Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g105800.4 Solanum lycopersicum HOM05M000041 ORTHO05M250219 8.2e-69 263.1 157 100.0
Potri.017G044500 Populus trichocarpa HOM05M000041 ORTHO05M000012 1.0e-15 86.7 163 37.4
Potri.017G044200 Populus trichocarpa HOM05M000041 ORTHO05M000012 6.8e-15 84.0 139 39.6
Zosma03g19850 Zostera marina HOM05M000041 ORTHO05M000012 9.8e-14 80.1 166 36.7
CDE10G1031 Ceratophyllum demersum HOM05M000041 ORTHO05M000012 2.2e-13 79.0 162 37.0
CDE10G1272 Ceratophyllum demersum HOM05M000041 ORTHO05M000012 2.9e-13 78.6 164 41.5
Potri.007G010800 Populus trichocarpa HOM05M000041 ORTHO05M000012 4.9e-13 77.8 166 34.9
Potri.007G115100 Populus trichocarpa HOM05M000041 ORTHO05M000012 6.4e-13 77.4 148 36.5
MBI06_g07363_MAGBIO Magnolia biondii HOM05M000041 ORTHO05M000012 8.3e-13 77.0 170 35.9
Solyc04g076280.4 Solanum lycopersicum HOM05M000041 ORTHO05M000012 8.3e-13 77.0 158 36.7
Potri.007G115200 Populus trichocarpa HOM05M000041 ORTHO05M000012 1.1e-12 76.6 166 36.7
Aco004028 Ananas comosus HOM05M000041 ORTHO05M000012 2.4e-12 75.5 168 36.9
Aco027879 Ananas comosus HOM05M000041 ORTHO05M000012 2.4e-12 75.5 168 36.9
AT2G22540 Arabidopsis thaliana HOM05M000041 ORTHO05M000012 5.4e-12 74.3 103 40.8
Asa0G05496 Allium sativum HOM05M000041 ORTHO05M000012 9.2e-12 73.6 159 34.6
Glyma.01G023500 Glycine max HOM05M000041 ORTHO05M000012 1.6e-11 72.8 166 31.9
Potri.002G105600 Populus trichocarpa HOM05M000041 ORTHO05M000012 2.0e-11 72.4 166 32.5
Glyma.08G068200 Glycine max HOM05M000041 ORTHO05M000012 2.7e-11 72.0 155 36.8
DDU539G0068 Dioscorea dumetorum HOM05M000041 ORTHO05M000012 4.6e-11 71.2 163 35.0
DDU541G0007 Dioscorea dumetorum HOM05M000041 ORTHO05M000012 4.6e-11 71.2 163 35.0
DDU833G0011 Dioscorea dumetorum HOM05M000041 ORTHO05M000012 4.6e-11 71.2 163 35.0
DDU835G0032 Dioscorea dumetorum HOM05M000041 ORTHO05M000012 4.6e-11 71.2 163 35.0
Potri.007G115000 Populus trichocarpa HOM05M000041 ORTHO05M000012 7.8e-11 70.5 155 34.2
p5.00_sc00031_p0089 Elaeis guineensis HOM05M000041 ORTHO05M000012 1.0e-10 70.1 164 32.3
Glyma.13G256900 Glycine max HOM05M000041 ORTHO05M000012 1.3e-10 69.7 107 43.9
Glyma.02G041500 Glycine max HOM05M000041 ORTHO05M000012 3.9e-10 68.2 161 34.2
Glyma.07G181600 Glycine max HOM05M000041 ORTHO05M000012 5.0e-10 67.8 158 35.4
Solyc11g010570.2 Solanum lycopersicum HOM05M000041 ORTHO05M000012 5.0e-10 67.8 109 37.6
OsKitaake02g341900 Oryza sativa Kitaake HOM05M000041 ORTHO05M000012 1.1e-09 66.6 164 32.3
Os02g0761000 Oryza sativa ssp. japonica HOM05M000041 ORTHO05M000012 1.1e-09 66.6 164 32.3
AT4G24540 Arabidopsis thaliana HOM05M000041 ORTHO05M000012 1.5e-09 66.2 149 34.2
Seita.4G077200 Setaria italica HOM05M000041 ORTHO05M000012 1.9e-09 65.9 165 32.7
GWHGAORA053098 Cenchrus purpureus HOM05M000041 ORTHO05M000012 3.3e-09 65.1 165 32.7
GWHGAZTO020920 Oryza alta HOM05M000041 ORTHO05M000012 3.3e-09 65.1 166 31.3
GWHGAZTO072527 Oryza alta HOM05M000041 ORTHO05M000012 3.3e-09 65.1 165 33.3
Sobic.001G478400 Sorghum bicolor HOM05M000041 ORTHO05M000012 3.3e-09 65.1 168 32.1
