Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g007450.4 Solanum lycopersicum HOM05M000561 ORTHO05M003873 0.0e+00 1201.4 613 100.0
Potri.010G119700 Populus trichocarpa HOM05M000561 ORTHO05M003873 2.3e-220 768.5 603 68.2
Potri.008G124400 Populus trichocarpa HOM05M000561 ORTHO05M003873 2.3e-212 741.9 602 65.3
Glyma.20G120900 Glycine max HOM05M000561 ORTHO05M003873 1.5e-211 739.2 551 69.3
Solyc09g059670.4 Solanum lycopersicum HOM05M000561 ORTHO05M003873 9.9e-211 736.5 593 66.6
AT1G15060 Arabidopsis thaliana HOM05M000561 ORTHO05M003873 4.9e-210 734.2 539 68.3
evm.TU.AsparagusV1_01.3246.V1.1 Asparagus officinalis HOM05M000561 ORTHO05M003873 5.4e-193 677.6 543 63.7
ATR0681G102 Amborella trichopoda HOM05M000561 ORTHO05M003873 3.3e-190 668.3 613 59.2
p5.00_sc00375_p0007 Elaeis guineensis HOM05M000561 ORTHO05M003873 5.8e-187 657.5 522 64.0
Ma09_g21970 Musa acuminata HOM05M000561 ORTHO05M003873 1.6e-184 649.4 519 63.6
CDE04G0339 Ceratophyllum demersum HOM05M000561 ORTHO05M003873 1.5e-179 632.9 523 62.0
CDE06G1798 Ceratophyllum demersum HOM05M000561 ORTHO05M003873 5.1e-175 617.8 582 57.6
HPP92_021341 Vanilla planifolia HOM05M000561 ORTHO05M003873 3.7e-173 611.7 519 61.1
Horvu_MOREX_3H01G380300 Hordeum vulgare HOM05M000561 ORTHO05M003873 3.4e-171 605.1 527 57.5
OsR498G0101804100.01 Oryza sativa ssp. indica HOM05M000561 ORTHO05M003873 4.5e-171 604.7 529 57.7
EJB05_17350 Eragrostis curvula HOM05M000561 ORTHO05M003873 2.9e-170 602.1 520 58.5
Sobic.003G264800 Sorghum bicolor HOM05M000561 ORTHO05M003873 2.9e-170 602.1 527 57.3
OsKitaake01g287600 Oryza sativa Kitaake HOM05M000561 ORTHO05M003873 4.9e-170 601.3 529 57.3
Os01g0692600 Oryza sativa ssp. japonica HOM05M000561 ORTHO05M003873 4.9e-170 601.3 529 57.3
Bradi2g47140 Brachypodium distachyon HOM05M000561 ORTHO05M003873 1.1e-169 600.1 523 57.6
GWHGASIY015680 Secale cereale HOM05M000561 ORTHO05M003873 3.2e-169 598.6 527 56.7
TraesCS3D03G0607700 Triticum aestivum HOM05M000561 ORTHO05M003873 4.2e-169 598.2 527 56.7
Seita.5G280000 Setaria italica HOM05M000561 ORTHO05M003873 6.1e-168 594.3 519 57.2
PH02Gene45301 Phyllostachys edulis HOM05M000561 ORTHO05M003873 7.9e-168 594.0 521 57.4
AET3Gv20632100 Aegilops tauschii HOM05M000561 ORTHO05M003873 1.8e-167 592.8 524 56.5
Pahal.5G196900 Panicum hallii HOM05M000561 ORTHO05M003873 3.0e-167 592.0 519 57.2
Glyma.10G270400 Glycine max HOM05M000561 ORTHO05M003873 5.1e-167 591.3 549 58.3
TRITD3Bv1G154680 Triticum turgidum HOM05M000561 ORTHO05M003873 1.5e-166 589.7 527 56.4
