Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g018090.4 Solanum lycopersicum HOM05M004625 ORTHO05M005698 1.6e-146 521.9 257 100.0
Potri.018G140800 Populus trichocarpa HOM05M004625 ORTHO05M005698 4.3e-91 337.8 251 63.7
Glyma.15G167100 Glycine max HOM05M004625 ORTHO05M005698 4.0e-89 331.3 263 60.8
AT3G28430 Arabidopsis thaliana HOM05M004625 ORTHO05M005698 3.9e-84 314.7 248 62.1
Potri.006G073600 Populus trichocarpa HOM05M004625 ORTHO05M005698 7.3e-83 310.5 251 59.0
evm.TU.AsparagusV1_01.641.V1.1 Asparagus officinalis HOM05M004625 ORTHO05M005698 5.8e-80 300.8 245 60.0
ATR0580G026 Amborella trichopoda HOM05M004625 ORTHO05M005698 3.9e-76 288.1 249 55.4
DDU506G0208 Dioscorea dumetorum HOM05M004625 ORTHO05M005698 4.3e-75 284.6 271 55.7
MBI14_g10721_MAGBIO Magnolia biondii HOM05M004625 ORTHO05M005698 9.6e-75 283.5 244 57.4
Ma05_g04650 Musa acuminata HOM05M004625 ORTHO05M005698 2.8e-74 282.0 247 58.7
CALSI_Maker00050031 Calamus simplicifolius HOM05M004625 ORTHO05M005698 4.0e-73 278.1 247 55.1
p5.00_sc00077_p0084 Elaeis guineensis HOM05M004625 ORTHO05M005698 2.0e-72 275.8 251 55.4
Aco012190 Ananas comosus HOM05M004625 ORTHO05M005698 1.3e-71 273.1 248 54.4
HPP92_015379 Vanilla planifolia HOM05M004625 ORTHO05M005698 1.3e-71 273.1 244 57.0
PH02Gene13168 Phyllostachys edulis HOM05M004625 ORTHO05M005698 3.9e-68 261.5 244 52.5
GWHGAORA029694 Cenchrus purpureus HOM05M004625 ORTHO05M005698 6.6e-68 260.8 251 51.0
Pahal.7G089800 Panicum hallii HOM05M004625 ORTHO05M005698 1.9e-67 259.2 251 51.0
Seita.7G044700 Setaria italica HOM05M004625 ORTHO05M005698 5.6e-67 257.7 251 50.6
PH02Gene12151 Phyllostachys edulis HOM05M004625 ORTHO05M005698 7.4e-67 257.3 251 51.0
Sevir.7G049700 Setaria viridis HOM05M004625 ORTHO05M005698 9.6e-67 256.9 251 50.6
Zm00001eb420400 Zea mays B73 HOM05M004625 ORTHO05M005698 1.6e-66 256.1 251 52.2
Zosma01g00640 Zostera marina HOM05M004625 ORTHO05M005698 1.6e-66 256.1 247 52.6
V3.Lp_chr2_0G13926 Lolium perenne HOM05M004625 ORTHO05M005698 3.6e-66 255.0 244 52.5
Misin11G032900 Miscanthus sinensis HOM05M004625 ORTHO05M005698 6.2e-66 254.2 251 51.0
Misin12G044000 Miscanthus sinensis HOM05M004625 ORTHO05M005698 8.1e-66 253.8 251 51.0
Ot_Chr6_g08974 Oropetium thomaeum HOM05M004625 ORTHO05M005698 2.4e-65 252.3 247 50.2
Bradi5g05162 Brachypodium distachyon HOM05M004625 ORTHO05M005698 6.9e-65 250.8 251 50.2
GWHGAZTO078461 Oryza alta HOM05M004625 ORTHO05M005698 6.9e-65 250.8 251 50.6
Os04g0298600 Oryza sativa ssp. japonica HOM05M004625 ORTHO05M005698 6.9e-65 250.8 254 50.4
AET2Gv20608900 Aegilops tauschii HOM05M004625 ORTHO05M005698 9.0e-65 250.4 244 52.0
p5.00_sc00019_p0203 Elaeis guineensis HOM05M004625 ORTHO05M005698 9.0e-65 250.4 247 52.6
OsKitaake04g067900 Oryza sativa Kitaake HOM05M004625 ORTHO05M005698 9.0e-65 250.4 251 50.6
OsR498G0407974700.01 Oryza sativa ssp. indica HOM05M004625 ORTHO05M005698 9.0e-65 250.4 251 50.6
TraesCS2A03G0667300 Triticum aestivum HOM05M004625 ORTHO05M005698 9.0e-65 250.4 244 51.6
TraesCS2D03G0622800 Triticum aestivum HOM05M004625 ORTHO05M005698 9.0e-65 250.4 244 52.0
TRIDC2AG038930 Triticum dicoccoides HOM05M004625 ORTHO05M005698 9.0e-65 250.4 244 51.6
