Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc05g023770.4 Solanum lycopersicum HOM05M001641 ORTHO05M001702 8.2e-174 613.2 397 100.0
Potri.003G164100 Populus trichocarpa HOM05M001641 ORTHO05M001702 7.3e-82 307.8 401 61.1
Solyc03g118390.3 Solanum lycopersicum HOM05M001641 ORTHO05M001702 3.2e-77 292.4 405 48.6
Potri.001G065800 Populus trichocarpa HOM05M001641 ORTHO05M001702 1.3e-75 287.0 402 59.0
Glyma.04G200100 Glycine max HOM05M001641 ORTHO05M001702 1.1e-72 277.3 401 58.6
Potri.012G105400 Populus trichocarpa HOM05M001641 ORTHO05M001702 2.0e-71 273.1 402 54.7
Glyma.20G250000 Glycine max HOM05M001641 ORTHO05M001702 8.4e-70 267.7 395 58.2
Glyma.06G165500 Glycine max HOM05M001641 ORTHO05M001702 2.1e-68 263.1 401 57.9
Glyma.10G298800 Glycine max HOM05M001641 ORTHO05M001702 9.6e-66 254.2 393 56.0
DDU613G0423 Dioscorea dumetorum HOM05M001641 ORTHO05M001702 3.7e-65 252.3 369 49.9
Potri.015G104600 Populus trichocarpa HOM05M001641 ORTHO05M001702 1.8e-64 250.0 400 54.0
CALSI_Maker00037144 Calamus simplicifolius HOM05M001641 ORTHO05M001702 6.9e-64 248.1 397 52.9
CDE05G2604 Ceratophyllum demersum HOM05M001641 ORTHO05M001702 3.4e-63 245.7 398 49.2
AT3G48860 Arabidopsis thaliana HOM05M001641 ORTHO05M001702 1.3e-62 243.8 417 53.5
Ma04_g00060 Musa acuminata HOM05M001641 ORTHO05M001702 1.7e-62 243.4 396 51.8
Ma09_g01020 Musa acuminata HOM05M001641 ORTHO05M001702 2.9e-62 242.7 396 48.7
p5.00_sc00057_p0063 Elaeis guineensis HOM05M001641 ORTHO05M001702 4.2e-61 238.8 396 55.3
CDE05G1489 Ceratophyllum demersum HOM05M001641 ORTHO05M001702 9.3e-61 237.7 378 54.2
AT5G23700 Arabidopsis thaliana HOM05M001641 ORTHO05M001702 2.4e-56 223.0 403 53.1
CALSI_Maker00018832 Calamus simplicifolius HOM05M001641 ORTHO05M001702 4.5e-55 218.8 416 45.4
AET3Gv20979800 Aegilops tauschii HOM05M001641 ORTHO05M001702 3.2e-53 212.6 418 51.2
HPP92_011741 Vanilla planifolia HOM05M001641 ORTHO05M001702 7.1e-53 211.5 401 50.1
Zosma03g22150 Zostera marina HOM05M001641 ORTHO05M001702 2.1e-52 209.9 401 40.9
TraesCS3D03G0957500 Triticum aestivum HOM05M001641 ORTHO05M001702 6.7e-51 204.9 411 50.6
HPP92_011335 Vanilla planifolia HOM05M001641 ORTHO05M001702 4.8e-49 198.7 368 39.9
OsKitaake01g456800 Oryza sativa Kitaake HOM05M001641 ORTHO05M001702 6.3e-49 198.4 277 57.4
Os01g0928100 Oryza sativa ssp. japonica HOM05M001641 ORTHO05M001702 6.3e-49 198.4 277 57.4
GWHGAZTO006750 Oryza alta HOM05M001641 ORTHO05M001702 1.8e-48 196.8 304 53.3
CALSI_Maker00016663 Calamus simplicifolius HOM05M001641 ORTHO05M001702 5.3e-48 195.3 360 50.3
