Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g025930.4 Solanum lycopersicum HOM05M004098 ORTHO05M004913 2.3e-162 574.7 289 100.0
Solyc03g025940.3 Solanum lycopersicum HOM05M004098 ORTHO05M004913 8.7e-101 370.2 317 61.2
Solyc03g025920.4 Solanum lycopersicum HOM05M004098 ORTHO05M004913 2.5e-100 368.6 297 64.0
Glyma.20G157500 Glycine max HOM05M004098 ORTHO05M004913 5.7e-84 314.3 306 53.6
Glyma.10G236900 Glycine max HOM05M004098 ORTHO05M004913 1.8e-82 309.3 299 54.2
Potri.012G137700 Populus trichocarpa HOM05M004098 ORTHO05M004913 3.7e-75 285.0 310 49.7
Potri.015G139700 Populus trichocarpa HOM05M004098 ORTHO05M004913 3.7e-75 285.0 298 51.3
AT3G48880 Arabidopsis thaliana HOM05M004098 ORTHO05M004913 6.5e-72 274.2 298 47.3
MBI18_g44743_MAGBIO Magnolia biondii HOM05M004098 ORTHO05M004913 3.0e-69 265.4 304 45.7
p5.00_sc00187_p0026 Elaeis guineensis HOM05M004098 ORTHO05M004913 1.7e-67 259.6 255 51.4
evm.TU.AsparagusV1_04.785.V1.1 Asparagus officinalis HOM05M004098 ORTHO05M004913 4.8e-67 258.1 305 45.2
Spipo16G0035800 Spirodela polyrhiza HOM05M004098 ORTHO05M004913 4.8e-67 258.1 260 50.4
evm.TU.AsparagusV1_10.1638.V1.1 Asparagus officinalis HOM05M004098 ORTHO05M004913 1.8e-66 256.1 305 45.6
Spipo16G0035700 Spirodela polyrhiza HOM05M004098 ORTHO05M004913 1.8e-66 256.1 260 50.0
DDU407G0270 Dioscorea dumetorum HOM05M004098 ORTHO05M004913 7.0e-66 254.2 306 45.1
CALSI_Maker00000455 Calamus simplicifolius HOM05M004098 ORTHO05M004913 4.5e-65 251.5 255 50.2
CALSI_Maker00023479 Calamus simplicifolius HOM05M004098 ORTHO05M004913 4.5e-65 251.5 255 50.2
Asa1G01849 Allium sativum HOM05M004098 ORTHO05M004913 5.9e-65 251.1 296 44.3
Ma05_g23110 Musa acuminata HOM05M004098 ORTHO05M004913 3.8e-64 248.4 255 49.0
Aco007623 Ananas comosus HOM05M004098 ORTHO05M004913 5.0e-64 248.1 304 42.8
PH02Gene14881 Phyllostachys edulis HOM05M004098 ORTHO05M004913 6.5e-64 247.7 302 42.7
GWHGASIY002151 Secale cereale HOM05M004098 ORTHO05M004913 8.6e-64 247.3 262 45.8
OsR498G1019001400.01 Oryza sativa ssp. indica HOM05M004098 ORTHO05M004913 1.9e-63 246.1 262 46.9
Horvu_MOREX_1H01G286900 Hordeum vulgare HOM05M004098 ORTHO05M004913 2.5e-63 245.7 262 45.8
Seita.9G201100 Setaria italica HOM05M004098 ORTHO05M004913 3.3e-63 245.4 302 43.4
Sevir.9G200300 Setaria viridis HOM05M004098 ORTHO05M004913 3.3e-63 245.4 302 43.4
OsKitaake10g150200 Oryza sativa Kitaake HOM05M004098 ORTHO05M004913 4.2e-63 245.0 262 46.6
OB10G22080 Oryza brachyantha HOM05M004098 ORTHO05M004913 5.5e-63 244.6 262 46.2
GWHGAORA052101 Cenchrus purpureus HOM05M004098 ORTHO05M004913 7.2e-63 244.2 301 42.9
Os10g0502900 Oryza sativa ssp. japonica HOM05M004098 ORTHO05M004913 1.6e-62 243.0 262 46.2