CALSI_Maker00022122 Calamus simplicifolius HOM05M000041 ORTHO05M000012 4.3e-09 64.7 107 37.4
OsR498G0204817100.01 Oryza sativa ssp. indica HOM05M000041 ORTHO05M000012 4.3e-09 64.7 165 33.3
Sevir.4G075400 Setaria viridis HOM05M000041 ORTHO05M000012 4.3e-09 64.7 165 32.1
Aco002729 Ananas comosus HOM05M000041 ORTHO05M000012 5.6e-09 64.3 163 34.4
Zm00007a00032928 Zea mays B104 HOM05M000041 ORTHO05M000012 5.6e-09 64.3 164 34.1
EJB05_20131 Eragrostis curvula HOM05M000041 ORTHO05M000012 7.3e-09 63.9 164 31.7
Ot_Chr1_g04290 Oropetium thomaeum HOM05M000041 ORTHO05M000012 7.3e-09 63.9 165 32.7
Seita.1G328500 Setaria italica HOM05M000041 ORTHO05M000012 7.3e-09 63.9 164 31.7
Sevir.1G335300 Setaria viridis HOM05M000041 ORTHO05M000012 7.3e-09 63.9 164 31.7
Spipo4G0015100 Spirodela polyrhiza HOM05M000041 ORTHO05M000012 7.3e-09 63.9 95 43.2
Glyma.15G058000 Glycine max HOM05M000041 ORTHO05M000012 9.5e-09 63.5 157 34.4
GWHGAZTO086380 Oryza alta HOM05M000041 ORTHO05M000012 9.5e-09 63.5 166 29.5
Bradi3g58220 Brachypodium distachyon HOM05M000041 ORTHO05M000012 1.2e-08 63.2 165 32.1
Pahal.4G254500 Panicum hallii HOM05M000041 ORTHO05M000012 1.2e-08 63.2 165 32.1
Potri.005G155300 Populus trichocarpa HOM05M000041 ORTHO05M000012 1.2e-08 63.2 167 30.5
GWHGAORA060826 Cenchrus purpureus HOM05M000041 ORTHO05M000012 1.6e-08 62.8 166 32.5
DDU272G0284 Dioscorea dumetorum HOM05M000041 ORTHO05M000012 1.6e-08 62.8 161 31.7
Horvu_MOREX_4H01G454700 Hordeum vulgare HOM05M000041 ORTHO05M000012 1.6e-08 62.8 166 33.1
Horvu_MOREX_6H01G481200 Hordeum vulgare HOM05M000041 ORTHO05M000012 1.6e-08 62.8 164 33.5
OB02G40350 Oryza brachyantha HOM05M000041 ORTHO05M000012 1.6e-08 62.8 165 33.3
TraesCS6A03G0818700 Triticum aestivum HOM05M000041 ORTHO05M000012 1.6e-08 62.8 164 32.3
TraesCS6B03G0969600 Triticum aestivum HOM05M000041 ORTHO05M000012 1.6e-08 62.8 164 32.3
TRIDC6BG054970 Triticum dicoccoides HOM05M000041 ORTHO05M000012 1.6e-08 62.8 164 32.3
AET6Gv20774100 Aegilops tauschii HOM05M000041 ORTHO05M000012 2.1e-08 62.4 162 32.1
ATR0104G005 Amborella trichopoda HOM05M000041 ORTHO05M000012 2.1e-08 62.4 162 34.6
evm.TU.AsparagusV1_03.390.V1.1 Asparagus officinalis HOM05M000041 ORTHO05M000012 2.1e-08 62.4 164 33.5
EJB05_45678 Eragrostis curvula HOM05M000041 ORTHO05M000012 2.1e-08 62.4 160 33.8
MisinT225300 Miscanthus sinensis HOM05M000041 ORTHO05M000012 2.1e-08 62.4 164 32.9
Ma09_g14590 Musa acuminata HOM05M000041 ORTHO05M000012 2.1e-08 62.4 166 30.7
Sspon.04G0002820-1A Saccharum spontaneum HOM05M000041 ORTHO05M000012 2.1e-08 62.4 162 31.5
Sspon.04G0002820-3C Saccharum spontaneum HOM05M000041 ORTHO05M000012 2.1e-08 62.4 162 31.5
Bradi1g72150 Brachypodium distachyon HOM05M000041 ORTHO05M000012 2.8e-08 62.0 165 33.3
GWHGAORA016804 Cenchrus purpureus HOM05M000041 ORTHO05M000012 2.8e-08 62.0 164 34.8
GWHGAORA025377 Cenchrus purpureus HOM05M000041 ORTHO05M000012 2.8e-08 62.0 166 32.5
Misin07G502000 Miscanthus sinensis HOM05M000041 ORTHO05M000012 2.8e-08 62.0 164 31.1