TraesCS3A03G0664500 Triticum aestivum HOM05M000561 ORTHO05M003873 7.4e-166 587.4 526 56.5
SEGI_33596 Sequoiadendron giganteum HOM05M000561 ORTHO05M003873 3.7e-165 585.1 545 55.6
Zosma06g06670 Zostera marina HOM05M000561 ORTHO05M003873 3.7e-165 585.1 519 56.3
V3.Lp_chr3_0G15112 Lolium perenne HOM05M000561 ORTHO05M003873 6.3e-165 584.3 534 55.4
EJB05_55255 Eragrostis curvula HOM05M000561 ORTHO05M003873 8.2e-165 583.9 550 55.3
Sevir.5G282400 Setaria viridis HOM05M000561 ORTHO05M003873 8.2e-165 583.9 533 55.7
OB01G36480 Oryza brachyantha HOM05M000561 ORTHO05M003873 5.0e-162 574.7 512 56.4
TRIDC3AG038950 Triticum dicoccoides HOM05M000561 ORTHO05M003873 1.6e-160 569.7 509 56.4
TRIDC3BG044100 Triticum dicoccoides HOM05M000561 ORTHO05M003873 2.1e-160 569.3 513 55.9
Sspon.03G0008580-1A Saccharum spontaneum HOM05M000561 ORTHO05M003873 7.4e-158 560.8 524 55.3
Glyma.07G097800 Glycine max HOM05M000561 ORTHO05M003873 5.3e-156 554.7 518 55.4
TraesCS3B03G0758600 Triticum aestivum HOM05M000561 ORTHO05M003873 1.2e-155 553.5 519 54.5
Potri.012G053700 Populus trichocarpa HOM05M000561 ORTHO05M003873 1.3e-154 550.1 524 55.7
Glyma.09G180200 Glycine max HOM05M000561 ORTHO05M003873 3.2e-153 545.4 519 55.5
Zosma03g00950 Zostera marina HOM05M000561 ORTHO05M003873 6.1e-152 541.2 572 50.5
TRITD3Av1G173980 Triticum turgidum HOM05M000561 ORTHO05M003873 2.0e-150 536.2 518 53.3
SMO165G0110 Selaginella moellendorffii HOM05M000561 ORTHO05M003873 1.3e-146 523.5 537 50.1
GWHGAZTO048184 Oryza alta HOM05M000561 ORTHO05M003873 2.9e-146 522.3 517 53.0
Solyc03g118850.4 Solanum lycopersicum HOM05M000561 ORTHO05M003873 5.0e-146 521.5 531 52.2
Seita.6G124200 Setaria italica HOM05M000561 ORTHO05M003873 8.5e-146 520.8 516 53.7
Sevir.6G134000 Setaria viridis HOM05M000561 ORTHO05M003873 8.5e-146 520.8 516 53.7
GWHGAORA044442 Cenchrus purpureus HOM05M000561 ORTHO05M003873 1.5e-145 520.0 629 46.3
Pahal.6G166200 Panicum hallii HOM05M000561 ORTHO05M003873 1.5e-145 520.0 514 53.5
Misin07G327400 Miscanthus sinensis HOM05M000561 ORTHO05M003873 3.2e-145 518.8 517 53.4
Sspon.06G0007500-3D Saccharum spontaneum HOM05M000561 ORTHO05M003873 4.2e-145 518.5 517 53.2
Sspon.06G0007500-2B Saccharum spontaneum HOM05M000561 ORTHO05M003873 7.2e-145 517.7 517 53.2
Sspon.06G0007500-1A Saccharum spontaneum HOM05M000561 ORTHO05M003873 1.2e-144 516.9 517 53.0
GWHGAORA002401 Cenchrus purpureus HOM05M000561 ORTHO05M003873 4.7e-144 515.0 517 53.6
Sobic.007G108400 Sorghum bicolor HOM05M000561 ORTHO05M003873 6.1e-144 514.6 517 52.8
