Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g049120.4 Solanum lycopersicum HOM05M003427 ORTHO05M004209 0.0e+00 3066.9 1581 100.0
Potri.010G220000 Populus trichocarpa HOM05M003427 ORTHO05M004209 0.0e+00 1080.1 1790 43.9
Potri.008G041900 Populus trichocarpa HOM05M003427 ORTHO05M004209 1.1e-309 1066.6 1784 43.5
Glyma.20G178500 Glycine max HOM05M003427 ORTHO05M004209 2.0e-295 1019.2 1749 42.3
Glyma.10G212600 Glycine max HOM05M003427 ORTHO05M004209 1.8e-293 1012.7 1769 41.9
MBI14_g09786_MAGBIO Magnolia biondii HOM05M003427 ORTHO05M004209 2.9e-222 776.2 1890 35.7
p5.00_sc00033_p0019 Elaeis guineensis HOM05M003427 ORTHO05M004209 4.5e-175 619.4 1806 32.5
p5.00_sc00121_p0057 Elaeis guineensis HOM05M003427 ORTHO05M004209 7.0e-168 595.5 1806 31.2
CALSI_Maker00024518 Calamus simplicifolius HOM05M003427 ORTHO05M004209 2.3e-163 580.5 1803 32.1
Aco001552 Ananas comosus HOM05M003427 ORTHO05M004209 6.4e-145 519.2 1798 30.2
DDU059G0002 Dioscorea dumetorum HOM05M003427 ORTHO05M004209 1.5e-141 508.1 1770 30.2
Ma09_g04340 Musa acuminata HOM05M003427 ORTHO05M004209 7.3e-141 505.8 1809 30.2
CDE02G1002 Ceratophyllum demersum HOM05M003427 ORTHO05M004209 8.9e-139 498.8 1691 30.5
AT3G52250 Arabidopsis thaliana HOM05M003427 ORTHO05M004209 1.2e-138 498.4 1734 29.6
evm.TU.AsparagusV1_07.498.V1.1 Asparagus officinalis HOM05M003427 ORTHO05M004209 9.9e-138 495.4 1795 30.5
CALSI_Maker00047252 Calamus simplicifolius HOM05M003427 ORTHO05M004209 1.4e-104 385.2 1145 29.9
Zosma03g13910 Zostera marina HOM05M003427 ORTHO05M004209 5.1e-94 350.1 1703 25.7
Sspon.07G0014400-1P Saccharum spontaneum HOM05M003427 ORTHO05M004209 5.3e-91 340.1 928 31.7
PH02Gene04370 Phyllostachys edulis HOM05M003427 ORTHO05M004209 2.6e-90 337.8 1188 30.5
Sobic.009G027300 Sorghum bicolor HOM05M003427 ORTHO05M004209 2.2e-89 334.7 1556 27.0
Bradi2g38160 Brachypodium distachyon HOM05M003427 ORTHO05M004209 1.1e-88 332.4 1179 30.5
OB05G11880 Oryza brachyantha HOM05M003427 ORTHO05M004209 3.2e-88 330.9 1752 26.7
GWHGAZTO032548 Oryza alta HOM05M003427 ORTHO05M004209 4.2e-88 330.5 1584 27.5
GWHGAZTO081595 Oryza alta HOM05M003427 ORTHO05M004209 1.2e-87 328.9 1706 27.0
PH02Gene33613 Phyllostachys edulis HOM05M003427 ORTHO05M004209 2.1e-87 328.2 1774 27.5
Sspon.07G0014400-1A Saccharum spontaneum HOM05M003427 ORTHO05M004209 1.4e-86 325.5 1158 29.1
Misin17G030000 Miscanthus sinensis HOM05M003427 ORTHO05M004209 2.0e-85 321.6 985 29.1
TRIDC1AG009380 Triticum dicoccoides HOM05M003427 ORTHO05M004209 7.4e-85 319.7 909 31.6
Asa8G01456 Allium sativum HOM05M003427 ORTHO05M004209 2.8e-84 317.8 1206 29.7
OsKitaake05g020266 Oryza sativa Kitaake HOM05M003427 ORTHO05M004209 2.8e-84 317.8 1765 26.7
TRIDC1BG011700 Triticum dicoccoides HOM05M003427 ORTHO05M004209 2.8e-84 317.8 891 31.2
OsR498G0509650800.01 Oryza sativa ssp. indica HOM05M003427 ORTHO05M004209 1.4e-83 315.5 1766 26.7
