Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g065700.3 Solanum lycopersicum HOM05M003397 ORTHO05M004183 1.3e-272 942.2 686 100.0
Potri.006G263400 Populus trichocarpa HOM05M003397 ORTHO05M004183 8.2e-182 640.6 677 76.4
Potri.018G020200 Populus trichocarpa HOM05M003397 ORTHO05M004183 4.1e-181 638.3 677 77.4
MBI15_g05236_MAGBIO Magnolia biondii HOM05M003397 ORTHO05M004183 8.0e-177 624.0 465 69.7
Glyma.04G061600 Glycine max HOM05M003397 ORTHO05M004183 1.5e-175 619.8 678 74.9
Glyma.06G062300 Glycine max HOM05M003397 ORTHO05M004183 5.7e-175 617.8 677 74.9
ATR0739G094 Amborella trichopoda HOM05M003397 ORTHO05M004183 5.5e-170 601.3 676 74.0
evm.TU.AsparagusV1_05.3372.V1.1 Asparagus officinalis HOM05M003397 ORTHO05M004183 4.4e-167 591.7 677 74.0
Ma07_g29110 Musa acuminata HOM05M003397 ORTHO05M004183 1.7e-163 579.7 676 73.7
HPP92_014401 Vanilla planifolia HOM05M003397 ORTHO05M004183 1.8e-160 569.7 677 72.4
DDU430G0157 Dioscorea dumetorum HOM05M003397 ORTHO05M004183 1.5e-159 566.6 483 63.1
AT5G25150 Arabidopsis thaliana HOM05M003397 ORTHO05M004183 3.7e-158 562.0 678 73.5
Bradi1g30900 Brachypodium distachyon HOM05M003397 ORTHO05M004183 1.2e-156 557.0 675 71.4
Pahal.4G066200 Panicum hallii HOM05M003397 ORTHO05M004183 2.0e-156 556.2 678 70.4
Misin18G206900 Miscanthus sinensis HOM05M003397 ORTHO05M004183 1.0e-155 553.9 678 70.8
GWHGAORA029287 Cenchrus purpureus HOM05M003397 ORTHO05M004183 5.0e-155 551.6 678 70.8
PH02Gene33402 Phyllostachys edulis HOM05M003397 ORTHO05M004183 6.6e-155 551.2 675 71.3
Sobic.010G209400 Sorghum bicolor HOM05M003397 ORTHO05M004183 1.1e-154 550.4 465 62.2
PH02Gene13854 Phyllostachys edulis HOM05M003397 ORTHO05M004183 1.9e-154 549.7 675 70.8
V3.Lp_chr4_0G7120 Lolium perenne HOM05M003397 ORTHO05M004183 2.5e-154 549.3 677 71.5
Sevir.4G205900 Setaria viridis HOM05M003397 ORTHO05M004183 5.6e-154 548.1 677 70.6
GWHGAORA057181 Cenchrus purpureus HOM05M003397 ORTHO05M004183 9.5e-154 547.4 678 70.6
Ot_Chr2_g15753 Oropetium thomaeum HOM05M003397 ORTHO05M004183 9.5e-154 547.4 675 70.2
Seita.4G196300 Setaria italica HOM05M003397 ORTHO05M004183 9.5e-154 547.4 677 70.6
GWHGAZTO088616 Oryza alta HOM05M003397 ORTHO05M004183 4.7e-153 545.0 677 70.5
Pahal.3G164600 Panicum hallii HOM05M003397 ORTHO05M004183 1.4e-152 543.5 678 70.1
EJB05_41732 Eragrostis curvula HOM05M003397 ORTHO05M004183 3.1e-152 542.3 682 69.9
Misin19G200200 Miscanthus sinensis HOM05M003397 ORTHO05M004183 4.0e-152 542.0 465 61.3
GWHGAZTO039851 Oryza alta HOM05M003397 ORTHO05M004183 4.0e-152 542.0 467 62.1
OB06G30550 Oryza brachyantha HOM05M003397 ORTHO05M004183 4.0e-152 542.0 676 71.0
OsR498G0613067300.01 Oryza sativa ssp. indica HOM05M003397 ORTHO05M004183 8.9e-152 540.8 466 61.8
OsKitaake06g234200 Oryza sativa Kitaake HOM05M003397 ORTHO05M004183 3.4e-151 538.9 466 61.6
Os06g0649500 Oryza sativa ssp. japonica HOM05M003397 ORTHO05M004183 3.4e-151 538.9 466 61.6
AET5Gv20732100 Aegilops tauschii HOM05M003397 ORTHO05M004183 1.7e-150 536.6 677 70.5
TraesCS5D03G0731100 Triticum aestivum HOM05M003397 ORTHO05M004183 1.7e-150 536.6 677 70.5
TraesCS5A03G0770200 Triticum aestivum HOM05M003397 ORTHO05M004183 2.2e-150 536.2 467 61.9
