Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g039693.1 Solanum lycopersicum HOM05M000006 ORTHO05M247810 1.2e-51 205.3 96 100.0
V3.Lp_chr2_0G8502 Lolium perenne HOM05M000006 ORTHO05M000001 1.7e-08 62.0 36 66.7
V3.Lp_chr3_0G19624 Lolium perenne HOM05M000006 ORTHO05M000001 1.7e-08 62.0 36 66.7
V3.Lp_chr3_0G23318 Lolium perenne HOM05M000006 ORTHO05M000001 1.7e-08 62.0 36 66.7
V3.Lp_chr3_0G2958 Lolium perenne HOM05M000006 ORTHO05M000001 1.7e-08 62.0 36 66.7
V3.Lp_chr3_0G9480 Lolium perenne HOM05M000006 ORTHO05M000001 1.7e-08 62.0 36 66.7
V3.Lp_chr4_0G18278 Lolium perenne HOM05M000006 ORTHO05M000001 1.7e-08 62.0 36 66.7
V3.Lp_chr4_0G8566 Lolium perenne HOM05M000028 ORTHO05M000016 1.7e-08 62.0 36 66.7
V3.Lp_chr5_0G1426 Lolium perenne HOM05M000006 ORTHO05M000001 1.7e-08 62.0 36 66.7
V3.Lp_chr6_0G17744 Lolium perenne HOM05M000006 ORTHO05M000001 1.7e-08 62.0 36 66.7
Sspon.02G0039230-1B Saccharum spontaneum HOM05M000006 ORTHO05M000001 1.7e-08 62.0 36 66.7
Sspon.05G0004060-1A Saccharum spontaneum HOM05M000006 ORTHO05M000001 1.7e-08 62.0 36 66.7
V3.Lp_chr6_0G1740 Lolium perenne HOM05M000004 ORTHO05M000008 2.2e-08 61.6 36 63.9
V3.Lp_chr1_0G19934 Lolium perenne HOM05M000006 ORTHO05M000001 2.9e-08 61.2 36 63.9
V3.Lp_chr3_0G2924 Lolium perenne HOM05M000006 ORTHO05M000001 2.9e-08 61.2 36 66.7
OsR498G0204671100.01 Oryza sativa ssp. indica HOM05M000006 ORTHO05M000001 3.8e-08 60.8 38 65.8
Sspon.05G0034090-1C Saccharum spontaneum HOM05M000006 ORTHO05M000001 3.8e-08 60.8 39 61.5
Sspon.03G0028530-1B Saccharum spontaneum HOM05M000006 ORTHO05M000001 4.9e-08 60.5 39 61.5
Sspon.05G0032820-1C Saccharum spontaneum HOM05M000002 ORTHO05M000002 4.9e-08 60.5 39 61.5
Sspon.06G0033330-1D Saccharum spontaneum HOM05M000006 ORTHO05M000001 4.9e-08 60.5 39 61.5
V3.Lp_chr6_0G9196 Lolium perenne HOM05M000006 ORTHO05M000001 8.4e-08 59.7 36 61.1
Sspon.08G0026250-1C Saccharum spontaneum HOM05M000006 ORTHO05M000001 8.4e-08 59.7 39 59.0
V3.Lp_chr5_0G2858 Lolium perenne HOM05M000006 ORTHO05M000001 1.4e-07 58.9 36 63.9
V3.Lp_chr6_0G1174 Lolium perenne HOM05M000006 ORTHO05M000001 1.4e-07 58.9 36 61.1
V3.Lp_chr6_0G6860 Lolium perenne HOM05M000006 ORTHO05M000001 1.4e-07 58.9 36 58.3
Sspon.02G0059920-1D Saccharum spontaneum HOM05M000006 ORTHO05M000001 1.9e-07 58.5 36 61.1
Sspon.07G0023370-1B Saccharum spontaneum HOM05M000006 ORTHO05M000001 1.9e-07 58.5 36 61.1
V3.Lp_chr4_0G26902 Lolium perenne HOM05M000006 ORTHO05M000001 2.4e-07 58.2 36 63.9
V3.Lp_chr4_0G2820 Lolium perenne HOM05M000006 ORTHO05M000001 2.4e-07 58.2 36 66.7
Sspon.03G0035250-1B Saccharum spontaneum HOM05M000006 ORTHO05M000001 2.4e-07 58.2 40 57.5
