Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g078200.4 Solanum lycopersicum HOM05M002624 ORTHO05M002774 6.3e-130 466.8 265 100.0
Glyma.13G179500 Glycine max HOM05M002624 ORTHO05M002774 1.9e-65 252.7 275 65.1
p5.00_sc00166_p0024 Elaeis guineensis HOM05M002624 ORTHO05M002774 4.2e-65 251.5 259 62.5
p5.00_sc00116_p0064 Elaeis guineensis HOM05M002624 ORTHO05M002774 2.1e-64 249.2 253 61.7
Potri.015G095700 Populus trichocarpa HOM05M002624 ORTHO05M002774 6.6e-63 244.2 273 62.3
AT4G30930 Arabidopsis thaliana HOM05M002624 ORTHO05M002774 8.7e-63 243.8 160 76.2
Zm00007a00048132 Zea mays B104 HOM05M002624 ORTHO05M002774 1.3e-61 240.0 145 78.6
DDU244G0015 Dioscorea dumetorum HOM05M002624 ORTHO05M002774 1.6e-61 239.6 261 64.0
Ot_Chr5_gn36240 Oropetium thomaeum HOM05M002624 ORTHO05M002774 2.1e-61 239.2 145 79.3
Sobic.009G228300 Sorghum bicolor HOM05M002624 ORTHO05M002774 2.8e-61 238.8 145 78.6
Pahal.3G185200 Panicum hallii HOM05M002624 ORTHO05M002774 3.6e-61 238.4 145 78.6
Zm00001eb295500 Zea mays B73 HOM05M002624 ORTHO05M002774 3.6e-61 238.4 145 78.6
Asa3G03735 Allium sativum HOM05M002624 ORTHO05M002774 1.4e-60 236.5 256 60.2
Asa3G03736 Allium sativum HOM05M002624 ORTHO05M002774 1.8e-60 236.1 256 60.2
Dexi3B01G0017090 Digitaria exilis HOM05M002624 ORTHO05M002774 3.1e-60 235.3 145 77.2
OB05G33000 Oryza brachyantha HOM05M002624 ORTHO05M002774 3.1e-60 235.3 141 80.9
Misin16G232100 Miscanthus sinensis HOM05M002624 ORTHO05M002774 9.0e-60 233.8 256 60.2
GWHGAZTO036128 Oryza alta HOM05M002624 ORTHO05M002774 1.5e-59 233.0 254 61.4
Zm00001eb343340 Zea mays B73 HOM05M002624 ORTHO05M002774 2.0e-59 232.6 145 76.6
Ma09_g06040 Musa acuminata HOM05M002624 ORTHO05M002774 2.6e-59 232.3 267 61.0
Sspon.07G0002390-2B Saccharum spontaneum HOM05M002624 ORTHO05M002774 2.6e-59 232.3 253 59.7
Spipo14G0028500 Spirodela polyrhiza HOM05M002624 ORTHO05M002774 2.6e-59 232.3 267 60.3
HPP92_024649 Vanilla planifolia HOM05M002624 ORTHO05M002774 2.6e-59 232.3 257 59.9
HPP92_024654 Vanilla planifolia HOM05M002624 ORTHO05M002774 2.6e-59 232.3 257 59.9
Seita.3G150300 Setaria italica HOM05M002624 ORTHO05M002774 3.4e-59 231.9 145 75.9
Sevir.3G153000 Setaria viridis HOM05M002624 ORTHO05M002774 3.4e-59 231.9 145 75.9
GWHGAORA003850 Cenchrus purpureus HOM05M002624 ORTHO05M002774 7.6e-59 230.7 262 62.2
Zm00007a00039393 Zea mays B104 HOM05M002624 ORTHO05M002774 7.6e-59 230.7 256 60.5
OsKitaake05g258900 Oryza sativa Kitaake HOM05M002624 ORTHO05M002774 9.9e-59 230.3 255 60.8