Ot_Chr9_g02458 Oropetium thomaeum HOM05M000561 ORTHO05M003873 1.0e-143 513.8 517 53.2
OB08G20610 Oryza brachyantha HOM05M000561 ORTHO05M003873 1.0e-143 513.8 517 52.0
Zm00007a00001686 Zea mays B104 HOM05M000561 ORTHO05M003873 1.0e-143 513.8 519 53.2
OsKitaake08g128800 Oryza sativa Kitaake HOM05M000561 ORTHO05M003873 1.8e-143 513.1 517 52.2
Os08g0359300 Oryza sativa ssp. japonica HOM05M000561 ORTHO05M003873 1.8e-143 513.1 517 52.2
OsR498G0815885200.01 Oryza sativa ssp. indica HOM05M000561 ORTHO05M003873 3.0e-143 512.3 517 52.2
GWHGAZTO056865 Oryza alta HOM05M000561 ORTHO05M003873 8.8e-143 510.8 492 54.1
Ot_Chr3_g11525 Oropetium thomaeum HOM05M000561 ORTHO05M003873 1.1e-140 503.8 518 51.0
DDU921G0002 Dioscorea dumetorum HOM05M000561 ORTHO05M003873 1.2e-139 500.4 419 61.8
DDU029G0040 Dioscorea dumetorum HOM05M000561 ORTHO05M003873 1.6e-139 500.0 420 61.7
GWHGAZTO094743 Oryza alta HOM05M000561 ORTHO05M003873 5.0e-138 495.0 500 52.0
AagrBONN_evm.TU.Sc2ySwM_368.1681 Anthoceros agrestis HOM05M000561 ORTHO05M003873 4.8e-133 478.4 522 49.6
EJB05_49964 Eragrostis curvula HOM05M000561 ORTHO05M003873 4.5e-131 471.9 551 48.5
CALSI_Maker00040939 Calamus simplicifolius HOM05M000561 ORTHO05M003873 1.2e-128 463.8 600 46.8
AT1G73750 Arabidopsis thaliana HOM05M000561 ORTHO05M003873 1.3e-125 453.8 516 46.3
Pp3c6_12730 Physcomitrium patens HOM05M000561 ORTHO05M003873 1.7e-125 453.4 526 46.4
Sspon.03G0008580-2D Saccharum spontaneum HOM05M000561 ORTHO05M003873 2.3e-122 443.0 443 53.3
GWHGAORA044422 Cenchrus purpureus HOM05M000561 ORTHO05M003873 4.2e-121 438.7 520 47.7
PH02Gene24403 Phyllostachys edulis HOM05M000561 ORTHO05M003873 1.2e-120 437.2 522 46.2
CALSI_Maker00032136 Calamus simplicifolius HOM05M000561 ORTHO05M003873 1.6e-120 436.8 609 44.8
GWHGAORA032004 Cenchrus purpureus HOM05M000561 ORTHO05M003873 1.6e-120 436.8 500 46.8
Zm00001eb156070 Zea mays B73 HOM05M000561 ORTHO05M003873 7.5e-118 427.9 486 49.6
Pp3c8_17160 Physcomitrium patens HOM05M000561 ORTHO05M003873 1.8e-116 423.3 575 42.1
Misin13G095300 Miscanthus sinensis HOM05M000561 ORTHO05M003873 4.7e-112 408.7 519 46.2
Spipo8G0064700 Spirodela polyrhiza HOM05M000561 ORTHO05M003873 4.1e-108 395.6 573 41.4
Asa4G01409 Allium sativum HOM05M000561 ORTHO05M003873 2.7e-107 392.9 435 52.2
Zm00007a00039301 Zea mays B104 HOM05M000561 ORTHO05M003873 1.9e-105 386.7 526 42.6
Bradi3g22010 Brachypodium distachyon HOM05M000561 ORTHO05M003873 4.3e-97 359.0 412 50.2
EJB05_49674 Eragrostis curvula HOM05M000561 ORTHO05M003873 2.2e-93 346.7 509 41.1