CDE09G0617 Ceratophyllum demersum HOM05M003427 ORTHO05M004209 3.1e-83 314.3 798 32.3
Zm00001eb265240 Zea mays B73 HOM05M003427 ORTHO05M004209 1.2e-82 312.4 1792 26.1
Misin16G039000 Miscanthus sinensis HOM05M003427 ORTHO05M004209 2.0e-82 311.6 1510 25.8
TraesCS1B03G0222300 Triticum aestivum HOM05M003427 ORTHO05M004209 1.7e-81 308.5 1172 29.0
Zm00007a00012294 Zea mays B104 HOM05M003427 ORTHO05M004209 1.4e-80 305.4 1777 25.9
Seita.3G048100 Setaria italica HOM05M003427 ORTHO05M004209 2.3e-78 298.1 1249 28.5
Sevir.3G048600 Setaria viridis HOM05M003427 ORTHO05M004209 2.3e-78 298.1 1249 28.5
EJB05_34159 Eragrostis curvula HOM05M003427 ORTHO05M004209 1.5e-77 295.4 1771 27.0
Ma06_g34660 Musa acuminata HOM05M003427 ORTHO05M004209 1.3e-76 292.4 1020 29.3
Dexi3B01G0009990 Digitaria exilis HOM05M003427 ORTHO05M004209 3.1e-75 287.7 1225 27.4
TraesCS1D03G0155800 Triticum aestivum HOM05M003427 ORTHO05M004209 5.3e-75 287.0 770 31.2
Ot_Chr5_g15399 Oropetium thomaeum HOM05M003427 ORTHO05M004209 1.2e-74 285.8 1771 26.0
TRITD1Bv1G026890 Triticum turgidum HOM05M003427 ORTHO05M004209 5.9e-74 283.5 759 31.6
Zm00007a00032252 Zea mays B104 HOM05M003427 ORTHO05M004209 7.7e-74 283.1 1164 29.0
Zm00001eb355010 Zea mays B73 HOM05M003427 ORTHO05M004209 1.3e-73 282.3 1147 29.0
GWHGAORA039544 Cenchrus purpureus HOM05M003427 ORTHO05M004209 2.2e-73 281.6 1824 26.0
TraesCS1A03G0167300 Triticum aestivum HOM05M003427 ORTHO05M004209 3.8e-73 280.8 807 31.2
Pahal.3G103200 Panicum hallii HOM05M003427 ORTHO05M004209 3.2e-72 277.7 1813 25.6
GWHGAORA004457 Cenchrus purpureus HOM05M003427 ORTHO05M004209 1.2e-71 275.8 1809 25.8
SEGI_14396 Sequoiadendron giganteum HOM05M003427 ORTHO05M004209 6.1e-71 273.5 975 28.9
ATR0314G009 Amborella trichopoda HOM05M003427 ORTHO05M004209 3.0e-70 271.2 775 33.5
Horvu_MOREX_1H01G092900 Hordeum vulgare HOM05M003427 ORTHO05M004209 5.2e-70 270.4 953 28.3
HPP92_006757 Vanilla planifolia HOM05M003427 ORTHO05M004209 6.7e-70 270.0 783 31.7
Zjn_sc00016.1.g05330.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM05M003427 ORTHO05M004209 3.7e-68 264.2 607 34.1
AET1Gv20169800 Aegilops tauschii HOM05M003427 ORTHO05M004209 1.8e-67 261.9 482 36.3
V3.Lp_chr1_0G2052 Lolium perenne HOM05M003427 ORTHO05M004209 6.1e-63 246.9 1015 29.6
ATR0314G007 Amborella trichopoda HOM05M003427 ORTHO05M004209 1.8e-62 245.4 482 38.4
Sspon.07G0014400-2D Saccharum spontaneum HOM05M003427 ORTHO05M004209 1.3e-57 229.2 281 46.3
Spipo23G0034500 Spirodela polyrhiza HOM05M003427 ORTHO05M004209 2.6e-53 214.9 947 27.2
Spipo6G0066300 Spirodela polyrhiza HOM05M003427 ORTHO05M004209 1.2e-50 206.1 341 40.2
Zjn_sc00129.1.g00840.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM05M003427 ORTHO05M004209 8.6e-49 199.9 1716 24.0
Dexi3A01G0009920 Digitaria exilis HOM05M003427 ORTHO05M004209 1.0e-46 193.0 353 36.5
