Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g068580.1 Solanum lycopersicum HOM05M004004 ORTHO05M004812 1.4e-262 908.3 469 100.0
Potri.013G068200 Populus trichocarpa HOM05M004004 ORTHO05M004812 1.3e-154 549.7 461 61.0
Glyma.02G250900 Glycine max HOM05M004004 ORTHO05M004812 1.4e-143 513.1 463 57.9
Glyma.14G065800 Glycine max HOM05M004004 ORTHO05M004812 1.1e-142 510.0 463 57.7
AT5G56740 Arabidopsis thaliana HOM05M004004 ORTHO05M004812 8.0e-136 487.3 462 52.6
MBI04_g06995_MAGBIO Magnolia biondii HOM05M004004 ORTHO05M004812 7.7e-123 444.1 457 51.4
Ma09_g05820 Musa acuminata HOM05M004004 ORTHO05M004812 4.4e-118 428.3 455 49.5
Aco005645 Ananas comosus HOM05M004004 ORTHO05M004812 5.7e-118 427.9 455 47.9
HPP92_009085 Vanilla planifolia HOM05M004004 ORTHO05M004812 1.5e-113 413.3 458 48.5
evm.TU.AsparagusV1_05.2666.V1.1 Asparagus officinalis HOM05M004004 ORTHO05M004812 1.5e-110 403.3 459 47.5
OB09G14340 Oryza brachyantha HOM05M004004 ORTHO05M004812 2.2e-109 399.4 451 47.0
OsKitaake09g065600 Oryza sativa Kitaake HOM05M004004 ORTHO05M004812 2.9e-109 399.1 455 47.0
Os09g0347800 Oryza sativa ssp. japonica HOM05M004004 ORTHO05M004812 2.9e-109 399.1 455 47.0
OsR498G0917211500.01 Oryza sativa ssp. indica HOM05M004004 ORTHO05M004812 3.7e-109 398.7 455 46.8
PH02Gene47909 Phyllostachys edulis HOM05M004004 ORTHO05M004812 3.7e-109 398.7 451 46.6
GWHGAZTO050941 Oryza alta HOM05M004004 ORTHO05M004812 8.3e-109 397.5 451 47.2
Spipo14G0015500 Spirodela polyrhiza HOM05M004004 ORTHO05M004812 4.1e-108 395.2 444 47.3
DDU353G0017 Dioscorea dumetorum HOM05M004004 ORTHO05M004812 1.2e-107 393.7 471 46.9
GWHGAZTO097366 Oryza alta HOM05M004004 ORTHO05M004812 1.2e-107 393.7 453 47.5
Asa6G00435 Allium sativum HOM05M004004 ORTHO05M004812 1.6e-107 393.3 458 46.5
EJB05_42699 Eragrostis curvula HOM05M004004 ORTHO05M004812 2.0e-107 392.9 456 46.7
PH02Gene39628 Phyllostachys edulis HOM05M004004 ORTHO05M004812 2.0e-107 392.9 459 46.8
EJB05_42736 Eragrostis curvula HOM05M004004 ORTHO05M004812 4.6e-107 391.7 456 46.7
Bradi4g28490 Brachypodium distachyon HOM05M004004 ORTHO05M004812 2.3e-106 389.4 457 46.8
Seita.2G183200 Setaria italica HOM05M004004 ORTHO05M004812 1.1e-105 387.1 450 46.4
CALSI_Maker00026814 Calamus simplicifolius HOM05M004004 ORTHO05M004812 3.3e-105 385.6 483 45.5
CALSI_Maker00043157 Calamus simplicifolius HOM05M004004 ORTHO05M004812 3.3e-105 385.6 483 45.5
CALSI_Maker00028894 Calamus simplicifolius HOM05M004004 ORTHO05M004812 4.3e-105 385.2 482 45.6
Pahal.2G238000 Panicum hallii HOM05M004004 ORTHO05M004812 5.6e-105 384.8 454 45.2
Sspon.02G0016190-3D Saccharum spontaneum HOM05M004004 ORTHO05M004812 1.2e-104 383.6 446 46.4
