Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g049470.4 Solanum lycopersicum HOM05M006478 ORTHO05M008177 2.0e-89 331.6 165 100.0
MBI16_g26181_MAGBIO Magnolia biondii HOM05M006478 ORTHO05M008177 7.8e-46 186.8 138 68.8
Glyma.02G267200 Glycine max HOM05M006478 ORTHO05M008177 2.3e-45 185.3 161 59.0
Potri.014G159600 Populus trichocarpa HOM05M006478 ORTHO05M008177 1.9e-44 182.2 151 61.6
Ma04_g04120 Musa acuminata HOM05M006478 ORTHO05M008177 2.2e-40 168.7 146 57.5
CDE04G1581 Ceratophyllum demersum HOM05M006478 ORTHO05M008177 3.8e-40 167.9 132 61.4
evm.TU.AsparagusV1_01.145.V1.1 Asparagus officinalis HOM05M006478 ORTHO05M008177 1.2e-38 162.9 149 55.0
p5.00_sc00037_p0106 Elaeis guineensis HOM05M006478 ORTHO05M008177 1.6e-38 162.5 128 58.6
HPP92_000210 Vanilla planifolia HOM05M006478 ORTHO05M008177 1.7e-37 159.1 152 52.6
HPP92_000219 Vanilla planifolia HOM05M006478 ORTHO05M008177 1.5e-36 156.0 152 52.0
SEGI_13182 Sequoiadendron giganteum HOM05M006478 ORTHO05M008177 4.3e-36 154.5 150 54.0
Zosma05g29790 Zostera marina HOM05M006478 ORTHO05M008177 1.6e-35 152.5 128 57.8
p5.00_sc00109_p0037 Elaeis guineensis HOM05M006478 ORTHO05M008177 6.9e-34 147.1 140 52.9
PH02Gene00373 Phyllostachys edulis HOM05M006478 ORTHO05M008177 2.6e-33 145.2 155 52.3
OsKitaake04g302300 Oryza sativa Kitaake HOM05M006478 ORTHO05M008177 5.8e-33 144.1 140 53.6
OsR498G0409459600.01 Oryza sativa ssp. indica HOM05M006478 ORTHO05M008177 5.8e-33 144.1 140 53.6
Os04g0669100 Oryza sativa ssp. japonica HOM05M006478 ORTHO05M008177 5.8e-33 144.1 140 53.6
GWHGAZTO032017 Oryza alta HOM05M006478 ORTHO05M008177 7.6e-33 143.7 155 49.0
CALSI_Maker00037763 Calamus simplicifolius HOM05M006478 ORTHO05M008177 1.7e-32 142.5 158 49.4
Bradi5g25547 Brachypodium distachyon HOM05M006478 ORTHO05M008177 8.4e-32 140.2 139 50.4
EJB05_40081 Eragrostis curvula HOM05M006478 ORTHO05M008177 8.4e-32 140.2 124 54.0
GWHGAZTO046007 Oryza alta HOM05M006478 ORTHO05M008177 1.1e-31 139.8 155 48.4
OB04G35910 Oryza brachyantha HOM05M004381 ORTHO05M005045 1.1e-31 139.8 151 49.0
Seita.3G031500 Setaria italica HOM05M006478 ORTHO05M008177 1.4e-31 139.4 123 56.1
Sevir.3G032700 Setaria viridis HOM05M006478 ORTHO05M008177 1.4e-31 139.4 123 56.1
GWHGAORA020899 Cenchrus purpureus HOM05M006478 ORTHO05M008177 2.4e-31 138.7 123 55.3
GWHGAORA063543 Cenchrus purpureus HOM05M006478 ORTHO05M008177 5.4e-31 137.5 123 56.1
Pahal.7G331000 Panicum hallii HOM05M006478 ORTHO05M008177 5.4e-31 137.5 123 53.7
V3.Lp_chr2_0G23930 Lolium perenne HOM05M006478 ORTHO05M008177 9.3e-31 136.7 148 48.0
Misin11G256400 Miscanthus sinensis HOM05M006478 ORTHO05M008177 9.3e-31 136.7 153 49.7
Spipo12G0001900 Spirodela polyrhiza HOM05M006478 ORTHO05M008177 9.3e-31 136.7 146 49.3
Sobic.006G258900 Sorghum bicolor HOM05M006478 ORTHO05M008177 1.2e-30 136.3 106 59.4
Zm00001eb433230 Zea mays B73 HOM05M006478 ORTHO05M008177 1.6e-30 136.0 154 47.4