Sspon.05G0039540-1D Saccharum spontaneum HOM05M000006 ORTHO05M000001 2.4e-07 58.2 40 57.5
V3.Lp_chr4_0G4386 Lolium perenne HOM05M000006 ORTHO05M000001 3.2e-07 57.8 39 56.4
V3.Lp_scaffold_2679G2 Lolium perenne HOM05M000006 ORTHO05M000001 3.2e-07 57.8 36 61.1
V3.Lp_scaffold_2679G6 Lolium perenne HOM05M000006 ORTHO05M000001 3.2e-07 57.8 36 61.1
V3.Lp_scaffold_3033G4 Lolium perenne HOM05M000006 ORTHO05M000001 3.2e-07 57.8 36 58.3
V3.Lp_chr1_0G1454 Lolium perenne HOM05M000006 ORTHO05M000001 4.2e-07 57.4 36 58.3
V3.Lp_chr1_0G924 Lolium perenne HOM05M000006 ORTHO05M000001 4.2e-07 57.4 34 67.6
V3.Lp_chr2_0G13562 Lolium perenne HOM05M000006 ORTHO05M000001 4.2e-07 57.4 36 58.3
V3.Lp_chr2_0G24790 Lolium perenne HOM05M000006 ORTHO05M000001 4.2e-07 57.4 36 58.3
V3.Lp_chr2_0G4286 Lolium perenne HOM05M000006 ORTHO05M000001 4.2e-07 57.4 36 58.3
V3.Lp_chr3_0G2378 Lolium perenne HOM05M000006 ORTHO05M000001 4.2e-07 57.4 36 61.1
V3.Lp_chr4_0G12090 Lolium perenne HOM05M000006 ORTHO05M000001 4.2e-07 57.4 36 58.3
V3.Lp_chr4_0G4664 Lolium perenne HOM05M000006 ORTHO05M000001 4.2e-07 57.4 36 58.3
V3.Lp_chr5_0G4442 Lolium perenne HOM05M000006 ORTHO05M000001 4.2e-07 57.4 36 58.3
V3.Lp_chr7_0.1G4128 Lolium perenne HOM05M000006 ORTHO05M000001 4.2e-07 57.4 36 58.3
V3.Lp_scaffold_9371G6 Lolium perenne HOM05M000006 ORTHO05M000001 4.2e-07 57.4 36 58.3
GWHGAZTO008673 Oryza alta HOM05M000006 ORTHO05M000001 4.2e-07 57.4 40 57.5
GWHGAZTO011381 Oryza alta HOM05M000006 ORTHO05M000001 4.2e-07 57.4 40 57.5
Sspon.02G0020050-1A Saccharum spontaneum HOM05M000006 ORTHO05M000001 4.2e-07 57.4 38 55.3
Sspon.01G0045740-1B Saccharum spontaneum HOM05M000006 ORTHO05M000001 5.4e-07 57.0 36 58.3
Sspon.02G0025680-1A Saccharum spontaneum HOM05M000006 ORTHO05M000001 5.4e-07 57.0 36 61.1
Dexi3B01G0029850 Digitaria exilis HOM05M000006 ORTHO05M000001 9.3e-07 56.2 38 57.9
OsR498G0101488900.01 Oryza sativa ssp. indica HOM05M000006 ORTHO05M000001 9.3e-07 56.2 40 57.5
OsR498G0510426700.01 Oryza sativa ssp. indica HOM05M000006 ORTHO05M000001 9.3e-07 56.2 40 57.5
OsR498G1120145400.01 Oryza sativa ssp. indica HOM05M000006 ORTHO05M000001 9.3e-07 56.2 40 57.5
Sspon.07G0006520-1A Saccharum spontaneum HOM05M000006 ORTHO05M000001 9.3e-07 56.2 40 55.0
Dexi1A01G0015070 Digitaria exilis HOM05M000006 ORTHO05M000001 1.2e-06 55.8 35 62.9
V3.Lp_chr1_0G3772 Lolium perenne HOM05M000006 ORTHO05M000001 1.2e-06 55.8 36 61.1
V3.Lp_chr1_0G8684 Lolium perenne HOM05M000006 ORTHO05M000001 1.2e-06 55.8 33 69.7
GWHGAZTO018523 Oryza alta HOM05M000006 ORTHO05M000001 1.2e-06 55.8 40 55.0
GWHGAZTO049099 Oryza alta HOM05M000006 ORTHO05M000001 1.2e-06 55.8 40 55.0