GWHGAZTO059078 Oryza alta HOM05M001641 ORTHO05M001702 2.0e-47 193.4 304 53.3
OB01G51640 Oryza brachyantha HOM05M001641 ORTHO05M001702 4.5e-47 192.2 299 53.8
Asa5G01597 Allium sativum HOM05M001641 ORTHO05M001702 5.9e-47 191.8 395 49.9
Horvu_MOREX_3H01G601500 Hordeum vulgare HOM05M001641 ORTHO05M001702 1.3e-46 190.7 417 49.4
ATR0706G100 Amborella trichopoda HOM05M001641 ORTHO05M001702 2.2e-46 189.9 394 47.5
Aco027227 Ananas comosus HOM05M001641 ORTHO05M001702 3.2e-45 186.0 263 45.6
Aco015077 Ananas comosus HOM05M001641 ORTHO05M001702 2.7e-44 183.0 402 50.5
TRIDC3AG062550 Triticum dicoccoides HOM05M001641 ORTHO05M001702 3.6e-44 182.6 279 55.6
TRIDC3BG070200 Triticum dicoccoides HOM05M001641 ORTHO05M001702 1.0e-43 181.0 279 55.2
Aco006674 Ananas comosus HOM05M001641 ORTHO05M001702 1.4e-43 180.6 408 46.3
GWHGASIY017397 Secale cereale HOM05M001641 ORTHO05M001702 1.8e-43 180.3 306 51.6
V3.Lp_chr3_0G22936 Lolium perenne HOM05M001641 ORTHO05M001702 2.3e-43 179.9 409 48.4
TraesCS3A03G1027900 Triticum aestivum HOM05M001641 ORTHO05M001702 2.3e-43 179.9 299 52.2
TRITD3Av1G250250 Triticum turgidum HOM05M001641 ORTHO05M001702 2.3e-43 179.9 299 52.2
TraesCS3B03G1176300 Triticum aestivum HOM05M001641 ORTHO05M001702 3.0e-43 179.5 306 51.6
TRITD3Bv1G242080 Triticum turgidum HOM05M001641 ORTHO05M001702 8.8e-43 177.9 299 51.8
AT5G13260 Arabidopsis thaliana HOM05M001641 ORTHO05M001702 2.5e-42 176.4 408 45.6
DDU272G0272 Dioscorea dumetorum HOM05M001641 ORTHO05M001702 2.5e-42 176.4 288 40.6
DDU469G0206 Dioscorea dumetorum HOM05M001641 ORTHO05M001702 3.3e-42 176.0 429 38.2
Misin05G403900 Miscanthus sinensis HOM05M001641 ORTHO05M001702 4.8e-41 172.2 291 52.9
Asa5G03438 Allium sativum HOM05M001641 ORTHO05M001702 6.3e-41 171.8 350 48.9
p5.00_sc01766_p0001 Elaeis guineensis HOM05M001641 ORTHO05M001702 2.4e-40 169.9 391 46.0
GWHGAZTO064214 Oryza alta HOM05M001641 ORTHO05M001702 2.4e-40 169.9 273 40.3
PH02Gene26153 Phyllostachys edulis HOM05M001641 ORTHO05M001702 2.4e-40 169.9 267 41.6
Os11g0520500 Oryza sativa ssp. japonica HOM05M001641 ORTHO05M001702 5.3e-40 168.7 270 40.7
OB11G21770 Oryza brachyantha HOM05M001641 ORTHO05M001702 6.9e-40 168.3 299 38.1
Sobic.003G412300 Sorghum bicolor HOM05M001641 ORTHO05M001702 9.1e-40 167.9 292 52.1
Sobic.005G129400 Sorghum bicolor HOM05M001641 ORTHO05M001702 9.1e-40 167.9 270 40.4
Misin09G134700 Miscanthus sinensis HOM05M001641 ORTHO05M001702 1.2e-39 167.5 270 40.4
Misin10G109400 Miscanthus sinensis HOM05M001641 ORTHO05M001702 1.2e-39 167.5 270 40.4
Pahal.8G188500 Panicum hallii HOM05M001641 ORTHO05M001702 1.2e-39 167.5 270 40.4