EJB05_23806 Eragrostis curvula HOM05M004098 ORTHO05M004913 2.1e-62 242.7 302 41.4
HPP92_008435 Vanilla planifolia HOM05M004098 ORTHO05M004913 2.8e-62 242.3 305 41.3
EJB05_23836 Eragrostis curvula HOM05M004098 ORTHO05M004913 3.6e-62 241.9 302 41.4
GWHGAZTO009270 Oryza alta HOM05M004098 ORTHO05M004913 3.6e-62 241.9 262 45.8
AET1Gv20434500 Aegilops tauschii HOM05M004098 ORTHO05M004913 4.7e-62 241.5 302 41.4
TraesCS1D03G0425900 Triticum aestivum HOM05M004098 ORTHO05M004913 4.7e-62 241.5 302 41.4
Misin02G171400 Miscanthus sinensis HOM05M004098 ORTHO05M004913 6.1e-62 241.1 302 42.4
Misin01G185100 Miscanthus sinensis HOM05M004098 ORTHO05M004913 8.0e-62 240.7 302 42.4
Sspon.01G0020900-2B Saccharum spontaneum HOM05M004098 ORTHO05M004913 8.0e-62 240.7 302 42.4
Sspon.01G0020900-4D Saccharum spontaneum HOM05M004098 ORTHO05M004913 8.0e-62 240.7 302 42.4
Zm00001eb044180 Zea mays B73 HOM05M004098 ORTHO05M004913 8.0e-62 240.7 302 42.7
Zm00007a00034976 Zea mays B104 HOM05M004098 ORTHO05M004913 8.0e-62 240.7 302 42.7
GWHGAZTO061589 Oryza alta HOM05M004098 ORTHO05M004913 1.0e-61 240.4 262 45.8
TraesCS1A03G0467000 Triticum aestivum HOM05M004098 ORTHO05M004913 1.0e-61 240.4 302 41.1
TRIDC1AG026450 Triticum dicoccoides HOM05M004098 ORTHO05M004913 1.0e-61 240.4 302 41.1
TRIDC1BG031920 Triticum dicoccoides HOM05M004098 ORTHO05M004913 1.0e-61 240.4 302 41.1
TRITD1Av1G111700 Triticum turgidum HOM05M004098 ORTHO05M004913 1.0e-61 240.4 302 41.1
TRITD1Bv1G112560 Triticum turgidum HOM05M004098 ORTHO05M004913 1.0e-61 240.4 302 41.1
V3.Lp_chr2_0G5454 Lolium perenne HOM05M004098 ORTHO05M004913 1.4e-61 240.0 302 41.1
Ma08_g11090 Musa acuminata HOM05M004098 ORTHO05M004913 2.3e-61 239.2 256 48.0
Sobic.001G202266 Sorghum bicolor HOM05M004098 ORTHO05M004913 3.0e-61 238.8 302 41.7
TraesCS1B03G0563000 Triticum aestivum HOM05M004098 ORTHO05M004913 3.0e-61 238.8 294 41.5
Ot_Chr1_g09414 Oropetium thomaeum HOM05M004098 ORTHO05M004913 4.0e-61 238.4 302 41.4
Pahal.9G197900 Panicum hallii HOM05M004098 ORTHO05M004913 4.0e-61 238.4 302 42.1
HPP92_008461 Vanilla planifolia HOM05M004098 ORTHO05M004913 3.4e-60 235.3 232 48.7
DDU876G0003 Dioscorea dumetorum HOM05M004098 ORTHO05M004913 1.4e-58 229.9 299 41.5
DDU914G0104 Dioscorea dumetorum HOM05M004098 ORTHO05M004913 1.4e-58 229.9 299 41.5
Bradi3g30187 Brachypodium distachyon HOM05M004098 ORTHO05M004913 2.4e-58 229.2 254 44.1
Solyc03g096620.3 Solanum lycopersicum HOM05M004098 ORTHO05M004913 6.4e-51 204.5 294 46.3
GWHGAORA018529 Cenchrus purpureus HOM05M004098 ORTHO05M004913 3.0e-48 195.7 192 49.5
Sspon.01G0020900-1A Saccharum spontaneum HOM05M004098 ORTHO05M004913 1.5e-44 183.3 302 35.4
Sspon.01G0020900-3C Saccharum spontaneum HOM05M004098 ORTHO05M004913 1.5e-44 183.3 302 35.4
