Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g007060.3 Solanum lycopersicum HOM05M005062 ORTHO05M005729 2.3e-241 837.8 443 100.0
Solyc06g035440.3 Solanum lycopersicum HOM05M005062 ORTHO05M005729 4.2e-70 268.9 445 45.4
MBI04_g46549_MAGBIO Magnolia biondii HOM05M005062 ORTHO05M005729 1.8e-36 157.1 493 33.5
Potri.003G117800 Populus trichocarpa HOM05M005062 ORTHO05M005729 3.0e-36 156.4 478 33.7
Glyma.17G137100 Glycine max HOM05M005062 ORTHO05M005729 2.8e-34 149.8 513 30.6
DDU002G0178 Dioscorea dumetorum HOM05M005062 ORTHO05M005729 3.1e-33 146.4 410 34.1
Glyma.01G213800 Glycine max HOM05M005062 ORTHO05M005729 5.4e-33 145.6 510 31.2
DDU903G0013 Dioscorea dumetorum HOM05M005062 ORTHO05M005729 7.0e-33 145.2 410 34.1
Glyma.05G054600 Glycine max HOM05M005062 ORTHO05M005729 7.0e-33 145.2 511 31.5
Asa7G04924 Allium sativum HOM05M005062 ORTHO05M005729 3.5e-32 142.9 440 32.3
Glyma.11G028100 Glycine max HOM05M005062 ORTHO05M005729 2.3e-31 140.2 508 31.3
evm.TU.AsparagusV1_04.2683.V1.1 Asparagus officinalis HOM05M005062 ORTHO05M005729 1.1e-30 137.9 426 33.1
Spipo1G0093000 Spirodela polyrhiza HOM05M005062 ORTHO05M005729 7.3e-30 135.2 450 31.6
AT4G22860 Arabidopsis thaliana HOM05M005062 ORTHO05M005729 1.2e-29 134.4 467 31.9
CALSI_Maker00030366 Calamus simplicifolius HOM05M005062 ORTHO05M005729 2.8e-29 133.3 456 30.3
Potri.001G114400 Populus trichocarpa HOM05M005062 ORTHO05M005729 1.8e-28 130.6 496 31.9
Solyc08g079760.4 Solanum lycopersicum HOM05M005062 ORTHO05M005729 3.4e-27 126.3 473 30.9
Aco000011 Ananas comosus HOM05M005062 ORTHO05M005729 4.4e-27 125.9 433 32.1
Glyma.09G152500 Glycine max HOM05M005062 ORTHO05M005729 2.9e-26 123.2 420 32.4
AT4G11990 Arabidopsis thaliana HOM05M005062 ORTHO05M005729 4.1e-25 119.4 405 30.9
MBI12_g34483_MAGBIO Magnolia biondii HOM05M005062 ORTHO05M005729 4.6e-24 115.9 531 29.4
Ma01_g03390 Musa acuminata HOM05M005062 ORTHO05M005729 1.3e-23 114.4 457 30.6
Potri.012G130300 Populus trichocarpa HOM05M005062 ORTHO05M005729 1.1e-22 111.3 423 29.1
Bradi1g49960 Brachypodium distachyon HOM05M005062 ORTHO05M005729 7.5e-19 98.6 419 29.6
CDE06G2158 Ceratophyllum demersum HOM05M005062 ORTHO05M005729 8.3e-18 95.1 552 27.2
Zosma02g15430 Zostera marina HOM05M005062 ORTHO05M005729 8.3e-18 95.1 432 29.6
ATR0757G023 Amborella trichopoda HOM05M003443 ORTHO05M005729 1.9e-17 94.0 513 26.9
AT5G07170 Arabidopsis thaliana HOM05M005062 ORTHO05M005729 2.4e-17 93.6 360 31.4
OB06G11820 Oryza brachyantha HOM05M005062 ORTHO05M005729 3.2e-17 93.2 419 29.6
AET7Gv20158900 Aegilops tauschii HOM05M005062 ORTHO05M005729 4.1e-17 92.8 418 29.4
GWHGASIY022378 Secale cereale HOM05M005062 ORTHO05M005729 5.4e-17 92.4 437 30.2
TRITD4Av1G245210 Triticum turgidum HOM05M005062 ORTHO05M005729 5.4e-17 92.4 436 29.4
Horvu_MOREX_7H01G067900 Hordeum vulgare HOM05M005062 ORTHO05M005729 1.2e-16 91.3 420 30.5
TraesCS4A03G1046400 Triticum aestivum HOM05M005062 ORTHO05M005729 2.1e-16 90.5 436 29.1
TRITD7Av1G016990 Triticum turgidum HOM05M005062 ORTHO05M005729 2.7e-16 90.1 418 29.2
PH02Gene13032 Phyllostachys edulis HOM05M005062 ORTHO05M005729 3.5e-16 89.7 390 30.0
GWHGAZTO085652 Oryza alta HOM05M005062 ORTHO05M005729 1.7e-15 87.4 421 29.7
V3.Lp_chr7_0.1G510 Lolium perenne HOM05M005062 ORTHO05M005729 3.9e-15 86.3 410 29.0