OsKitaake03g067300 Oryza sativa Kitaake HOM05M000041 ORTHO05M000012 2.8e-08 62.0 165 31.5
Os03g0186600 Oryza sativa ssp. japonica HOM05M000041 ORTHO05M000012 2.8e-08 62.0 165 31.5
Zm00001eb255670 Zea mays B73 HOM05M000041 ORTHO05M000012 2.8e-08 62.0 164 30.5
OsKitaake06g080600 Oryza sativa Kitaake HOM05M000041 ORTHO05M000012 3.6e-08 61.6 165 30.3
OsR498G0611859800.01 Oryza sativa ssp. indica HOM05M000041 ORTHO05M000012 3.6e-08 61.6 165 30.3
Os06g0217300 Oryza sativa ssp. japonica HOM05M000041 ORTHO05M000012 3.6e-08 61.6 165 30.3
GWHGASIY033192 Secale cereale HOM05M000041 ORTHO05M000012 3.6e-08 61.6 164 31.7
TraesCS6D03G0692300 Triticum aestivum HOM05M000041 ORTHO05M000012 3.6e-08 61.6 164 32.3
TRITD6Bv1G183600 Triticum turgidum HOM05M000041 ORTHO05M000012 3.6e-08 61.6 164 32.3
Dexi1B01G0027020 Digitaria exilis HOM05M000041 ORTHO05M000012 4.7e-08 61.2 162 30.2
Glyma.13G257000 Glycine max HOM05M000041 ORTHO05M000012 4.7e-08 61.2 161 34.2
Ma03_g06740 Musa acuminata HOM05M000041 ORTHO05M000012 4.7e-08 61.2 169 32.5
GWHGAZTO037523 Oryza alta HOM05M000041 ORTHO05M000012 4.7e-08 61.2 97 38.1
Zm00001eb193790 Zea mays B73 HOM05M000041 ORTHO05M000012 4.7e-08 61.2 140 32.9
Misin18G094400 Miscanthus sinensis HOM05M000041 ORTHO05M000012 6.2e-08 60.8 165 30.3
OB06G16920 Oryza brachyantha HOM05M000041 ORTHO05M000012 6.2e-08 60.8 166 28.9
PH02Gene05469 Phyllostachys edulis HOM05M000041 ORTHO05M000012 6.2e-08 60.8 163 30.1
TRIDC4BG051550 Triticum dicoccoides HOM05M000041 ORTHO05M000012 6.2e-08 60.8 165 32.7
Zm00001eb006480 Zea mays B73 HOM05M000041 ORTHO05M000012 6.2e-08 60.8 165 32.1
Sobic.004G306500 Sorghum bicolor HOM05M000041 ORTHO05M000012 8.1e-08 60.5 100 37.0
TRITD6Av1G192540 Triticum turgidum HOM05M000041 ORTHO05M000012 8.1e-08 60.5 164 32.9
Sspon.04G0002820-2B Saccharum spontaneum HOM05M000041 ORTHO05M000012 1.1e-07 60.1 102 36.3
Seita.9G513900 Setaria italica HOM05M000041 ORTHO05M000012 1.1e-07 60.1 161 32.3
Sevir.9G518400 Setaria viridis HOM05M000041 ORTHO05M000012 1.1e-07 60.1 161 32.3
Sobic.010G085400 Sorghum bicolor HOM05M000041 ORTHO05M000012 1.1e-07 60.1 167 28.7
TraesCS4A03G0004000 Triticum aestivum HOM05M000041 ORTHO05M000012 1.1e-07 60.1 165 32.7
TRIDC4AG000390 Triticum dicoccoides HOM05M000041 ORTHO05M000012 1.1e-07 60.1 165 32.7
V3.Lp_chr4_0G24928 Lolium perenne HOM05M000041 ORTHO05M000012 1.4e-07 59.7 163 33.7
V3.Lp_chr6_0G16636 Lolium perenne HOM05M000041 ORTHO05M000012 1.4e-07 59.7 165 31.5
Pahal.1G406700 Panicum hallii HOM05M000041 ORTHO05M000012 1.4e-07 59.7 164 34.1
TraesCS4B03G0792700 Triticum aestivum HOM05M000041 ORTHO05M000012 1.4e-07 59.7 165 32.7
TraesCS4D03G0709900 Triticum aestivum HOM05M000041 ORTHO05M000012 1.4e-07 59.7 165 32.7
TRITD4Av1G000900 Triticum turgidum HOM05M000041 ORTHO05M000012 1.4e-07 59.7 163 32.5
Dexi1A01G0028400 Digitaria exilis HOM05M000041 ORTHO05M000012 1.8e-07 59.3 158 31.6
PH02Gene02550 Phyllostachys edulis HOM05M000041 ORTHO05M000012 1.8e-07 59.3 166 39.2