CALSI_Maker00028931 Calamus simplicifolius HOM05M004098 ORTHO05M004913 8.6e-40 167.5 171 52.0
PH02Gene41174 Phyllostachys edulis HOM05M004098 ORTHO05M004913 2.2e-35 152.9 185 42.7
Solyc03g026410.3 Solanum lycopersicum HOM05M004098 ORTHO05M004913 1.4e-34 150.2 212 46.2
Solyc03g062800.1 Solanum lycopersicum HOM05M004098 ORTHO05M004913 3.1e-29 132.5 84 81.0
Solyc03g062810.1 Solanum lycopersicum HOM05M004098 ORTHO05M004913 1.2e-28 130.6 83 71.1
Solyc03g026400.3 Solanum lycopersicum HOM05M004098 ORTHO05M004913 2.0e-28 129.8 92 72.8
Ma01_g10820 Musa acuminata HOM05M004098 ORTHO05M004913 4.9e-27 125.2 260 32.3
p5.00_sc00423_p0018 Elaeis guineensis HOM05M004098 ORTHO05M004913 2.4e-26 122.9 233 35.6
Glyma.01G100400 Glycine max HOM05M004098 ORTHO05M004913 2.4e-26 122.9 306 31.0
Glyma.02G057300 Glycine max HOM05M004098 ORTHO05M004913 3.2e-26 122.5 306 31.0
Ma01_g10870 Musa acuminata HOM05M004098 ORTHO05M004913 2.7e-25 119.4 215 35.8
MBI18_g45107_MAGBIO Magnolia biondii HOM05M004098 ORTHO05M004913 6.0e-25 118.2 258 34.9
Solyc01g150123.1 Solanum lycopersicum HOM05M004098 ORTHO05M004913 1.5e-23 113.6 148 45.9
Ma07_g25550 Musa acuminata HOM05M004098 ORTHO05M004913 4.0e-21 105.5 196 33.7
p5.00_sc00104_p0058 Elaeis guineensis HOM05M004098 ORTHO05M004913 9.0e-21 104.4 237 27.4
Glyma.15G192600 Glycine max HOM05M004098 ORTHO05M004913 5.8e-20 101.7 258 29.8
HPP92_018672 Vanilla planifolia HOM05M003193 ORTHO05M003525 2.9e-19 99.4 231 31.2
HPP92_018690 Vanilla planifolia HOM05M003193 ORTHO05M003525 1.1e-18 97.4 231 30.7
p5.00_sc00160_p0019 Elaeis guineensis HOM05M007668 ORTHO05M009678 1.4e-18 97.1 277 27.8
Ma05_g02190 Musa acuminata HOM05M003193 ORTHO05M003525 4.2e-18 95.5 257 28.4
AT4G11580 Arabidopsis thaliana HOM05M004098 ORTHO05M004913 5.4e-18 95.1 260 27.7
CALSI_Maker00006637 Calamus simplicifolius HOM05M003193 ORTHO05M003525 5.4e-18 95.1 274 29.6
Ma02_g11820 Musa acuminata HOM05M003193 ORTHO05M003525 7.1e-18 94.7 292 28.4
Glyma.16G140400 Glycine max HOM05M004098 ORTHO05M004913 3.5e-17 92.4 199 32.2
Ma06_g33070 Musa acuminata HOM05M003193 ORTHO05M003525 7.8e-17 91.3 227 29.5
p5.00_sc00079_p0025 Elaeis guineensis HOM05M003193 ORTHO05M003525 1.0e-16 90.9 229 27.9
Ma11_g03280 Musa acuminata HOM05M003193 ORTHO05M003525 5.1e-16 88.6 228 28.1
HPP92_013985 Vanilla planifolia HOM05M003193 ORTHO05M003525 5.1e-16 88.6 225 28.0
Solyc06g009250.2 Solanum lycopersicum HOM05M004098 ORTHO05M004913 3.3e-15 85.9 73 61.6
Ma05_g10320 Musa acuminata HOM05M003193 ORTHO05M003525 4.3e-15 85.5 229 26.6
Ma05_g15080 Musa acuminata HOM05M003193 ORTHO05M003525 4.3e-15 85.5 234 30.8
Ma07_g16580 Musa acuminata HOM05M003193 ORTHO05M003525 4.3e-15 85.5 229 27.1