TraesCS5A03G0493000 Triticum aestivum HOM05M004004 ORTHO05M004812 3.6e-104 382.1 462 45.5
TRIDC5BG032080 Triticum dicoccoides HOM05M004004 ORTHO05M004812 3.6e-104 382.1 462 46.3
TRITD5Av1G135670 Triticum turgidum HOM05M004004 ORTHO05M004812 3.6e-104 382.1 462 45.5
TRIDC5AG030490 Triticum dicoccoides HOM05M004004 ORTHO05M004812 4.7e-104 381.7 449 46.3
Ot_Chr2_g05880 Oropetium thomaeum HOM05M004004 ORTHO05M004812 6.2e-104 381.3 449 45.4
GWHGASIY025944 Secale cereale HOM05M004004 ORTHO05M004812 6.2e-104 381.3 462 45.7
GWHGASIY043673 Secale cereale HOM05M004004 ORTHO05M004812 6.2e-104 381.3 462 45.7
TraesCS5D03G0458900 Triticum aestivum HOM05M004004 ORTHO05M004812 6.2e-104 381.3 462 46.1
Misin03G147800 Miscanthus sinensis HOM05M004004 ORTHO05M004812 8.0e-104 380.9 459 44.4
TraesCS5B03G0495500 Triticum aestivum HOM05M004004 ORTHO05M004812 1.1e-103 380.6 462 46.1
TRITD5Bv1G114610 Triticum turgidum HOM05M004004 ORTHO05M004812 1.1e-103 380.6 462 46.1
GWHGAORA064951 Cenchrus purpureus HOM05M004004 ORTHO05M004812 2.3e-103 379.4 462 44.2
Sobic.002G177700 Sorghum bicolor HOM05M004004 ORTHO05M004812 3.1e-103 379.0 460 45.2
DDU613G0342 Dioscorea dumetorum HOM05M004004 ORTHO05M004812 4.0e-103 378.6 541 41.4
Horvu_MOREX_5H01G318000 Hordeum vulgare HOM05M004004 ORTHO05M004812 4.4e-102 375.2 463 44.9
V3.Lp_chr4_0G24158 Lolium perenne HOM05M004004 ORTHO05M004812 5.8e-102 374.8 457 45.7
Zm00001eb310550 Zea mays B73 HOM05M004004 ORTHO05M004812 2.9e-101 372.5 452 45.8
Sspon.02G0016190-2B Saccharum spontaneum HOM05M004004 ORTHO05M004812 3.7e-101 372.1 477 44.0
Pahal.2G238200 Panicum hallii HOM05M004004 ORTHO05M004812 1.1e-100 370.5 446 44.6
GWHGASIY042179 Secale cereale HOM05M004004 ORTHO05M004812 1.0e-98 364.0 460 45.2
Sevir.2G190500 Setaria viridis HOM05M004004 ORTHO05M004812 3.1e-95 352.4 425 45.4
AET5Gv20466500 Aegilops tauschii HOM05M004004 ORTHO05M004812 3.4e-94 349.0 425 45.9
CALSI_Maker00000312 Calamus simplicifolius HOM05M004004 ORTHO05M004812 7.5e-94 347.8 390 49.0
Dexi2B01G0014710 Digitaria exilis HOM05M004004 ORTHO05M004812 9.9e-94 347.4 459 44.0
ATR0705G179 Amborella trichopoda HOM05M004004 ORTHO05M004812 3.2e-92 342.4 429 44.3
Pahal.2G238800 Panicum hallii HOM05M004004 ORTHO05M004812 7.1e-92 341.3 445 42.9
CALSI_Maker00009772 Calamus simplicifolius HOM05M004004 ORTHO05M004812 5.1e-90 335.1 449 41.2
Zm00007a00047472 Zea mays B104 HOM05M004004 ORTHO05M004812 2.5e-89 332.8 469 42.6
Misin04G163200 Miscanthus sinensis HOM05M004004 ORTHO05M004812 8.9e-87 324.3 487 41.1
Asa0G04940 Allium sativum HOM05M004004 ORTHO05M004812 3.2e-84 315.8 324 50.6
GWHGAORA008393 Cenchrus purpureus HOM05M004004 ORTHO05M004812 8.1e-80 301.2 315 49.8