Glyma.13G071701 Glycine max HOM05M003427 ORTHO05M004209 1.2e-45 189.5 586 30.4
SEGI_14984 Sequoiadendron giganteum HOM05M003427 ORTHO05M004209 9.8e-45 186.4 812 27.5
Pp3c11_8780 Physcomitrium patens HOM05M003427 ORTHO05M004209 1.0e-38 166.4 436 30.0
Pp3c11_8790 Physcomitrium patens HOM05M003427 ORTHO05M004209 1.0e-38 166.4 436 30.0
AagrBONN_evm.TU.Sc2ySwM_228.3670 Anthoceros agrestis HOM05M003427 ORTHO05M004209 2.0e-37 162.2 1082 23.2
Pp3c7_16800 Physcomitrium patens HOM05M003427 ORTHO05M004209 2.9e-36 158.3 429 29.1
Seita.9G040100 Setaria italica HOM05M003427 ORTHO05M004209 5.4e-35 154.1 154 51.3
Pp3c4_7100 Physcomitrium patens HOM05M003427 ORTHO05M004209 7.8e-34 150.2 1085 23.7
Mapoly0001s0480 Marchantia polymorpha HOM05M003427 ORTHO05M004209 5.0e-33 147.5 845 25.0
AagrBONN_evm.TU.Sc2ySwM_185.8 Anthoceros agrestis HOM05M003427 ORTHO05M004209 8.9e-30 136.7 257 33.9
AagrBONN_evm.TU.Sc2ySwM_203.1 Anthoceros agrestis HOM05M003427 ORTHO05M004209 8.9e-30 136.7 257 33.9
AagrBONN_evm.TU.Sc2ySwM_351.7 Anthoceros agrestis HOM05M003427 ORTHO05M004209 8.9e-30 136.7 257 33.9
CBR_g49682 Chara braunii HOM05M000279 ORTHO05M000141 2.0e-29 135.6 219 38.4
AagrBONN_evm.TU.Sc2ySwM_351.4 Anthoceros agrestis HOM05M003427 ORTHO05M004209 3.4e-29 134.8 257 33.5
Pp3c4_6990 Physcomitrium patens HOM05M003427 ORTHO05M004209 1.1e-27 129.8 270 33.3
Pp3c12_21290 Physcomitrium patens HOM05M003427 ORTHO05M004209 3.2e-27 128.3 786 23.8
Pp3c12_21500 Physcomitrium patens HOM05M003427 ORTHO05M004209 1.0e-25 123.2 204 35.3
AagrBONN_evm.TU.Sc2ySwM_186.2 Anthoceros agrestis HOM05M003427 ORTHO05M004209 5.1e-25 120.9 365 27.9
MCO13G549 Micromonas commoda HOM05M003427 ORTHO05M004209 1.1e-19 103.2 433 22.6
AagrBONN_evm.TU.Sc2ySwM_25.2 Anthoceros agrestis HOM05M003427 ORTHO05M004209 3.2e-19 101.7 180 35.6
SMO361G0003 Selaginella moellendorffii HOM05M003427 ORTHO05M004209 2.7e-18 98.6 84 53.6
SMO361G0517 Selaginella moellendorffii HOM05M003427 ORTHO05M004209 2.7e-18 98.6 84 53.6
Sevir.7G014800 Setaria viridis HOM05M012287 ORTHO05M014823 1.0e-17 96.7 320 25.0
GWHGAORA029752 Cenchrus purpureus HOM05M012287 ORTHO05M014823 1.5e-16 92.8 287 25.4
Seita.7G029600 Setaria italica HOM05M012287 ORTHO05M014823 4.7e-15 87.8 125 36.8
Cre06.g264400 Chlamydomonas reinhardtii HOM05M003427 ORTHO05M004209 4.0e-14 84.7 115 38.3
Sspon.05G0013670-1A Saccharum spontaneum HOM05M012287 ORTHO05M014823 1.7e-09 69.3 105 33.3
SEGI_23253 Sequoiadendron giganteum HOM05M003427 ORTHO05M004209 1.5e-08 66.2 204 31.4
MBI15_g28963_MAGBIO Magnolia biondii HOM05M003427 ORTHO05M004209 1.3e-07 63.2 93 39.8
Sobic.006G031000 Sorghum bicolor HOM05M012287 ORTHO05M014823 4.8e-07 61.2 118 28.0
CALSI_Maker00011794 Calamus simplicifolius HOM05M003427 ORTHO05M004209 3.1e-06 58.5 188 34.0


User provided reference genes

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