Aco006710 Ananas comosus HOM05M000561 ORTHO05M003873 3.5e-91 339.3 328 54.9
CBR_g3157 Chara braunii HOM05M000561 ORTHO05M003873 2.9e-85 319.7 610 35.4
Misin06G228400 Miscanthus sinensis HOM05M000561 ORTHO05M003873 1.1e-84 317.8 327 52.0
Asa4G05642 Allium sativum HOM05M000561 ORTHO05M003873 5.4e-84 315.5 213 70.0
Asa4G05641 Allium sativum HOM05M000561 ORTHO05M003873 9.3e-84 314.7 368 50.3
GWHGAZTO004511 Oryza alta HOM05M000561 ORTHO05M003873 2.5e-81 306.6 486 39.3
PH02Gene06586 Phyllostachys edulis HOM05M000561 ORTHO05M003873 9.6e-81 304.7 381 47.8
MisinT258100 Miscanthus sinensis HOM05M000561 ORTHO05M003873 1.6e-67 260.8 363 42.7
Dexi5A01G0024020 Digitaria exilis HOM05M000561 ORTHO05M003873 7.4e-65 251.9 170 68.2
Dexi5B01G0024260 Digitaria exilis HOM05M000561 ORTHO05M003873 9.6e-65 251.5 170 68.2
MisinT258200 Miscanthus sinensis HOM05M000561 ORTHO05M003873 3.5e-59 233.0 201 57.7
Zm00001eb042900 Zea mays B73 HOM05M000561 ORTHO05M003873 1.8e-58 230.7 320 42.8
Misin06G228600 Miscanthus sinensis HOM05M000561 ORTHO05M003873 1.9e-49 200.7 124 71.0
Zm00007a00005697 Zea mays B104 HOM05M000561 ORTHO05M003873 1.4e-47 194.5 129 69.0
Zm00007a00034901 Zea mays B104 HOM05M000023 ORTHO05M003873 4.5e-46 189.5 138 65.2
Dexi6A01G0011760 Digitaria exilis HOM05M000561 ORTHO05M003873 8.5e-45 185.3 284 40.1
Dexi6B01G0009910 Digitaria exilis HOM05M000561 ORTHO05M003873 1.9e-44 184.1 284 39.8
Zjn_sc00081.1.g00200.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM05M000561 ORTHO05M003873 9.4e-44 181.8 517 27.1
MBI16_g38074_MAGBIO Magnolia biondii HOM05M000561 ORTHO05M003873 6.1e-43 179.1 108 72.2
Zjn_sc00029.1.g02960.1.am.mkhc Zoysia japonica ssp. nagirizaki HOM05M000561 ORTHO05M003873 3.7e-40 169.9 189 48.7
Zm00001eb038480 Zea mays B73 HOM05M000561 ORTHO05M003873 2.0e-38 164.1 106 69.8
Zm00001eb050580 Zea mays B73 HOM05M000561 ORTHO05M003873 3.8e-37 159.8 106 68.9
DDU029G0198 Dioscorea dumetorum HOM05M000561 ORTHO05M003873 1.1e-36 158.3 98 68.4
DDU921G0005 Dioscorea dumetorum HOM05M000561 ORTHO05M003873 1.1e-36 158.3 98 68.4
MBI16_g39816_MAGBIO Magnolia biondii HOM05M000561 ORTHO05M003873 1.6e-35 154.5 91 74.7
Cre10.g451100 Chlamydomonas reinhardtii HOM05M000561 ORTHO05M003873 1.0e-18 98.6 259 30.5
p5.00_sc00008_p0067 Elaeis guineensis HOM05M000561 ORTHO05M003873 2.7e-14 84.0 116 42.2
MCO12G491 Micromonas commoda HOM05M000561 ORTHO05M003873 5.4e-07 59.7 111 27.9


User provided reference genes

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