Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g024510.3 Solanum lycopersicum HOM05M002859 ORTHO05M003236 3.2e-84 314.3 163 100.0
CALSI_Maker00040700 Calamus simplicifolius HOM05M002859 ORTHO05M003236 7.9e-75 283.1 161 88.8
evm.TU.AsparagusV1_02.570.V1.1 Asparagus officinalis HOM05M002859 ORTHO05M003236 1.0e-74 282.7 156 92.3
p5.00_sc00045_p0025 Elaeis guineensis HOM05M002859 ORTHO05M003236 3.0e-74 281.2 157 91.1
MBI10_g20270_MAGBIO Magnolia biondii HOM05M002859 ORTHO05M003236 3.0e-74 281.2 157 91.1
evm.TU.AsparagusV1_09.331.V1.1 Asparagus officinalis HOM05M002859 ORTHO05M003236 5.1e-74 280.4 155 91.6
ATR1089G159 Amborella trichopoda HOM05M002859 ORTHO05M003236 1.1e-73 279.3 157 89.2
DDU445G0163 Dioscorea dumetorum HOM05M002859 ORTHO05M003236 1.5e-73 278.9 155 91.6
HPP92_005635 Vanilla planifolia HOM05M002859 ORTHO05M003236 4.4e-73 277.3 156 89.1
Asa3G02274 Allium sativum HOM05M002859 ORTHO05M003236 1.7e-72 275.4 157 87.9
Aco003365 Ananas comosus HOM05M002859 ORTHO05M003236 6.3e-72 273.5 157 87.9
Potri.017G122600 Populus trichocarpa HOM05M002859 ORTHO05M003236 6.3e-72 273.5 157 88.5
Mapoly0005s0018 Marchantia polymorpha HOM05M002859 ORTHO05M003236 1.1e-71 272.7 157 88.5
Spipo9G0051200 Spirodela polyrhiza HOM05M002859 ORTHO05M003236 1.4e-71 272.3 157 88.5
Glyma.02G005000 Glycine max HOM05M002859 ORTHO05M003236 4.1e-71 270.8 157 87.3
SEGI_14103 Sequoiadendron giganteum HOM05M002859 ORTHO05M000002 2.0e-70 268.5 155 88.4
Pahal.3G055500 Panicum hallii HOM05M002859 ORTHO05M003236 1.1e-68 262.7 157 84.1
EJB05_02754 Eragrostis curvula HOM05M002859 ORTHO05M003236 1.9e-68 261.9 157 84.1
EJB05_02789 Eragrostis curvula HOM05M002859 ORTHO05M003236 1.9e-68 261.9 157 84.1
CBR_g22449 Chara braunii HOM05M002859 ORTHO05M003236 3.2e-68 261.2 154 85.1
Misin15G095500 Miscanthus sinensis HOM05M002859 ORTHO05M003236 9.4e-68 259.6 157 82.8
PH02Gene20133 Phyllostachys edulis HOM05M002859 ORTHO05M003236 9.4e-68 259.6 157 84.1
Seita.7G276200 Setaria italica HOM05M002859 ORTHO05M003236 1.2e-67 259.2 157 83.4
Sevir.7G287300 Setaria viridis HOM05M002859 ORTHO05M003236 1.2e-67 259.2 157 83.4
Misin14G078300 Miscanthus sinensis HOM05M002859 ORTHO05M003236 2.1e-67 258.5 157 82.8
Sobic.008G070800 Sorghum bicolor HOM05M002859 ORTHO05M003236 2.1e-67 258.5 157 82.8
GWHGAORA005156 Cenchrus purpureus HOM05M002859 ORTHO05M003236 3.6e-67 257.7 157 82.8
GWHGAORA005170 Cenchrus purpureus HOM05M002859 ORTHO05M003236 3.6e-67 257.7 157 82.8
GWHGAORA040003 Cenchrus purpureus HOM05M002859 ORTHO05M003236 4.7e-67 257.3 157 82.8
Bradi4g40507 Brachypodium distachyon HOM05M002859 ORTHO05M003236 8.0e-67 256.5 157 82.8
V3.Lp_chr5_0G6626 Lolium perenne HOM05M002859 ORTHO05M003236 8.0e-67 256.5 157 82.8
GWHGAZTO014293 Oryza alta HOM05M002859 ORTHO05M003236 8.0e-67 256.5 157 82.2
OsKitaake12g065400 Oryza sativa Kitaake HOM05M002859 ORTHO05M003236 8.0e-67 256.5 157 82.2
GWHGAZTO065919 Oryza alta HOM05M002859 ORTHO05M003236 1.0e-66 256.1 157 81.5
PH02Gene30723 Phyllostachys edulis HOM05M002859 ORTHO05M003236 1.0e-66 256.1 157 83.4
AET5Gv20281600 Aegilops tauschii HOM05M002859 ORTHO05M003236 2.3e-66 255.0 157 82.2
Horvu_MOREX_5H01G196300 Hordeum vulgare HOM05M002859 ORTHO05M003236 2.3e-66 255.0 157 82.2
GWHGASIY025191 Secale cereale HOM05M002859 ORTHO05M003236 2.3e-66 255.0 157 82.2