OsR498G0511325400.01 Oryza sativa ssp. indica HOM05M002624 ORTHO05M002774 9.9e-59 230.3 255 60.8
Os05g0557800 Oryza sativa ssp. japonica HOM05M002624 ORTHO05M002774 9.9e-59 230.3 255 60.8
ATR0737G004 Amborella trichopoda HOM05M002624 ORTHO05M002774 1.7e-58 229.6 140 80.7
TRITD1Av1G214460 Triticum turgidum HOM05M002624 ORTHO05M002774 2.2e-58 229.2 268 55.2
GWHGAZTO085062 Oryza alta HOM05M002624 ORTHO05M002774 2.9e-58 228.8 254 60.6
Aco006732 Ananas comosus HOM05M002624 ORTHO05M002774 6.4e-58 227.6 280 58.2
PH02Gene01397 Phyllostachys edulis HOM05M002624 ORTHO05M002774 1.9e-57 226.1 251 59.4
TRIDC1AG057110 Triticum dicoccoides HOM05M002624 ORTHO05M002774 2.4e-57 225.7 164 70.1
AET1Gv20934200 Aegilops tauschii HOM05M002624 ORTHO05M002774 3.2e-57 225.3 157 72.6
TraesCS1D03G0922200 Triticum aestivum HOM05M002624 ORTHO05M002774 3.2e-57 225.3 157 72.6
Horvu_MOREX_1H01G553700 Hordeum vulgare HOM05M002624 ORTHO05M002774 4.2e-57 224.9 162 72.8
TRIDC1BG065730 Triticum dicoccoides HOM05M002624 ORTHO05M002774 4.2e-57 224.9 170 68.2
TraesCS1B03G1120800 Triticum aestivum HOM05M002624 ORTHO05M002774 5.4e-57 224.6 269 54.6
TRITD1Bv1G209280 Triticum turgidum HOM05M002624 ORTHO05M002774 5.4e-57 224.6 269 54.6
CDE08G1028 Ceratophyllum demersum HOM05M002624 ORTHO05M002774 1.2e-56 223.4 269 53.9
TraesCS1A03G0947100 Triticum aestivum HOM05M002624 ORTHO05M002774 1.2e-56 223.4 268 54.9
GWHGASIY004953 Secale cereale HOM05M002624 ORTHO05M002774 3.5e-56 221.9 272 59.6
PH02Gene18393 Phyllostachys edulis HOM05M002624 ORTHO05M002774 7.9e-56 220.7 251 58.2
Bradi2g16970 Brachypodium distachyon HOM05M002624 ORTHO05M002774 1.0e-55 220.3 275 51.6
V3.Lp_chr1_0G17982 Lolium perenne HOM05M002624 ORTHO05M002774 1.8e-55 219.5 252 60.7
Zosma04g08500 Zostera marina HOM05M002624 ORTHO05M002774 4.8e-53 211.5 141 73.0
Sspon.07G0002390-1A Saccharum spontaneum HOM05M002624 ORTHO05M002774 3.1e-52 208.8 125 80.0
Sspon.07G0002390-1P Saccharum spontaneum HOM05M002624 ORTHO05M002774 9.0e-52 207.2 124 79.8
MBI06_g04175_MAGBIO Magnolia biondii HOM05M002624 ORTHO05M002774 1.5e-51 206.5 333 50.8
CALSI_Maker00029155 Calamus simplicifolius HOM05M002624 ORTHO05M002774 3.8e-50 201.8 312 47.8
EJB05_54035 Eragrostis curvula HOM05M002624 ORTHO05M002774 7.4e-46 187.6 107 84.1
GWHGAORA038795 Cenchrus purpureus HOM05M002624 ORTHO05M002774 1.1e-44 183.7 107 81.3
Glyma.07G196700 Glycine max HOM05M002624 ORTHO05M002774 7.6e-43 177.6 269 53.5
Mapoly0034s0066 Marchantia polymorpha HOM05M002624 ORTHO05M002774 8.4e-42 174.1 130 67.7