HPP92_018689 Vanilla planifolia HOM05M003193 ORTHO05M003525 4.3e-15 85.5 255 28.2
Solyc01g015130.1 Solanum lycopersicum HOM05M004098 ORTHO05M004913 9.6e-15 84.3 96 56.2
HPP92_018671 Vanilla planifolia HOM05M003193 ORTHO05M003525 1.6e-14 83.6 254 28.3
Zjn_sc00065.1.g01650.1.am.mk Zoysia japonica ssp. nagirizaki HOM05M003193 ORTHO05M003525 2.1e-14 83.2 264 27.3
p5.00_sc00079_p0029 Elaeis guineensis HOM05M003193 ORTHO05M003525 2.8e-14 82.8 273 26.7
p5.00_sc00079_p0024 Elaeis guineensis HOM05M003193 ORTHO05M003525 3.6e-14 82.4 225 27.6
MBI02_g25002_MAGBIO Magnolia biondii HOM05M003193 ORTHO05M003525 3.6e-14 82.4 258 28.7
p5.00_sc11645_p0001 Elaeis guineensis HOM05M007668 ORTHO05M009678 1.1e-13 80.9 259 27.8
HPP92_012377 Vanilla planifolia HOM05M007668 ORTHO05M009678 1.1e-13 80.9 258 25.6
MBI18_g28203_MAGBIO Magnolia biondii HOM05M003193 ORTHO05M003525 1.8e-13 80.1 202 28.2
HPP92_008441 Vanilla planifolia HOM05M004098 ORTHO05M004913 5.3e-13 78.6 87 43.7
DDU152G0011 Dioscorea dumetorum HOM05M007668 ORTHO05M009678 6.9e-13 78.2 266 27.8
DDU509G0162 Dioscorea dumetorum HOM05M007668 ORTHO05M009678 6.9e-13 78.2 266 27.8
Zm00007a00045755 Zea mays B104 HOM05M003193 ORTHO05M003525 6.9e-13 78.2 262 24.4
Aco009104 Ananas comosus HOM05M007668 ORTHO05M009678 1.2e-12 77.4 257 26.8
HPP92_017711 Vanilla planifolia HOM05M001985 ORTHO05M003525 1.2e-12 77.4 275 26.5
evm.TU.AsparagusV1_03.603.V1.1 Asparagus officinalis HOM05M003193 ORTHO05M003525 1.5e-12 77.0 249 28.5
HPP92_019492 Vanilla planifolia HOM05M003193 ORTHO05M003525 2.0e-12 76.6 264 25.4
Aco005052 Ananas comosus HOM05M003193 ORTHO05M003525 3.4e-12 75.9 235 27.2
Ma04_g36960 Musa acuminata HOM05M003193 ORTHO05M003525 2.9e-11 72.8 199 28.1
GWHGAZTO025037 Oryza alta HOM05M007668 ORTHO05M009678 4.9e-11 72.0 275 25.1
Potri.016G019500 Populus trichocarpa HOM05M003193 ORTHO05M003525 6.4e-11 71.6 230 28.3
HPP92_018691 Vanilla planifolia HOM05M003193 ORTHO05M003525 6.4e-11 71.6 256 27.7
HPP92_018673 Vanilla planifolia HOM05M003193 ORTHO05M003525 4.2e-10 68.9 256 27.3
SMO118G0396 Selaginella moellendorffii HOM05M005172 ORTHO05M006362 5.4e-10 68.6 230 27.0
CALSI_Maker00042256 Calamus simplicifolius HOM05M007668 ORTHO05M009678 7.9e-09 64.7 147 29.3
OsKitaake03g231500 Oryza sativa Kitaake HOM05M007668 ORTHO05M009678 1.0e-08 64.3 279 25.1
Os03g0562200 Oryza sativa ssp. japonica HOM05M007668 ORTHO05M009678 1.0e-08 64.3 279 25.1
Asa1G03037 Allium sativum HOM05M001712 ORTHO05M001726 2.3e-08 63.2 234 25.6
OsR498G0306377600.01 Oryza sativa ssp. indica HOM05M007668 ORTHO05M009678 2.3e-08 63.2 279 25.8
Mapoly0044s0131 Marchantia polymorpha HOM05M001712 ORTHO05M001726 3.9e-08 62.4 241 26.1
HPP92_015686 Vanilla planifolia HOM05M003193 ORTHO05M003525 3.9e-08 62.4 259 25.1