PH02Gene10764 Phyllostachys edulis HOM05M000041 ORTHO05M000012 1.8e-07 59.3 166 31.9
PH02Gene49644 Phyllostachys edulis HOM05M000041 ORTHO05M000012 1.8e-07 59.3 164 29.9
AET7Gv20455800 Aegilops tauschii HOM05M000041 ORTHO05M000012 2.3e-07 58.9 165 30.3
TraesCS7D03G0398300 Triticum aestivum HOM05M000041 ORTHO05M000012 2.3e-07 58.9 165 30.3
TRITD7Av1G055870 Triticum turgidum HOM05M000041 ORTHO05M000012 2.3e-07 58.9 166 31.9
Bradi1g45812 Brachypodium distachyon HOM05M000041 ORTHO05M000012 3.1e-07 58.5 166 28.9
OsR498G0305350600.01 Oryza sativa ssp. indica HOM05M000041 ORTHO05M000012 3.1e-07 58.5 167 31.1
PH02Gene08550 Phyllostachys edulis HOM05M000041 ORTHO05M000012 3.1e-07 58.5 166 28.3
Zm00007a00007595 Zea mays B104 HOM05M000041 ORTHO05M000012 3.1e-07 58.5 97 36.1
Dexi9A01G0044890 Digitaria exilis HOM05M000041 ORTHO05M000012 4.0e-07 58.2 174 30.5
Glyma.06G095700 Glycine max HOM05M000041 ORTHO05M000012 4.0e-07 58.2 175 30.9
Glyma.15G057900 Glycine max HOM05M000041 ORTHO05M000012 4.0e-07 58.2 158 34.2
Ot_Chr4_g00314 Oropetium thomaeum HOM05M000041 ORTHO05M000012 4.0e-07 58.2 169 30.2
Pahal.9G577500 Panicum hallii HOM05M000041 ORTHO05M000012 4.0e-07 58.2 167 32.3
Sspon.08G0011530-2B Saccharum spontaneum HOM05M000041 ORTHO05M000012 4.0e-07 58.2 158 30.4
TraesCS7A03G0411400 Triticum aestivum HOM05M000041 ORTHO05M000012 4.0e-07 58.2 165 30.3
Ma10_g19310 Musa acuminata HOM05M000041 ORTHO05M000012 5.2e-07 57.8 154 27.9
TRIDC7AG021780 Triticum dicoccoides HOM05M000041 ORTHO05M000012 5.2e-07 57.8 164 30.5
GWHGASIY037525 Secale cereale HOM05M000041 ORTHO05M000012 6.8e-07 57.4 165 32.1
TRITD4Bv1G174840 Triticum turgidum HOM05M000041 ORTHO05M000012 6.8e-07 57.4 163 31.9
Dexi9B01G0044220 Digitaria exilis HOM05M000041 ORTHO05M000012 2.0e-06 55.8 99 37.4
GWHGASIY021031 Secale cereale HOM05M000041 ORTHO05M000012 2.0e-06 55.8 165 29.7
GWHGAORA054826 Cenchrus purpureus HOM05M000041 ORTHO05M000012 2.6e-06 55.5 168 28.6
p5.00_sc00068_p0106 Elaeis guineensis HOM05M000041 ORTHO05M000012 2.6e-06 55.5 117 41.0
V3.Lp_chr7_0.1G2030 Lolium perenne HOM05M000041 ORTHO05M000012 2.6e-06 55.5 160 30.0
Misin01G450300 Miscanthus sinensis HOM05M000041 ORTHO05M000012 3.4e-06 55.1 115 36.5
Horvu_MOREX_7H01G200700 Hordeum vulgare HOM05M000041 ORTHO05M000012 4.4e-06 54.7 164 30.5
Misin01G458500 Miscanthus sinensis HOM05M000041 ORTHO05M000012 4.4e-06 54.7 116 33.6
Zm00007a00011396 Zea mays B104 HOM05M000041 ORTHO05M000012 4.4e-06 54.7 159 30.8
Zjn_sc00007.1.g03950.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM05M000041 ORTHO05M000012 4.4e-06 54.7 96 34.4
TRIDC7BG012000 Triticum dicoccoides HOM05M000041 ORTHO05M000012 5.8e-06 54.3 168 29.8
Ot_Chr2_g17129 Oropetium thomaeum HOM05M000041 ORTHO05M000012 7.5e-06 53.9 163 30.1
Zjn_sc00049.1.g03950.1.am.mkhc Zoysia japonica ssp. nagirizaki HOM05M000041 ORTHO05M000012 7.5e-06 53.9 99 34.3
GWHGAZTO000845 Oryza alta HOM05M000041 ORTHO05M000012 9.8e-06 53.5 167 30.5


User provided reference genes

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