TraesCS5A03G0296600 Triticum aestivum HOM05M002859 ORTHO05M003236 2.3e-66 255.0 157 82.2
TraesCS5B03G0303900 Triticum aestivum HOM05M002859 ORTHO05M003236 2.3e-66 255.0 157 82.2
TraesCS5D03G0308700 Triticum aestivum HOM05M002859 ORTHO05M003236 2.3e-66 255.0 157 82.2
TRIDC5AG017520 Triticum dicoccoides HOM05M002859 ORTHO05M003236 2.3e-66 255.0 157 82.2
TRIDC5BG019070 Triticum dicoccoides HOM05M002859 ORTHO05M003236 2.3e-66 255.0 157 82.2
TRITD5Av1G075100 Triticum turgidum HOM05M002859 ORTHO05M003236 3.0e-66 254.6 156 82.1
TRITD5Bv1G061520 Triticum turgidum HOM05M002859 ORTHO05M003236 3.0e-66 254.6 156 82.1
CDE05G2224 Ceratophyllum demersum HOM05M002859 ORTHO05M003236 3.9e-66 254.2 155 83.2
Ot_Chr2_g10743 Oropetium thomaeum HOM05M002859 ORTHO05M003236 1.5e-65 252.3 157 80.3
OB11G16210 Oryza brachyantha HOM05M002859 ORTHO05M003236 2.6e-65 251.5 160 80.6
OB12G15410 Oryza brachyantha HOM05M002859 ORTHO05M003236 4.4e-65 250.8 157 80.9
SMO196G0070 Selaginella moellendorffii HOM05M002859 ORTHO05M003236 7.4e-65 250.0 158 81.0
GWHGAZTO063037 Oryza alta HOM05M002859 ORTHO05M003236 9.7e-65 249.6 157 80.9
OsKitaake11g086500 Oryza sativa Kitaake HOM05M002859 ORTHO05M003236 9.7e-65 249.6 157 80.9
OsR498G1119683100.01 Oryza sativa ssp. indica HOM05M002859 ORTHO05M003236 9.7e-65 249.6 157 80.9
Os11g0240900 Oryza sativa ssp. japonica HOM05M002859 ORTHO05M003236 9.7e-65 249.6 157 80.9
Pp3c20_12330 Physcomitrium patens HOM05M002859 ORTHO05M003236 9.7e-65 249.6 154 80.5
Pp3c23_1780 Physcomitrium patens HOM05M002859 ORTHO05M003236 1.7e-64 248.8 156 80.8
Zosma03g36560 Zostera marina HOM05M002859 ORTHO05M003236 1.7e-64 248.8 157 80.9
CDE05G3168 Ceratophyllum demersum HOM05M002859 ORTHO05M003236 4.8e-64 247.3 161 80.1
Pp3c24_6950 Physcomitrium patens HOM05M002859 ORTHO05M003236 4.8e-64 247.3 156 78.8
GWHGAZTO011085 Oryza alta HOM05M002859 ORTHO05M003236 8.2e-64 246.5 157 80.3
Horvu_MOREX_4H01G100200 Hordeum vulgare HOM05M002859 ORTHO05M003236 1.4e-63 245.7 157 79.6
GWHGASIY018792 Secale cereale HOM05M002859 ORTHO05M003236 1.8e-63 245.4 157 79.6
TraesCS4A03G0600900 Triticum aestivum HOM05M002859 ORTHO05M003236 1.8e-63 245.4 157 79.6
TraesCS4B03G0206500 Triticum aestivum HOM05M002859 ORTHO05M003236 1.8e-63 245.4 157 79.6
TraesCS4D03G0170900 Triticum aestivum HOM05M002859 ORTHO05M003236 1.8e-63 245.4 157 79.6
TRIDC4AG035910 Triticum dicoccoides HOM05M002859 ORTHO05M003236 1.8e-63 245.4 157 79.6
TRITD4Av1G167960 Triticum turgidum HOM05M002859 ORTHO05M003236 1.8e-63 245.4 157 79.6
TRITD4Bv1G032140 Triticum turgidum HOM05M002859 ORTHO05M003236 1.8e-63 245.4 157 79.6
AT5G18420 Arabidopsis thaliana HOM05M002859 ORTHO05M003236 3.1e-63 244.6 157 79.6
V3.Lp_chr4_0G10612 Lolium perenne HOM05M002859 ORTHO05M003236 4.1e-63 244.2 157 79.0
Asa8G04154 Allium sativum HOM05M002859 ORTHO05M003236 7.0e-63 243.4 157 76.4
PH02Gene30631 Phyllostachys edulis HOM05M002859 ORTHO05M003236 9.1e-63 243.0 157 78.3
Zm00007a00031805 Zea mays B104 HOM05M002859 ORTHO05M003236 1.2e-62 242.7 146 82.9
Bradi4g21680 Brachypodium distachyon HOM05M002859 ORTHO05M003236 1.6e-62 242.3 157 79.0
GWHGAORA042494 Cenchrus purpureus HOM05M002859 ORTHO05M003236 2.0e-62 241.9 157 79.0
Pahal.8G072400 Panicum hallii HOM05M002859 ORTHO05M003236 4.5e-62 240.7 157 79.0