GWHGAZTO075072 Oryza alta HOM05M007668 ORTHO05M009678 5.1e-08 62.0 275 24.0
Spipo15G0015900 Spirodela polyrhiza HOM05M001712 ORTHO05M001726 5.1e-08 62.0 236 23.7
GWHGASIY022443 Secale cereale HOM05M003193 ORTHO05M003525 6.7e-08 61.6 142 31.0
AT4G05497 Arabidopsis thaliana HOM05M000296 ORTHO05M000209 8.7e-08 61.2 232 25.4
DDU550G0650 Dioscorea dumetorum HOM05M003193 ORTHO05M003525 8.7e-08 61.2 246 24.0
Aco002778 Ananas comosus HOM05M001712 ORTHO05M001726 1.5e-07 60.5 233 26.2
Ma04_g40110 Musa acuminata HOM05M007668 ORTHO05M009678 1.5e-07 60.5 138 31.2
Bradi1g45630 Brachypodium distachyon HOM05M001712 ORTHO05M001726 2.5e-07 59.7 245 23.7
Asa7G05754 Allium sativum HOM05M000296 ORTHO05M000209 3.3e-07 59.3 244 22.5
CDE03G0043 Ceratophyllum demersum HOM05M001712 ORTHO05M001726 3.3e-07 59.3 241 24.5
Mapoly0058s0120 Marchantia polymorpha HOM05M001712 ORTHO05M001726 3.3e-07 59.3 240 26.7
GWHGASIY022881 Secale cereale HOM05M001712 ORTHO05M001726 3.3e-07 59.3 248 23.4
AET7Gv20461500 Aegilops tauschii HOM05M001712 ORTHO05M001726 1.3e-06 57.4 245 22.9
Horvu_MOREX_7H01G204700 Hordeum vulgare HOM05M001712 ORTHO05M001726 1.3e-06 57.4 245 22.9
Solyc01g015180.1 Solanum lycopersicum HOM05M004098 ORTHO05M004913 1.3e-06 57.4 73 46.6
TraesCS7A03G0416300 Triticum aestivum HOM05M001712 ORTHO05M001726 1.3e-06 57.4 245 22.9
TraesCS7D03G0405000 Triticum aestivum HOM05M001712 ORTHO05M001726 1.3e-06 57.4 245 22.9
TRIDC7AG022100 Triticum dicoccoides HOM05M001712 ORTHO05M001726 1.3e-06 57.4 245 22.9
TRITD7Av1G057030 Triticum turgidum HOM05M001712 ORTHO05M001726 1.3e-06 57.4 245 22.9
TraesCS7B03G0223800 Triticum aestivum HOM05M001712 ORTHO05M001726 1.6e-06 57.0 245 22.4
TRIDC7BG012470 Triticum dicoccoides HOM05M001712 ORTHO05M001726 1.6e-06 57.0 245 22.4
TRITD7Bv1G033750 Triticum turgidum HOM05M001712 ORTHO05M001726 1.6e-06 57.0 245 22.4
CDE06G0941 Ceratophyllum demersum HOM05M001712 ORTHO05M001726 2.8e-06 56.2 241 25.7
Pahal.6G062300 Panicum hallii HOM05M000296 ORTHO05M000209 4.8e-06 55.5 243 24.3
Dexi9A01G0019030 Digitaria exilis HOM05M004098 ORTHO05M004913 6.2e-06 55.1 114 32.5
V3.Lp_chr7_0.1G2120 Lolium perenne HOM05M001712 ORTHO05M001726 6.2e-06 55.1 239 23.8
GWHGAZTO072504 Oryza alta HOM05M001712 ORTHO05M001726 6.2e-06 55.1 279 22.9
OsKitaake02g339800 Oryza sativa Kitaake HOM05M001712 ORTHO05M001726 6.2e-06 55.1 281 22.8
Os02g0757700 Oryza sativa ssp. japonica HOM05M001712 ORTHO05M001726 6.2e-06 55.1 281 22.8
TRITD3Av1G237130 Triticum turgidum HOM05M000296 ORTHO05M000209 6.2e-06 55.1 262 24.0
HPP92_017740 Vanilla planifolia HOM05M003193 ORTHO05M003525 6.2e-06 55.1 231 26.0


User provided reference genes

Program Settings