Pp3c3_5690 Physcomitrium patens HOM05M002624 ORTHO05M002774 3.2e-41 172.2 164 56.7
CDE02G1739 Ceratophyllum demersum HOM05M003158 ORTHO05M003712 1.2e-40 170.2 103 79.6
SEGI_14558 Sequoiadendron giganteum HOM05M002624 ORTHO05M002774 1.2e-40 170.2 132 64.4
Dexi3A01G0016680 Digitaria exilis HOM05M002629 ORTHO05M002864 7.4e-38 161.0 211 55.9
Zjn_sc00027.1.g02090.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM05M002624 ORTHO05M002774 1.6e-37 159.8 251 47.0
CALSI_Maker00007286 Calamus simplicifolius HOM05M002624 ORTHO05M002774 3.7e-37 158.7 228 56.1
SMO117G0017 Selaginella moellendorffii HOM05M002624 ORTHO05M002774 9.0e-36 154.1 149 53.0
MisinT372500 Miscanthus sinensis HOM05M002624 ORTHO05M002774 6.5e-34 147.9 211 53.1
Zjn_sc00012.1.g01950.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM05M002624 ORTHO05M002774 1.8e-28 129.8 229 48.9
CALSI_Maker00046690 Calamus simplicifolius HOM05M002624 ORTHO05M002774 2.0e-27 126.3 120 55.0
p5.00_sc00001_p0354 Elaeis guineensis HOM05M002624 ORTHO05M002774 2.0e-27 126.3 120 55.8
Solyc06g065390.4 Solanum lycopersicum HOM05M002624 ORTHO05M002774 3.4e-27 125.6 159 43.4
Aco004388 Ananas comosus HOM05M002624 ORTHO05M002774 4.5e-27 125.2 160 46.9
evm.TU.AsparagusV1_05.1960.V1.1 Asparagus officinalis HOM05M002624 ORTHO05M002774 5.9e-27 124.8 73 86.3
evm.TU.AsparagusV1_08.1780.V1.1 Asparagus officinalis HOM05M002624 ORTHO05M002774 1.0e-26 124.0 73 84.9
Aco003197 Ananas comosus HOM05M002624 ORTHO05M002774 1.3e-26 123.6 71 83.1
Zosma02g04830 Zostera marina HOM05M002624 ORTHO05M002774 5.0e-26 121.7 116 56.0
CDE02G3988 Ceratophyllum demersum HOM05M002624 ORTHO05M002774 6.5e-26 121.3 222 36.0
ATR0709G076 Amborella trichopoda HOM05M002624 ORTHO05M002774 1.4e-25 120.2 108 55.6
Potri.019G083400 Populus trichocarpa HOM05M002624 ORTHO05M002774 1.4e-25 120.2 108 53.7
Ma08_g21210 Musa acuminata HOM05M002624 ORTHO05M002774 2.5e-25 119.4 108 54.6
Spipo4G0103400 Spirodela polyrhiza HOM05M002624 ORTHO05M002774 7.2e-25 117.9 115 53.0
CDE08G1114 Ceratophyllum demersum HOM05M002624 ORTHO05M002774 2.1e-24 116.3 138 47.1
Potri.013G112900 Populus trichocarpa HOM05M002624 ORTHO05M002774 2.7e-24 115.9 108 52.8
HPP92_023973 Vanilla planifolia HOM05M002624 ORTHO05M002774 4.7e-24 115.2 109 54.1
V3.Lp_chr7_0.1G8162 Lolium perenne HOM05M002624 ORTHO05M002774 7.9e-24 114.4 115 52.2
Bradi3g09730 Brachypodium distachyon HOM05M002624 ORTHO05M002774 1.0e-23 114.0 114 52.6
