Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g086890.3 Solanum lycopersicum HOM05M004786 ORTHO05M005702 3.0e-238 827.4 436 100.0
Potri.001G269900 Populus trichocarpa HOM05M004786 ORTHO05M005702 4.6e-154 547.7 441 66.4
Potri.009G064600 Populus trichocarpa HOM05M004786 ORTHO05M005702 7.9e-146 520.4 441 63.7
Ma04_g06380 Musa acuminata HOM05M004786 ORTHO05M005702 4.3e-144 514.6 438 63.2
Ma09_g22820 Musa acuminata HOM05M004786 ORTHO05M005702 1.4e-142 509.6 438 63.5
Glyma.08G152600 Glycine max HOM05M004786 ORTHO05M005702 9.4e-139 496.9 448 61.8
MBI04_g14260_MAGBIO Magnolia biondii HOM05M004786 ORTHO05M005702 3.3e-136 488.4 439 62.4
Glyma.15G272000 Glycine max HOM05M004786 ORTHO05M005702 2.5e-131 472.2 444 59.7
MBI01_g36433_MAGBIO Magnolia biondii HOM05M004786 ORTHO05M005702 4.2e-131 471.5 446 59.9
AT3G52120 Arabidopsis thaliana HOM05M004786 ORTHO05M005702 1.2e-130 469.9 453 58.3
p5.00_sc00020_p0175 Elaeis guineensis HOM05M004786 ORTHO05M005702 2.2e-127 459.1 438 59.4
PH02Gene32089 Phyllostachys edulis HOM05M004786 ORTHO05M005702 3.1e-126 455.3 442 59.3
Zosma01g03980 Zostera marina HOM05M004786 ORTHO05M005702 9.1e-126 453.8 444 58.3
p5.00_sc00096_p0047 Elaeis guineensis HOM05M004786 ORTHO05M005702 2.6e-125 452.2 438 59.6
CALSI_Maker00018367 Calamus simplicifolius HOM05M004786 ORTHO05M005702 7.7e-125 450.7 358 65.9
CALSI_Maker00001325 Calamus simplicifolius HOM05M004786 ORTHO05M005702 2.9e-124 448.7 461 56.8
CDE10G0170 Ceratophyllum demersum HOM05M004786 ORTHO05M005702 9.4e-123 443.7 449 56.1
Pahal.2G422400 Panicum hallii HOM05M004786 ORTHO05M005702 3.1e-118 428.7 437 57.2
Sevir.2G375700 Setaria viridis HOM05M004786 ORTHO05M005702 4.5e-117 424.9 438 56.4
Seita.2G364500 Setaria italica HOM05M004786 ORTHO05M005702 5.9e-117 424.5 438 56.4
Zjn_sc00035.1.g00630.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM05M004786 ORTHO05M005702 1.7e-116 422.9 433 56.1
DDU775G0098 Dioscorea dumetorum HOM05M009930 ORTHO05M012516 2.9e-116 422.2 444 56.8
Spipo28G0004100 Spirodela polyrhiza HOM05M004786 ORTHO05M005702 1.6e-114 416.4 445 56.9
Aco015658 Ananas comosus HOM05M004786 ORTHO05M005702 2.1e-114 416.0 441 55.1
CDE10G1291 Ceratophyllum demersum HOM05M004786 ORTHO05M005702 3.6e-114 415.2 449 53.5
Dexi2B01G0029920 Digitaria exilis HOM05M004786 ORTHO05M005702 2.6e-112 409.1 455 54.5
Asa4G05763 Allium sativum HOM05M004786 ORTHO05M005702 4.4e-112 408.3 428 56.1
Zosma06g16240 Zostera marina HOM05M004786 ORTHO05M005702 1.3e-111 406.8 441 55.3