TRIDC2BG042020 Triticum dicoccoides HOM05M004625 ORTHO05M005698 9.0e-65 250.4 244 51.6
TRITD2Bv1G133050 Triticum turgidum HOM05M004625 ORTHO05M005698 9.0e-65 250.4 244 51.6
GWHGAZTO028819 Oryza alta HOM05M004625 ORTHO05M005698 2.6e-64 248.8 251 49.8
OB04G15310 Oryza brachyantha HOM05M004625 ORTHO05M005698 3.4e-64 248.4 251 49.8
Sspon.05G0026860-2C Saccharum spontaneum HOM05M004625 ORTHO05M005698 5.5e-62 241.1 242 51.7
Sobic.006G035300 Sorghum bicolor HOM05M004625 ORTHO05M005698 9.3e-62 240.4 227 52.9
Dexi7B01G0003200 Digitaria exilis HOM05M004625 ORTHO05M005698 1.6e-61 239.6 242 50.8
Zm00007a00008731 Zea mays B104 HOM05M004625 ORTHO05M005698 1.6e-61 239.6 227 53.7
Zjn_sc00171.1.g00120.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM05M004625 ORTHO05M005698 2.3e-60 235.7 246 49.2
TRITD2Av1G157130 Triticum turgidum HOM05M004625 ORTHO05M005698 2.1e-58 229.2 205 55.1
Zjn_sc00006.1.g07260.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM05M004625 ORTHO05M005698 3.7e-58 228.4 201 54.7
SEGI_03548 Sequoiadendron giganteum HOM05M004625 ORTHO05M005698 5.5e-54 214.5 245 47.8
Glyma.09G060600 Glycine max HOM05M004625 ORTHO05M005698 4.6e-53 211.5 164 60.4
MBI16_g46830_MAGBIO Magnolia biondii HOM05M004625 ORTHO05M005698 1.7e-47 193.0 142 62.7
TraesCS2B03G0750800 Triticum aestivum HOM05M004625 ORTHO05M005698 3.8e-47 191.8 244 43.0
CDE05G2761 Ceratophyllum demersum HOM05M004625 ORTHO05M005698 6.5e-47 191.0 164 55.5
CDE05G1903 Ceratophyllum demersum HOM05M004625 ORTHO05M005698 2.1e-45 186.0 152 58.6
Mapoly0006s0005 Marchantia polymorpha HOM05M004625 ORTHO05M005698 8.2e-42 174.1 252 41.3
CBR_g9125 Chara braunii HOM05M004625 ORTHO05M005698 3.1e-41 172.2 246 39.8
Pp3c5_16960 Physcomitrium patens HOM05M004625 ORTHO05M005698 3.4e-40 168.7 248 36.3
SMO356G0480 Selaginella moellendorffii HOM05M004625 ORTHO05M005698 1.6e-37 159.8 245 38.4
Pp3c16_8730 Physcomitrium patens HOM05M004625 ORTHO05M005698 8.8e-36 154.1 246 36.6
Glyma.02G198100 Glycine max HOM05M004625 ORTHO05M005698 2.1e-29 132.9 247 34.8
Potri.006G204600 Populus trichocarpa HOM05M004625 ORTHO05M005698 7.9e-29 131.0 244 33.2
AagrBONN_evm.TU.Sc2ySwM_362.2680 Anthoceros agrestis HOM05M004625 ORTHO05M005698 2.8e-26 122.5 168 38.7
SEGI_10738 Sequoiadendron giganteum HOM05M004625 ORTHO05M005698 3.7e-26 122.1 162 41.4
ATR0772G085 Amborella trichopoda HOM05M004625 ORTHO05M005698 8.2e-26 120.9 151 41.7
Glyma.10G078851 Glycine max HOM05M004625 ORTHO05M005698 2.5e-22 109.4 216 31.9
Dexi7A01G0002280 Digitaria exilis HOM05M004625 ORTHO05M005698 3.3e-19 99.0 87 54.0
PRCOL_00003380 Prasinoderma coloniale HOM05M004625 ORTHO05M005698 2.5e-14 82.8 166 32.5
CDE02G4171 Ceratophyllum demersum HOM05M004625 ORTHO05M005698 7.2e-14 81.3 174 30.5
Cre12.g515250 Chlamydomonas reinhardtii HOM05M004625 ORTHO05M005698 1.6e-13 80.1 234 26.1
evm.TU.AsparagusV1_05.1888.V1.1 Asparagus officinalis HOM05M004625 ORTHO05M005698 3.7e-10 68.9 82 50.0
Spipo3G0090300 Spirodela polyrhiza HOM05M004625 ORTHO05M005698 4.5e-08 62.0 46 58.7


User provided reference genes

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