Ot_Chr6_g02013 Oropetium thomaeum HOM05M006478 ORTHO05M008177 2.1e-30 135.6 130 50.8
Sspon.05G0001350-1P Saccharum spontaneum HOM05M006478 ORTHO05M008177 2.1e-30 135.6 106 58.5
Sspon.05G0001350-2D Saccharum spontaneum HOM05M006478 ORTHO05M008177 2.1e-30 135.6 106 58.5
TraesCS2B03G1430400 Triticum aestivum HOM05M006478 ORTHO05M008177 2.7e-30 135.2 142 48.6
TRITD2Bv1G249490 Triticum turgidum HOM05M006478 ORTHO05M008177 2.7e-30 135.2 142 48.6
Zjn_sc00023.1.g05990.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM05M006478 ORTHO05M008177 2.7e-30 135.2 140 47.9
TraesCS2A03G1249500 Triticum aestivum HOM05M006478 ORTHO05M008177 3.5e-30 134.8 142 49.3
TRIDC2AG075550 Triticum dicoccoides HOM05M006478 ORTHO05M008177 3.5e-30 134.8 142 49.3
TRITD2Av1G282610 Triticum turgidum HOM05M006478 ORTHO05M008177 3.5e-30 134.8 142 49.3
TraesCS2D03G1205000 Triticum aestivum HOM05M006478 ORTHO05M008177 4.6e-30 134.4 142 48.6
Horvu_MOREX_2H01G767100 Hordeum vulgare HOM05M006478 ORTHO05M008177 6.0e-30 134.0 155 48.4
GWHGASIY011706 Secale cereale HOM05M006478 ORTHO05M008177 1.0e-29 133.3 139 48.9
GWHGASIY011796 Secale cereale HOM05M006478 ORTHO05M008177 1.0e-29 133.3 139 48.9
Zm00001eb066900 Zea mays B73 HOM05M006478 ORTHO05M008177 1.0e-29 133.3 150 48.0
Glyma.14G050300 Glycine max HOM05M006478 ORTHO05M008177 7.4e-28 127.1 133 51.9
Zm00007a00027563 Zea mays B104 HOM05M006478 ORTHO05M008177 3.7e-27 124.8 165 44.2
AT1G04985 Arabidopsis thaliana HOM05M006478 ORTHO05M008177 6.9e-26 120.6 128 54.7
ATR1128G110 Amborella trichopoda HOM05M006478 ORTHO05M008177 1.4e-23 112.8 94 56.4
Dexi7A01G0022310 Digitaria exilis HOM05M006478 ORTHO05M008177 3.2e-23 111.7 155 43.2
Pp3c2_22540 Physcomitrium patens HOM05M006478 ORTHO05M008177 9.3e-23 110.2 119 47.1
AagrBONN_evm.TU.Sc2ySwM_228.5805 Anthoceros agrestis HOM05M006478 ORTHO05M008177 5.1e-21 104.4 93 50.5
CDE07G1564 Ceratophyllum demersum HOM05M006478 ORTHO05M008177 2.5e-20 102.1 94 56.4
Zm00007a00035418 Zea mays B104 HOM05M004381 ORTHO05M005045 1.2e-17 93.2 80 52.5
PH02Gene20588 Phyllostachys edulis HOM05M006478 ORTHO05M008177 5.8e-17 90.9 83 53.0
CBR_g23765 Chara braunii HOM05M006478 ORTHO05M008177 1.4e-15 86.3 95 45.3
SMO111G0036 Selaginella moellendorffii HOM05M006478 ORTHO05M008177 1.4e-15 86.3 106 37.7
SMO358G0556 Selaginella moellendorffii HOM05M006478 ORTHO05M008177 1.4e-15 86.3 106 37.7
Aco026515 Ananas comosus HOM05M006478 ORTHO05M008177 5.5e-15 84.3 62 58.1
DDU775G0049 Dioscorea dumetorum HOM05M006478 ORTHO05M008177 7.2e-15 84.0 156 35.3
Misin12G267300 Miscanthus sinensis HOM05M006478 ORTHO05M008177 2.5e-12 75.5 59 54.2
Sobic.004G253601 Sorghum bicolor HOM05M006478 ORTHO05M008177 1.8e-10 69.3 55 54.5
Sspon.05G0001350-1A Saccharum spontaneum HOM05M006478 ORTHO05M008177 1.2e-09 66.6 54 55.6


User provided reference genes

Program Settings