Horvu_MOREX_6H01G265800 Hordeum vulgare HOM05M002624 ORTHO05M002774 1.4e-23 113.6 115 50.4
GWHGASIY031826 Secale cereale HOM05M002624 ORTHO05M002774 1.4e-23 113.6 115 50.4
AET6Gv20468300 Aegilops tauschii HOM05M002624 ORTHO05M002774 1.8e-23 113.2 115 50.4
TraesCS6A03G0489800 Triticum aestivum HOM05M002624 ORTHO05M002774 1.8e-23 113.2 115 50.4
TraesCS6B03G0593900 Triticum aestivum HOM05M002624 ORTHO05M002774 1.8e-23 113.2 115 50.4
TraesCS6D03G0393400 Triticum aestivum HOM05M002624 ORTHO05M002774 1.8e-23 113.2 115 50.4
TRIDC6AG028580 Triticum dicoccoides HOM05M002624 ORTHO05M002774 1.8e-23 113.2 115 50.4
TRIDC6BG035100 Triticum dicoccoides HOM05M002624 ORTHO05M002774 1.8e-23 113.2 115 50.4
TRITD6Av1G096730 Triticum turgidum HOM05M002624 ORTHO05M002774 1.8e-23 113.2 115 50.4
TRITD6Bv1G092510 Triticum turgidum HOM05M002624 ORTHO05M002774 1.8e-23 113.2 115 50.4
evm.TU.AsparagusV1_08.1853.V1.1 Asparagus officinalis HOM05M002624 ORTHO05M002774 3.0e-23 112.5 100 57.0
AT1G35680 Arabidopsis thaliana HOM05M002624 ORTHO05M002774 5.1e-23 111.7 141 42.6
OB02G19990 Oryza brachyantha HOM05M002624 ORTHO05M002774 5.1e-23 111.7 115 50.4
EJB05_25129 Eragrostis curvula HOM05M002624 ORTHO05M002774 6.7e-23 111.3 114 50.9
EJB05_25165 Eragrostis curvula HOM05M002624 ORTHO05M002774 6.7e-23 111.3 114 50.9
Misin08G111700 Miscanthus sinensis HOM05M002624 ORTHO05M002774 6.7e-23 111.3 114 50.9
Pahal.1G117900 Panicum hallii HOM05M002624 ORTHO05M002774 6.7e-23 111.3 114 50.9
PH02Gene43429 Phyllostachys edulis HOM05M002624 ORTHO05M002774 6.7e-23 111.3 115 50.4
Sobic.004G116100 Sorghum bicolor HOM05M002624 ORTHO05M002774 6.7e-23 111.3 114 50.9
Zm00001eb204010 Zea mays B73 HOM05M002624 ORTHO05M002774 6.7e-23 111.3 114 50.9
Zm00001eb237980 Zea mays B73 HOM05M002624 ORTHO05M002774 6.7e-23 111.3 114 50.9
Zjn_sc00138.1.g00460.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM05M002624 ORTHO05M002774 6.7e-23 111.3 114 50.9
GWHGAORA016101 Cenchrus purpureus HOM05M002624 ORTHO05M002774 8.8e-23 110.9 162 40.7
Misin07G112200 Miscanthus sinensis HOM05M002624 ORTHO05M002774 8.8e-23 110.9 114 50.9
Sspon.04G0013790-2B Saccharum spontaneum HOM05M002624 ORTHO05M002774 8.8e-23 110.9 114 50.9
GWHGAORA016106 Cenchrus purpureus HOM05M002624 ORTHO05M002774 1.1e-22 110.5 115 49.6
GWHGAZTO017547 Oryza alta HOM05M002624 ORTHO05M002774 1.1e-22 110.5 115 50.4
OsKitaake02g113600 Oryza sativa Kitaake HOM05M002624 ORTHO05M002774 1.1e-22 110.5 115 50.4
OsR498G0203362800.01 Oryza sativa ssp. indica HOM05M002624 ORTHO05M002774 1.1e-22 110.5 115 50.4
