reference genes

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