PH02Gene42705 Phyllostachys edulis HOM05M002859 ORTHO05M003236 1.0e-61 239.6 157 78.3
Os12g0197900 Oryza sativa ssp. japonica HOM05M002859 ORTHO05M003236 8.5e-61 236.5 141 83.7
Ma06_g09040 Musa acuminata HOM05M002859 ORTHO05M003236 2.5e-60 235.0 157 80.3
Sspon.05G0028590-1B Saccharum spontaneum HOM05M002859 ORTHO05M003236 9.4e-60 233.0 157 74.5
Sspon.05G0028590-2C Saccharum spontaneum HOM05M002859 ORTHO05M003236 9.4e-60 233.0 157 74.5
Sobic.005G088900 Sorghum bicolor HOM05M002859 ORTHO05M003236 3.0e-58 228.0 163 72.4
Zm00007a00043421 Zea mays B104 HOM05M002859 ORTHO05M003236 3.0e-58 228.0 150 76.7
Misin10G069200 Miscanthus sinensis HOM05M002859 ORTHO05M003236 6.7e-58 226.9 163 71.2
Zm00001eb167940 Zea mays B73 HOM05M002859 ORTHO05M003236 1.5e-57 225.7 155 72.9
Zm00007a00047908 Zea mays B104 HOM05M002859 ORTHO05M003236 1.5e-57 225.7 160 71.2
HPP92_005645 Vanilla planifolia HOM05M002859 ORTHO05M003236 1.3e-56 222.6 125 88.0
Sspon.07G0029860-2C Saccharum spontaneum HOM05M002859 ORTHO05M003236 2.8e-56 221.5 157 75.8
Zm00001eb112220 Zea mays B73 HOM05M002859 ORTHO05M003236 2.8e-56 221.5 156 73.7
GWHGAORA011545 Cenchrus purpureus HOM05M002859 ORTHO05M003236 4.1e-55 217.6 157 73.2
Glyma.10G003500 Glycine max HOM05M002859 ORTHO05M003236 5.3e-55 217.2 124 87.1
Potri.004G092400 Populus trichocarpa HOM05M002859 ORTHO05M003236 3.5e-54 214.5 126 85.7
Cre17.g726800 Chlamydomonas reinhardtii HOM05M002859 ORTHO05M003236 9.8e-49 196.4 159 66.0
Misin09G088700 Miscanthus sinensis HOM05M002859 ORTHO05M003236 7.2e-44 180.3 124 71.8
MBI06_g32154_MAGBIO Magnolia biondii HOM05M002859 ORTHO05M003236 3.4e-41 171.4 117 73.5
EJB05_28483 Eragrostis curvula HOM05M002859 ORTHO05M003236 4.1e-39 164.5 106 81.1
EJB05_28493 Eragrostis curvula HOM05M002859 ORTHO05M003236 4.1e-39 164.5 106 81.1
Dexi3A01G0005430 Digitaria exilis HOM05M002859 ORTHO05M003236 2.1e-35 152.1 96 76.0
Dexi3B01G0005400 Digitaria exilis HOM05M002859 ORTHO05M003236 2.1e-35 152.1 96 76.0
Dexi8A01G0007830 Digitaria exilis HOM05M002859 ORTHO05M003236 6.4e-32 140.6 150 54.7
Dexi8B01G0006750 Digitaria exilis HOM05M002859 ORTHO05M003236 1.4e-31 139.4 150 54.0
Sspon.05G0026890-1B Saccharum spontaneum HOM05M002859 ORTHO05M003236 1.3e-29 132.9 98 65.3
Seita.8G082900 Setaria italica HOM05M002859 ORTHO05M003236 1.5e-28 129.4 98 66.3
Sevir.8G084600 Setaria viridis HOM05M002859 ORTHO05M003236 1.5e-28 129.4 98 66.3
Sspon.07G0029860-3D Saccharum spontaneum HOM05M002859 ORTHO05M003236 4.4e-25 117.9 80 72.5
MCO14G229 Micromonas commoda HOM05M002859 ORTHO05M003236 4.3e-20 101.3 192 38.0
AagrBONN_evm.TU.Sc2ySwM_228.2915 Anthoceros agrestis HOM05M002859 ORTHO05M003236 6.0e-14 80.9 49 79.6
PRCOL_00001851 Prasinoderma coloniale HOM05M002859 ORTHO05M003236 1.8e-10 69.3 171 31.6
Sspon.07G0029870-1B Saccharum spontaneum HOM05M002859 ORTHO05M003236 8.9e-10 67.0 38 86.8
Sspon.07G0029870-2C Saccharum spontaneum HOM05M002859 ORTHO05M003236 8.9e-10 67.0 38 86.8
Zjn_sc00028.1.g00610.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM05M002859 ORTHO05M003236 1.2e-06 56.6 133 33.8
Sspon.07G0029860-1B Saccharum spontaneum HOM05M002859 ORTHO05M003236 7.8e-06 53.9 28 89.3


User provided reference genes

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