Zm00007a00011305 Zea mays B104 HOM05M001641 ORTHO05M001702 1.2e-39 167.5 271 40.2
Zm00001eb142490 Zea mays B73 HOM05M001641 ORTHO05M001702 2.0e-39 166.8 291 52.2
Seita.8G134100 Setaria italica HOM05M001641 ORTHO05M001702 2.6e-39 166.4 270 40.4
ATR0582G200 Amborella trichopoda HOM05M001641 ORTHO05M001702 3.4e-39 166.0 407 44.5
OsR498G1120235900.01 Oryza sativa ssp. indica HOM05M001641 ORTHO05M001702 4.5e-39 165.6 268 40.3
OsKitaake11g148100 Oryza sativa Kitaake HOM05M001641 ORTHO05M001702 2.2e-38 163.3 218 43.6
Sspon.06G0014630-2B Saccharum spontaneum HOM05M001641 ORTHO05M001702 2.2e-38 163.3 270 40.4
Zm00001eb170360 Zea mays B73 HOM05M001641 ORTHO05M001702 2.2e-38 163.3 271 40.2
PH02Gene31228 Phyllostachys edulis HOM05M001641 ORTHO05M001702 3.8e-38 162.5 291 37.8
Bradi4g17917 Brachypodium distachyon HOM05M001641 ORTHO05M001702 5.0e-38 162.2 269 39.4
TraesCS4B03G0283400 Triticum aestivum HOM05M001641 ORTHO05M001702 8.5e-38 161.4 267 39.7
Zjn_sc00009.1.g01850.1.am.mkhc Zoysia japonica ssp. nagirizaki HOM05M001641 ORTHO05M001702 8.5e-38 161.4 278 54.0
GWHGASIY019360 Secale cereale HOM05M001641 ORTHO05M001702 1.1e-37 161.0 266 39.8
GWHGASIY019426 Secale cereale HOM05M001641 ORTHO05M001702 1.1e-37 161.0 266 39.8
TraesCS4A03G0516400 Triticum aestivum HOM05M001641 ORTHO05M001702 1.1e-37 161.0 267 39.7
evm.TU.AsparagusV1_04.1549.V1.1 Asparagus officinalis HOM05M001641 ORTHO05M001702 1.4e-37 160.6 292 49.0
PH02Gene12073 Phyllostachys edulis HOM05M001641 ORTHO05M001702 1.4e-37 160.6 278 52.2
Sevir.8G143400 Setaria viridis HOM05M001641 ORTHO05M001702 2.5e-37 159.8 261 40.2
GWHGAORA001803 Cenchrus purpureus HOM05M001641 ORTHO05M001702 7.2e-37 158.3 261 39.8
TraesCS4D03G0241800 Triticum aestivum HOM05M001641 ORTHO05M001702 2.7e-36 156.4 267 39.0
GWHGAORA043474 Cenchrus purpureus HOM05M001641 ORTHO05M001702 3.6e-36 156.0 261 39.5
Asa7G02502 Allium sativum HOM05M001641 ORTHO05M001702 4.7e-36 155.6 400 34.5
TRIDC4BG019110 Triticum dicoccoides HOM05M001641 ORTHO05M001702 6.1e-36 155.2 262 39.3
TRITD4Bv1G050480 Triticum turgidum HOM05M001641 ORTHO05M001702 6.1e-36 155.2 262 39.3
TRIDC4AG030770 Triticum dicoccoides HOM05M001641 ORTHO05M001702 7.9e-36 154.8 262 39.3
TRITD4Av1G154160 Triticum turgidum HOM05M001641 ORTHO05M001702 7.9e-36 154.8 262 39.3
Ot_Chr3_gn33684 Oropetium thomaeum HOM05M001641 ORTHO05M001702 1.8e-35 153.7 272 51.5
Horvu_MOREX_4H01G156600 Hordeum vulgare HOM05M001641 ORTHO05M001702 3.9e-35 152.5 262 38.5
AET4Gv20258700 Aegilops tauschii HOM05M001641 ORTHO05M001702 5.1e-35 152.1 262 38.9