TraesCS7A03G0148900 Triticum aestivum HOM05M005062 ORTHO05M005729 3.9e-15 86.3 426 30.3
CDE02G1272 Ceratophyllum demersum HOM05M005062 ORTHO05M005729 5.1e-15 85.9 507 26.6
GWHGAZTO036747 Oryza alta HOM05M005062 ORTHO05M005729 5.1e-15 85.9 421 28.7
Seita.4G020000 Setaria italica HOM05M005062 ORTHO05M005729 1.1e-14 84.7 393 29.3
PH02Gene14471 Phyllostachys edulis HOM05M005062 ORTHO05M005729 1.5e-14 84.3 424 30.2
OsKitaake06g019800 Oryza sativa Kitaake HOM05M005062 ORTHO05M005729 4.3e-14 82.8 420 28.3
OsR498G0611563200.01 Oryza sativa ssp. indica HOM05M005062 ORTHO05M005729 4.3e-14 82.8 420 28.3
Os06g0130200 Oryza sativa ssp. japonica HOM05M005062 ORTHO05M005729 4.3e-14 82.8 420 28.3
Zjn_sc00067.1.g02090.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM05M005062 ORTHO05M005729 4.3e-14 82.8 388 28.6
GWHGAORA053804 Cenchrus purpureus HOM05M005062 ORTHO05M005729 1.6e-13 80.9 267 32.2
Sspon.08G0016480-2B Saccharum spontaneum HOM05M005062 ORTHO05M005729 1.6e-13 80.9 251 32.3
Sevir.4G019700 Setaria viridis HOM05M005062 ORTHO05M005729 3.6e-13 79.7 432 27.8
CALSI_Maker00047315 Calamus simplicifolius HOM05M005062 ORTHO05M005729 8.1e-13 78.6 294 29.9
GWHGAORA017528 Cenchrus purpureus HOM05M005062 ORTHO05M005729 8.1e-13 78.6 420 27.9
Misin19G021200 Miscanthus sinensis HOM05M005062 ORTHO05M005729 8.1e-13 78.6 435 27.4
p5.00_sc00016_p0072 Elaeis guineensis HOM05M005062 ORTHO05M005729 1.4e-12 77.8 239 32.2
Ot_Chr10_gn30270 Oropetium thomaeum HOM05M005062 ORTHO05M005729 1.4e-12 77.8 423 27.2
p5.00_sc00280_p0005 Elaeis guineensis HOM05M005062 ORTHO05M005729 1.8e-12 77.4 284 30.6
Sobic.010G020700 Sorghum bicolor HOM05M005062 ORTHO05M005729 1.8e-12 77.4 261 31.8
Misin18G014900 Miscanthus sinensis HOM05M005062 ORTHO05M005729 1.5e-11 74.3 429 28.4
Pahal.4G341900 Panicum hallii HOM05M005062 ORTHO05M005729 4.4e-11 72.8 431 28.1
Sspon.08G0023860-1B Saccharum spontaneum HOM05M005062 ORTHO05M005729 5.8e-11 72.4 248 30.2
AT5G62240 Arabidopsis thaliana HOM05M005062 ORTHO05M005729 7.5e-11 72.0 316 27.8
EJB05_46493 Eragrostis curvula HOM05M005062 ORTHO05M005729 7.5e-11 72.0 431 28.5
Sspon.08G0016480-3D Saccharum spontaneum HOM05M005062 ORTHO05M005729 9.9e-11 71.6 246 30.9
TRIDC7AG007110 Triticum dicoccoides HOM05M005062 ORTHO05M005729 2.2e-10 70.5 391 28.6
TRIDC4AG062730 Triticum dicoccoides HOM05M005062 ORTHO05M005729 3.7e-10 69.7 391 28.4
Ma09_g00940 Musa acuminata HOM05M005062 ORTHO05M005729 1.9e-09 67.4 319 29.5
Zm00001eb378330 Zea mays B73 HOM05M005062 ORTHO05M005729 7.1e-09 65.5 390 26.9
Glyma.06G290300 Glycine max HOM05M003443 ORTHO05M003759 9.2e-09 65.1 535 24.9
TraesCS7D03G0137200 Triticum aestivum HOM05M005062 ORTHO05M005729 2.7e-08 63.5 275 30.5
CALSI_Maker00042193 Calamus simplicifolius HOM05M005062 ORTHO05M005729 4.6e-08 62.8 149 36.2
p5.00_sc00053_p0049 Elaeis guineensis HOM05M005062 ORTHO05M005729 7.8e-08 62.0 240 31.2
Asa6G02482 Allium sativum HOM05M003443 ORTHO05M003759 3.0e-07 60.1 475 25.3
Zm00007a00000973 Zea mays B104 HOM05M005062 ORTHO05M005729 3.0e-07 60.1 378 26.2
CALSI_Maker00016615 Calamus simplicifolius HOM05M003443 ORTHO05M003759 6.6e-07 58.9 450 25.6
DDU693G0209 Dioscorea dumetorum HOM05M003443 ORTHO05M003759 6.6e-07 58.9 187 30.5
Solyc12g005480.2 Solanum lycopersicum HOM05M003443 ORTHO05M003759 7.3e-06 55.5 231 29.4


User provided reference genes

Program Settings