SEGI_34717 Sequoiadendron giganteum HOM05M004004 ORTHO05M004812 8.1e-80 301.2 484 36.6
GWHGAORA008325 Cenchrus purpureus HOM05M004004 ORTHO05M004812 1.5e-78 297.0 465 38.7
Zosma06g24640 Zostera marina HOM05M004004 ORTHO05M004812 4.4e-78 295.4 438 38.1
Dexi2A01G0015680 Digitaria exilis HOM05M004004 ORTHO05M004812 5.8e-78 295.0 448 39.7
Pahal.2G238500 Panicum hallii HOM05M004004 ORTHO05M004812 2.3e-74 283.1 387 42.4
CDE09G1011 Ceratophyllum demersum HOM05M004004 ORTHO05M004812 5.1e-74 282.0 435 37.0
Zosma01g22860 Zostera marina HOM05M004004 ORTHO05M004812 5.1e-74 282.0 450 36.9
Misin04G163000 Miscanthus sinensis HOM05M004004 ORTHO05M004812 5.6e-73 278.5 288 51.4
CALSI_Maker00033605 Calamus simplicifolius HOM05M004004 ORTHO05M004812 7.4e-65 251.5 301 45.2
Pp3c15_19200 Physcomitrium patens HOM05M004004 ORTHO05M004812 7.6e-62 241.5 497 32.2
Sspon.02G0016190-1A Saccharum spontaneum HOM05M004004 ORTHO05M004812 4.9e-61 238.8 281 45.6
Mapoly0079s0005 Marchantia polymorpha HOM05M004004 ORTHO05M004812 6.7e-58 228.4 514 31.3
Zm00007a00029897 Zea mays B104 HOM05M004004 ORTHO05M004812 1.9e-52 210.3 278 42.4
MBI14_g43979_MAGBIO Magnolia biondii HOM05M004004 ORTHO05M004812 1.2e-46 191.0 192 51.6
CBR_g45363 Chara braunii HOM05M004004 ORTHO05M004812 1.7e-40 170.6 392 29.8
Zjn_sc00018.1.g05470.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM05M004004 ORTHO05M004812 6.9e-39 165.2 217 41.5
Sspon.02G0016330-1A Saccharum spontaneum HOM05M004004 ORTHO05M004812 2.6e-38 163.3 206 41.3
Zm00001eb171070 Zea mays B73 HOM05M004004 ORTHO05M004812 2.6e-38 163.3 161 50.9
Zm00007a00004846 Zea mays B104 HOM05M004004 ORTHO05M004812 2.6e-38 163.3 161 50.9
Zm00001eb301910 Zea mays B73 HOM05M004004 ORTHO05M004812 1.0e-37 161.4 161 50.3
Zm00007a00031179 Zea mays B104 HOM05M004004 ORTHO05M004812 6.3e-32 142.1 153 47.1
PRCOL_00004982 Prasinoderma coloniale HOM05M004004 ORTHO05M004812 2.6e-30 136.7 435 25.5
Zm00007a00016627 Zea mays B104 HOM05M004004 ORTHO05M004812 3.8e-29 132.9 153 44.4
MCO15G657 Micromonas commoda HOM05M004004 ORTHO05M004812 8.5e-29 131.7 449 24.3
Cre03.g186500 Chlamydomonas reinhardtii HOM05M004004 ORTHO05M004812 2.0e-22 110.5 275 29.8
SMO281G0026 Selaginella moellendorffii HOM05M004004 ORTHO05M004812 2.8e-16 90.1 116 40.5
SMO244G0078 Selaginella moellendorffii HOM05M004004 ORTHO05M004812 4.5e-14 82.8 170 32.9
Zm00001eb382850 Zea mays B73 HOM05M004004 ORTHO05M004812 4.0e-10 69.7 88 44.3
Zm00001eb383990 Zea mays B73 HOM05M004004 ORTHO05M004812 6.8e-10 68.9 88 44.3
Zm00007a00028316 Zea mays B104 HOM05M004004 ORTHO05M004812 8.8e-10 68.6 67 53.7


User provided reference genes

Program Settings