V3.Lp_chr4_0G15794 Lolium perenne HOM05M001641 ORTHO05M001702 1.5e-34 150.6 218 40.8
Pp3c19_10380 Physcomitrium patens HOM05M001641 ORTHO05M001702 2.0e-34 150.2 398 33.4
evm.TU.AsparagusV1_02.2052.V1.1 Asparagus officinalis HOM05M001641 ORTHO05M001702 2.8e-33 146.4 267 38.2
EJB05_27709 Eragrostis curvula HOM05M001641 ORTHO05M001702 4.8e-33 145.6 260 36.9
PH02Gene07294 Phyllostachys edulis HOM05M001641 ORTHO05M001702 4.8e-33 145.6 278 50.4
Aco007293 Ananas comosus HOM05M001641 ORTHO05M001702 6.3e-33 145.2 387 32.6
Sspon.03G0027700-1P Saccharum spontaneum HOM05M001641 ORTHO05M001702 8.2e-33 144.8 284 49.6
Sspon.03G0027700-2C Saccharum spontaneum HOM05M001641 ORTHO05M001702 8.2e-33 144.8 284 49.6
Dexi8B01G0009750 Digitaria exilis HOM05M001641 ORTHO05M001702 1.4e-32 144.1 270 38.9
OsR498G0102629600.01 Oryza sativa ssp. indica HOM05M001641 ORTHO05M001702 1.8e-32 143.7 237 56.1
GWHGAORA046063 Cenchrus purpureus HOM05M001641 ORTHO05M001702 3.1e-32 142.9 283 39.2
evm.TU.AsparagusV1_Unassigned.393.V1.1 Asparagus officinalis HOM05M001641 ORTHO05M001702 5.3e-32 142.1 210 60.0
Misin06G371400 Miscanthus sinensis HOM05M001641 ORTHO05M001702 5.3e-32 142.1 182 63.7
Dexi8A01G0010970 Digitaria exilis HOM05M001641 ORTHO05M001702 7.0e-32 141.7 270 38.5
Sspon.06G0014630-1A Saccharum spontaneum HOM05M001641 ORTHO05M001702 9.1e-32 141.4 270 37.0
Sspon.06G0014630-3C Saccharum spontaneum HOM05M001641 ORTHO05M001702 2.6e-31 139.8 107 62.6
Sspon.06G0014630-4D Saccharum spontaneum HOM05M001641 ORTHO05M001702 5.9e-31 138.7 270 37.0
AT4G08630 Arabidopsis thaliana HOM05M001641 ORTHO05M001702 1.7e-30 137.1 308 35.1
Spipo7G0049800 Spirodela polyrhiza HOM05M001641 ORTHO05M001702 2.9e-30 136.3 368 38.6
AT4G25070 Arabidopsis thaliana HOM05M001641 ORTHO05M001702 1.1e-29 134.4 194 44.8
MBI11_g37360_MAGBIO Magnolia biondii HOM05M001641 ORTHO05M001702 1.1e-29 134.4 339 50.4
GWHGAORA030342 Cenchrus purpureus HOM05M001641 ORTHO05M001702 2.5e-29 133.3 276 49.6
SEGI_04556 Sequoiadendron giganteum HOM05M001641 ORTHO05M001702 2.5e-29 133.3 113 59.3
Sevir.5G445000 Setaria viridis HOM05M001641 ORTHO05M001702 2.5e-29 133.3 276 49.6
Pahal.5G032600 Panicum hallii HOM05M001641 ORTHO05M001702 3.2e-29 132.9 276 49.3
Mapoly0101s0059 Marchantia polymorpha HOM05M001641 ORTHO05M001702 5.5e-29 132.1 400 40.5
EJB05_16464 Eragrostis curvula HOM05M001641 ORTHO05M001702 1.6e-28 130.6 279 48.7
OsKitaake05g036000 Oryza sativa Kitaake HOM05M001641 ORTHO05M001702 2.7e-28 129.8 366 36.1
Potri.005G044600 Populus trichocarpa HOM05M001641 ORTHO05M001702 2.7e-28 129.8 90 67.8