Glyma.17G222200 Glycine max HOM05M003397 ORTHO05M004183 3.7e-150 535.4 465 59.6
TraesCS5B03G0805900 Triticum aestivum HOM05M003397 ORTHO05M004183 3.7e-150 535.4 467 61.9
TRITD5Bv1G170510 Triticum turgidum HOM05M003397 ORTHO05M004183 3.7e-150 535.4 467 61.9
Asa1G02490 Allium sativum HOM05M003397 ORTHO05M004183 1.1e-149 533.9 678 69.2
TraesCS7A03G1234000 Triticum aestivum HOM05M003397 ORTHO05M004183 3.2e-149 532.3 677 70.2
CDE05G3472 Ceratophyllum demersum HOM05M003397 ORTHO05M004183 9.2e-149 530.8 466 60.3
Horvu_MOREX_7H01G681000 Hordeum vulgare HOM05M003397 ORTHO05M004183 1.6e-148 530.0 677 70.0
Spipo12G0045000 Spirodela polyrhiza HOM05M003397 ORTHO05M004183 4.6e-148 528.5 453 61.8
TraesCS7D03G1172700 Triticum aestivum HOM05M003397 ORTHO05M004183 3.9e-147 525.4 468 61.1
Zosma03g06410 Zostera marina HOM05M003397 ORTHO05M004183 5.0e-147 525.0 676 68.5
Aco008203 Ananas comosus HOM05M003397 ORTHO05M004183 2.8e-145 519.2 486 59.5
Zjn_sc00008.1.g04030.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM05M003397 ORTHO05M004183 3.6e-145 518.8 467 60.0
GWHGAORA004017 Cenchrus purpureus HOM05M003397 ORTHO05M004183 1.8e-144 516.5 406 64.3
OB07G15100 Oryza brachyantha HOM05M003397 ORTHO05M004183 1.2e-143 513.8 678 68.1
Zm00007a00015423 Zea mays B104 HOM05M003397 ORTHO05M004183 1.1e-141 507.3 694 67.4
Sspon.08G0004850-3C Saccharum spontaneum HOM05M003397 ORTHO05M004183 3.4e-135 485.7 472 57.6
Dexi4B01G0018600 Digitaria exilis HOM05M003397 ORTHO05M004183 1.1e-130 470.7 465 54.6
Zm00001eb388650 Zea mays B73 HOM05M003397 ORTHO05M004183 4.3e-130 468.8 572 74.8
TRITD5Av1G180450 Triticum turgidum HOM05M003397 ORTHO05M004183 1.6e-124 450.3 458 56.1
TRITD7Av1G263820 Triticum turgidum HOM05M003397 ORTHO05M004183 6.6e-123 444.9 458 55.5
CALSI_Maker00033005 Calamus simplicifolius HOM05M003397 ORTHO05M004183 1.1e-122 444.1 714 59.2
Mapoly0009s0169 Marchantia polymorpha HOM05M003397 ORTHO05M004183 3.6e-121 439.1 473 50.5
Pp3c12_23330 Physcomitrium patens HOM05M003397 ORTHO05M004183 6.2e-121 438.3 469 51.4
Ma09_g22930 Musa acuminata HOM05M003397 ORTHO05M004183 1.1e-120 437.6 455 54.5
OsKitaake07g067500 Oryza sativa Kitaake HOM05M003397 ORTHO05M004183 1.1e-117 427.6 359 62.4
GWHGAZTO090194 Oryza alta HOM05M003397 ORTHO05M004183 2.9e-110 402.9 382 59.9
SMO118G0104 Selaginella moellendorffii HOM05M003397 ORTHO05M004183 3.4e-103 379.4 397 52.4
Sspon.01G0044800-1B Saccharum spontaneum HOM05M003397 ORTHO05M004183 2.9e-94 349.7 358 54.2
TraesCS7B03G1120600 Triticum aestivum HOM05M003397 ORTHO05M004183 2.8e-89 333.2 491 74.9
Asa1G02474 Allium sativum HOM05M003397 ORTHO05M004183 1.4e-77 294.3 292 53.8
CALSI_Maker00038647 Calamus simplicifolius HOM05M003397 ORTHO05M004183 1.4e-77 294.3 458 48.9
Asa6G03636 Allium sativum HOM05M003397 ORTHO05M004183 2.7e-76 290.0 261 59.0
Sspon.08G0004850-2B Saccharum spontaneum HOM05M003397 ORTHO05M004183 3.6e-76 289.7 290 55.5
Asa4G00270 Allium sativum HOM05M003397 ORTHO05M004183 1.0e-75 288.1 271 56.5
CALSI_Maker00038648 Calamus simplicifolius HOM05M003397 ORTHO05M004183 5.7e-74 282.3 236 63.6
Zm00001eb259920 Zea mays B73 HOM05M003397 ORTHO05M004183 2.7e-68 263.5 194 69.6
OsR498G0713714700.01 Oryza sativa ssp. indica HOM05M003397 ORTHO05M004183 7.5e-66 255.4 271 54.6