GWHGAZTO059935 Oryza alta HOM05M000006 ORTHO05M000001 1.2e-06 55.8 40 55.0
GWHGAZTO064423 Oryza alta HOM05M000006 ORTHO05M000001 1.2e-06 55.8 39 56.4
GWHGAZTO071649 Oryza alta HOM05M000006 ORTHO05M000001 1.2e-06 55.8 40 55.0
OsR498G0101622500.01 Oryza sativa ssp. indica HOM05M000006 ORTHO05M000001 1.2e-06 55.8 36 61.1
OsR498G0917451500.01 Oryza sativa ssp. indica HOM05M000006 ORTHO05M000001 1.2e-06 55.8 39 59.0
Sspon.07G0032220-1C Saccharum spontaneum HOM05M000006 ORTHO05M000001 1.2e-06 55.8 40 55.0
Sspon.07G0034740-1C Saccharum spontaneum HOM05M000006 ORTHO05M000001 1.2e-06 55.8 38 57.9
V3.Lp_chr1_0G658 Lolium perenne HOM05M000006 ORTHO05M000001 1.6e-06 55.5 32 71.9
V3.Lp_chr6_0G12344 Lolium perenne HOM05M000006 ORTHO05M000001 1.6e-06 55.5 36 55.6
GWHGAZTO042680 Oryza alta HOM05M000006 ORTHO05M000001 1.6e-06 55.5 40 57.5
Sspon.01G0025030-1A Saccharum spontaneum HOM05M000006 ORTHO05M000001 1.6e-06 55.5 36 58.3
V3.Lp_chr4_0G1342 Lolium perenne HOM05M000006 ORTHO05M000001 2.1e-06 55.1 36 58.3
OsR498G0203575900.01 Oryza sativa ssp. indica HOM05M000006 ORTHO05M000001 2.1e-06 55.1 40 55.0
GWHGAZTO084335 Oryza alta HOM05M000006 ORTHO05M000001 2.7e-06 54.7 40 57.5
V3.Lp_chr5_0G4138 Lolium perenne HOM05M000006 ORTHO05M000001 3.5e-06 54.3 36 52.8
OsR498G0100923300.01 Oryza sativa ssp. indica HOM05M000006 ORTHO05M000001 3.5e-06 54.3 40 57.5
Sspon.04G0033030-1C Saccharum spontaneum HOM05M000006 ORTHO05M000001 3.5e-06 54.3 40 52.5
GWHGAZTO028358 Oryza alta HOM05M000006 ORTHO05M000001 4.6e-06 53.9 40 55.0
Sspon.01G0056730-1C Saccharum spontaneum HOM05M000006 ORTHO05M000001 4.6e-06 53.9 40 55.0
Sspon.02G0048690-1C Saccharum spontaneum HOM05M000006 ORTHO05M000001 4.6e-06 53.9 38 55.3
DDU693G0848 Dioscorea dumetorum HOM05M000006 ORTHO05M000001 6.0e-06 53.5 39 56.4
DDU736G0010 Dioscorea dumetorum HOM05M000006 ORTHO05M000001 6.0e-06 53.5 39 56.4
V3.Lp_chr1_0G9442 Lolium perenne HOM05M000006 ORTHO05M000001 6.0e-06 53.5 101 32.7
V3.Lp_chr3_0G11718 Lolium perenne HOM05M000006 ORTHO05M000001 6.0e-06 53.5 36 55.6
GWHGAZTO050676 Oryza alta HOM05M000006 ORTHO05M000001 6.0e-06 53.5 40 55.0
OsR498G0307311200.01 Oryza sativa ssp. indica HOM05M000006 ORTHO05M000001 6.0e-06 53.5 40 55.0
PH02Gene51012 Phyllostachys edulis HOM05M000006 ORTHO05M000001 6.0e-06 53.5 39 53.8
Sspon.02G0013970-1A Saccharum spontaneum HOM05M000006 ORTHO05M003093 6.0e-06 53.5 40 55.0
Sspon.02G0039140-2D Saccharum spontaneum HOM05M000006 ORTHO05M000001 6.0e-06 53.5 40 55.0
V3.Lp_chr3_0G4466 Lolium perenne HOM05M000006 ORTHO05M000001 7.9e-06 53.1 34 61.8
GWHGAZTO072630 Oryza alta HOM05M000006 ORTHO05M000001 7.9e-06 53.1 40 52.5


User provided reference genes

Program Settings