Pp3c19_9680 Physcomitrium patens HOM05M001641 ORTHO05M001702 4.7e-28 129.0 388 42.5
HPP92_009737 Vanilla planifolia HOM05M001641 ORTHO05M001702 8.0e-28 128.3 98 61.2
GWHGAZTO032740 Oryza alta HOM05M001641 ORTHO05M001702 1.4e-27 127.5 366 36.1
Seita.5G438400 Setaria italica HOM05M001641 ORTHO05M001702 3.0e-27 126.3 276 49.3
PH02Gene17379 Phyllostachys edulis HOM05M001641 ORTHO05M001702 6.7e-27 125.2 208 37.5
Bradi2g59510 Brachypodium distachyon HOM05M001641 ORTHO05M001702 8.8e-27 124.8 305 45.2
Zosma05g09320 Zostera marina HOM05M001641 ORTHO05M001702 8.8e-27 124.8 375 33.3
Ot_Chr5_g15532 Oropetium thomaeum HOM05M001641 ORTHO05M001702 1.5e-26 124.0 270 35.2
Ma02_g03510 Musa acuminata HOM05M001641 ORTHO05M001702 2.0e-26 123.6 428 38.3
Dexi3A01G0011290 Digitaria exilis HOM05M001641 ORTHO05M001702 1.3e-25 120.9 281 32.0
DexiUA01G0001410 Digitaria exilis HOM05M001641 ORTHO05M001702 1.3e-25 120.9 281 32.0
GWHGAORA004560 Cenchrus purpureus HOM05M001641 ORTHO05M001702 4.8e-25 119.0 276 31.5
GWHGAORA039413 Cenchrus purpureus HOM05M001641 ORTHO05M001702 6.3e-25 118.6 404 32.4
PH02Gene33024 Phyllostachys edulis HOM05M001641 ORTHO05M001702 6.3e-25 118.6 278 33.1
Seita.3G038900 Setaria italica HOM05M001641 ORTHO05M001702 6.3e-25 118.6 403 34.2
Misin17G049700 Miscanthus sinensis HOM05M001641 ORTHO05M001702 8.2e-25 118.2 274 31.8
GWHGAZTO081780 Oryza alta HOM05M001641 ORTHO05M001702 1.4e-24 117.5 235 34.9
Spipo4G0061800 Spirodela polyrhiza HOM05M001641 ORTHO05M001702 1.8e-24 117.1 368 40.5
Bradi2g36005 Brachypodium distachyon HOM05M001641 ORTHO05M001702 3.1e-24 116.3 270 31.9
Pahal.3G118000 Panicum hallii HOM05M001641 ORTHO05M001702 3.1e-24 116.3 381 29.1
Sevir.3G040200 Setaria viridis HOM05M001641 ORTHO05M001702 5.3e-24 115.5 244 35.2
AagrBONN_evm.TU.Sc2ySwM_344.2709 Anthoceros agrestis HOM05M001641 ORTHO05M001702 7.0e-24 115.2 390 42.1
OB05G13160 Oryza brachyantha HOM05M001641 ORTHO05M001702 1.6e-23 114.0 233 33.0
Zm00007a00006561 Zea mays B104 HOM05M001641 ORTHO05M001702 4.5e-23 112.5 273 33.0
Sspon.07G0013220-1T Saccharum spontaneum HOM05M001641 ORTHO05M001702 1.0e-22 111.3 274 30.7
SMO356G0526 Selaginella moellendorffii HOM05M001641 ORTHO05M001702 5.0e-22 109.0 403 39.7
Zosma05g03260 Zostera marina HOM05M001641 ORTHO05M001702 6.5e-22 108.6 370 28.6
Sspon.07G0013220-2B Saccharum spontaneum HOM05M001641 ORTHO05M001702 8.5e-22 108.2 274 30.3
p5.00_sc00211_p0001 Elaeis guineensis HOM05M001641 ORTHO05M001702 1.1e-21 107.8 142 42.3
Misin16G054100 Miscanthus sinensis HOM05M001641 ORTHO05M001702 3.2e-21 106.3 274 30.7