Sspon.08G0004850-1A Saccharum spontaneum HOM05M003397 ORTHO05M004183 1.3e-65 254.6 465 37.4
TRITD7Av1G248330 Triticum turgidum HOM05M003397 ORTHO05M004183 1.8e-64 250.8 207 66.7
Dexi4A01G0019080 Digitaria exilis HOM05M003397 ORTHO05M004183 1.2e-63 248.1 273 51.3
TRIDC7AG071220 Triticum dicoccoides HOM05M003397 ORTHO05M004183 2.5e-61 240.4 369 82.9
TraesCS7A03G1133900 Triticum aestivum HOM05M003397 ORTHO05M004183 1.8e-59 234.2 239 57.7
AET7Gv21243400 Aegilops tauschii HOM05M003397 ORTHO05M004183 3.0e-59 233.4 207 61.4
PRCOL_00000651 Prasinoderma coloniale HOM05M003397 ORTHO05M004183 2.0e-58 230.7 474 33.5
SEGI_13945 Sequoiadendron giganteum HOM05M003397 ORTHO05M004183 2.9e-54 216.9 173 60.7
Zm00007a00012948 Zea mays B104 HOM05M003397 ORTHO05M004183 5.0e-54 216.1 194 58.2
Asa1G02473 Allium sativum HOM05M003397 ORTHO05M004183 1.5e-53 214.5 357 81.5
MCO11G306 Micromonas commoda HOM05M003397 ORTHO05M004183 8.0e-52 208.8 485 30.9
CBR_g41144 Chara braunii HOM05M003397 ORTHO05M004183 4.4e-50 203.0 198 50.0
MCO11G293 Micromonas commoda HOM05M003397 ORTHO05M004183 1.0e-46 191.8 542 28.0
SEGI_28232 Sequoiadendron giganteum HOM05M003397 ORTHO05M004183 1.1e-45 188.3 157 64.3
GWHGAORA038982 Cenchrus purpureus HOM05M003397 ORTHO05M004183 3.6e-44 183.3 210 47.6
CDE05G1210 Ceratophyllum demersum HOM05M003397 ORTHO05M004183 1.8e-43 181.0 142 66.2
Asa6G03637 Allium sativum HOM05M003397 ORTHO05M004183 4.9e-41 172.9 161 55.3
CDE05G3588 Ceratophyllum demersum HOM05M003397 ORTHO05M004183 4.1e-40 169.9 130 63.1
AagrBONN_evm.TU.Sc2ySwM_228.3176 Anthoceros agrestis HOM05M004862 ORTHO05M006379 5.0e-38 162.9 148 55.4
CBR_g39739 Chara braunii HOM05M003397 ORTHO05M004183 2.0e-34 151.0 292 36.6
TRIDC5AG047050 Triticum dicoccoides HOM05M003397 ORTHO05M004183 3.9e-22 110.2 80 66.2
TRIDC5BG050880 Triticum dicoccoides HOM05M003397 ORTHO05M004183 3.9e-22 110.2 80 66.2
Cre12.g526950 Chlamydomonas reinhardtii HOM05M003397 ORTHO05M004183 3.6e-20 103.6 525 22.3
GWHGAZTO090195 Oryza alta HOM05M003397 ORTHO05M004183 4.0e-19 100.1 80 60.0
SEGI_29407 Sequoiadendron giganteum HOM05M003397 ORTHO05M004183 3.4e-18 97.1 68 60.3
Zm00007a00049110 Zea mays B104 HOM05M003397 ORTHO05M004183 3.4e-18 97.1 67 67.2
Glyma.14G103500 Glycine max HOM05M003397 ORTHO05M004183 4.9e-17 93.2 120 45.0
GWHGAZTO042501 Oryza alta HOM05M003397 ORTHO05M004183 7.1e-16 89.4 147 42.2
SEGI_30848 Sequoiadendron giganteum HOM05M003397 ORTHO05M004183 1.6e-15 88.2 77 59.7
Zm00007a00003421 Zea mays B104 HOM05M003397 ORTHO05M004183 2.5e-13 80.9 129 41.9
SEGI_21073 Sequoiadendron giganteum HOM05M003397 ORTHO05M013398 2.2e-09 67.8 54 66.7
Zjn_sc00069.1.g00300.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM05M003397 ORTHO05M004183 3.8e-09 67.0 152 34.2
Glyma.14G103600 Glycine max HOM05M003397 ORTHO05M004183 9.3e-08 62.4 52 61.5
AET7Gv21146400 Aegilops tauschii HOM05M003397 ORTHO05M004183 7.8e-07 59.3 91 40.7
Asa2G06384 Allium sativum HOM05M015206 ORTHO05M018897 5.1e-06 56.6 55 56.4
Glyma.17G165900 Glycine max HOM05M003107 ORTHO05M004428 5.1e-06 56.6 164 28.0


User provided reference genes

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