Os02g0259600 Oryza sativa ssp. japonica HOM05M002624 ORTHO05M002774 1.1e-22 110.5 115 50.4
Dexi1A01G0011340 Digitaria exilis HOM05M002624 ORTHO05M002774 1.5e-22 110.2 114 50.0
Seita.1G012400 Setaria italica HOM05M002624 ORTHO05M002774 1.5e-22 110.2 114 50.0
Sevir.1G012300 Setaria viridis HOM05M002624 ORTHO05M002774 1.5e-22 110.2 114 50.0
PH02Gene21181 Phyllostachys edulis HOM05M002624 ORTHO05M002774 2.0e-22 109.8 115 49.6
Asa3G02702 Allium sativum HOM05M002624 ORTHO05M002774 5.7e-22 108.2 94 55.3
Ot_Chr1_g19078 Oropetium thomaeum HOM05M002624 ORTHO05M002774 7.4e-22 107.8 107 50.5
Glyma.20G175300 Glycine max HOM05M002624 ORTHO05M002774 2.8e-21 105.9 159 42.1
Glyma.10G216700 Glycine max HOM05M002624 ORTHO05M002774 8.2e-21 104.4 110 48.2
PRCOL_00000003 Prasinoderma coloniale HOM05M002624 ORTHO05M002774 1.1e-20 104.0 131 45.0
Cre09.g388550 Chlamydomonas reinhardtii HOM05M002624 ORTHO05M002774 2.4e-20 102.8 108 46.3
Zm00007a00014193 Zea mays B104 HOM05M002624 ORTHO05M002774 1.5e-19 100.1 114 48.2
Sspon.04G0013790-4D Saccharum spontaneum HOM05M002624 ORTHO05M002774 2.0e-19 99.8 114 48.2
Zm00007a00027300 Zea mays B104 HOM05M002624 ORTHO05M002774 4.5e-19 98.6 114 47.4
Sspon.04G0013790-1A Saccharum spontaneum HOM05M002624 ORTHO05M002774 5.9e-19 98.2 114 47.4
Sspon.04G0013790-3C Saccharum spontaneum HOM05M002624 ORTHO05M002774 5.9e-19 98.2 114 47.4
MCO01G656 Micromonas commoda HOM05M002624 ORTHO05M002774 8.0e-16 87.8 98 48.0
GWHGAORA059111 Cenchrus purpureus HOM05M002624 ORTHO05M002774 1.4e-15 87.0 114 44.7
DDU445G0107 Dioscorea dumetorum HOM05M002624 ORTHO05M002774 3.0e-15 85.9 77 54.5
GWHGAORA059105 Cenchrus purpureus HOM05M002624 ORTHO05M002774 5.2e-15 85.1 91 51.6
CBR_g3979 Chara braunii HOM05M017664 ORTHO05M002774 6.7e-15 84.7 57 77.2
Dexi1B01G0010710 Digitaria exilis HOM05M002624 ORTHO05M002774 4.4e-14 82.0 82 52.4
GWHGAZTO069242 Oryza alta HOM05M002624 ORTHO05M002774 9.7e-14 80.9 87 50.6
TRIDC4AG027970 Triticum dicoccoides HOM05M002624 ORTHO05M002774 1.1e-09 67.4 51 58.8
Cre06.g299000 Chlamydomonas reinhardtii HOM05M002624 ORTHO05M002774 4.2e-09 65.5 101 35.6
MCO11G349 Micromonas commoda HOM05M002624 ORTHO05M002774 1.2e-08 63.9 100 33.0
Zm00001eb165970 Zea mays B73 HOM05M002624 ORTHO05M002774 8.0e-08 61.2 36 75.0
AagrBONN_evm.TU.Sc2ySwM_368.1780 Anthoceros agrestis HOM05M002624 ORTHO05M002774 1.0e-07 60.8 67 44.8


User provided reference genes

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