Sobic.009G042800 Sorghum bicolor HOM05M001641 ORTHO05M001702 5.5e-21 105.5 278 30.2
TraesCS1D03G0218600 Triticum aestivum HOM05M001641 ORTHO05M001702 7.2e-21 105.1 271 33.6
TRITD1Av1G041990 Triticum turgidum HOM05M001641 ORTHO05M001702 9.4e-21 104.8 271 32.8
TraesCS1B03G0304400 Triticum aestivum HOM05M001641 ORTHO05M001702 2.7e-20 103.2 271 33.6
TRITD1Bv1G044830 Triticum turgidum HOM05M001641 ORTHO05M001702 2.7e-20 103.2 271 33.6
Zm00001eb418030 Zea mays B73 HOM05M001641 ORTHO05M001702 3.6e-20 102.8 104 48.1
Horvu_MOREX_1H01G132100 Hordeum vulgare HOM05M001641 ORTHO05M001702 8.0e-20 101.7 419 29.1
Solyc10g037930.2 Solanum lycopersicum HOM05M001641 ORTHO05M001702 1.0e-19 101.3 67 67.2
CBR_g27777 Chara braunii HOM05M001641 ORTHO05M001702 2.3e-19 100.1 392 30.9
MBI11_g43871_MAGBIO Magnolia biondii HOM05M001641 ORTHO05M001702 2.3e-19 100.1 231 44.2
GWHGASIY027800 Secale cereale HOM05M001641 ORTHO05M001702 2.3e-19 100.1 104 50.0
Dexi3B01G0011420 Digitaria exilis HOM05M001641 ORTHO05M001702 3.0e-19 99.8 404 29.5
TraesCS1A03G0247600 Triticum aestivum HOM05M001641 ORTHO05M001702 3.0e-19 99.8 235 33.6
GWHGAZTO012195 Oryza alta HOM05M001641 ORTHO05M001702 5.2e-19 99.0 220 34.5
p5.00_sc00211_p0002 Elaeis guineensis HOM05M001641 ORTHO05M001702 7.5e-18 95.1 236 37.3
OsR498G0509736400.01 Oryza sativa ssp. indica HOM05M001641 ORTHO05M001702 2.8e-17 93.2 65 64.6
HPP92_009736 Vanilla planifolia HOM05M001641 ORTHO05M001702 4.1e-16 89.4 193 38.9
Pp3c22_21255 Physcomitrium patens HOM05M001641 ORTHO05M001702 9.1e-16 88.2 411 37.0
Pp3c22_21290 Physcomitrium patens HOM05M001641 ORTHO05M001702 9.1e-16 88.2 411 37.0
EJB05_33898 Eragrostis curvula HOM05M001641 ORTHO05M001702 1.6e-15 87.4 422 29.6
Mapoly0013s0021 Marchantia polymorpha HOM05M001641 ORTHO05M001702 2.9e-14 83.2 62 58.1
Zm00007a00002495 Zea mays B104 HOM05M001641 ORTHO05M001702 3.0e-11 73.2 231 39.0
Glyma.19G240300 Glycine max HOM05M001641 ORTHO05M001702 2.0e-10 70.5 274 41.2
HPP92_028575 Vanilla planifolia HOM05M001641 ORTHO05M001702 3.4e-10 69.7 62 53.2
Dexi5B01G0037400 Digitaria exilis HOM05M001641 ORTHO05M001702 2.2e-09 67.0 92 50.0
Glyma.03G242800 Glycine max HOM05M001641 ORTHO05M001702 1.1e-08 64.7 273 39.9
CALSI_Maker00048187 Calamus simplicifolius HOM05M001641 ORTHO05M001702 9.1e-08 61.6 84 53.6
Sspon.07G0013220-1A Saccharum spontaneum HOM05M001641 ORTHO05M001702 3.5e-07 59.7 280 26.4
PH02Gene27153 Phyllostachys edulis HOM05M001641 ORTHO05M001702 5.9e-07 58.9 58 50.0
MBI11_g11873_MAGBIO Magnolia biondii HOM05M001641 ORTHO05M001702 1.7e-06 57.4 130 37.7


User provided reference genes

Program Settings