Pahal.2G203500 Panicum hallii HOM05M004786 ORTHO05M005702 1.7e-111 406.4 435 54.0
Ot_Chr2_g25276 Oropetium thomaeum HOM05M004786 ORTHO05M005702 2.8e-111 405.6 436 55.0
HPP92_022791 Vanilla planifolia HOM05M004786 ORTHO05M005702 6.3e-111 404.4 441 56.5
ATR0733G146 Amborella trichopoda HOM05M004786 ORTHO05M005702 5.9e-109 397.9 434 54.1
Sobic.002G350300 Sorghum bicolor HOM05M004786 ORTHO05M005702 2.2e-108 396.0 437 54.0
TraesCS5B03G0461100 Triticum aestivum HOM05M004786 ORTHO05M005702 3.8e-108 395.2 439 54.9
OsR498G0916915500.01 Oryza sativa ssp. indica HOM05M004786 ORTHO05M005702 1.1e-107 393.7 440 53.2
Bradi4g27117 Brachypodium distachyon HOM05M004786 ORTHO05M005702 1.5e-107 393.3 441 55.1
Misin03G316600 Miscanthus sinensis HOM05M004786 ORTHO05M005702 4.2e-107 391.7 437 53.3
Sevir.2G167300 Setaria viridis HOM05M004786 ORTHO05M005702 1.6e-106 389.8 435 53.6
OB09G12320 Oryza brachyantha HOM05M004786 ORTHO05M005702 2.1e-106 389.4 440 55.5
Seita.2G163000 Setaria italica HOM05M004786 ORTHO05M005702 2.1e-106 389.4 437 53.1
GWHGASIY025767 Secale cereale HOM05M004786 ORTHO05M005702 2.3e-105 386.0 439 54.0
GWHGAORA008610 Cenchrus purpureus HOM05M004786 ORTHO05M005702 1.2e-104 383.6 433 53.1
TraesCS5D03G0430500 Triticum aestivum HOM05M004786 ORTHO05M005702 1.2e-104 383.6 438 53.9
Sspon.02G0004600-2B Saccharum spontaneum HOM05M004786 ORTHO05M005702 4.4e-104 381.7 436 52.3
TraesCS5A03G0465700 Triticum aestivum HOM05M004786 ORTHO05M005702 1.3e-103 380.2 439 54.2
TRITD5Av1G127730 Triticum turgidum HOM05M004786 ORTHO05M005702 1.3e-103 380.2 439 54.2
Mapoly0063s0041 Marchantia polymorpha HOM05M004786 ORTHO05M005702 2.2e-103 379.4 484 47.7
SEGI_00751 Sequoiadendron giganteum HOM05M004786 ORTHO05M005702 2.2e-103 379.4 438 51.1
Horvu_MOREX_5H01G296400 Hordeum vulgare HOM05M004786 ORTHO05M005702 1.4e-102 376.7 441 53.1
V3.Lp_chr5_0G10686 Lolium perenne HOM05M004786 ORTHO05M005702 3.1e-102 375.6 438 53.0
Misin04G331800 Miscanthus sinensis HOM05M004786 ORTHO05M005702 4.1e-102 375.2 437 51.9
PH02Gene38309 Phyllostachys edulis HOM05M004786 ORTHO05M005702 3.5e-101 372.1 409 53.5
GWHGAZTO097039 Oryza alta HOM05M004786 ORTHO05M005702 1.7e-100 369.8 432 52.3
TRITD5Bv1G107320 Triticum turgidum HOM05M004786 ORTHO05M005702 3.8e-100 368.6 390 56.2
Sspon.02G0004600-1A Saccharum spontaneum HOM05M004786 ORTHO05M005702 4.2e-99 365.2 428 51.4
CDE04G1996 Ceratophyllum demersum HOM05M004786 ORTHO05M005702 1.6e-98 363.2 386 53.1
Sspon.02G0004600-1P Saccharum spontaneum HOM05M004786 ORTHO05M005702 2.8e-98 362.5 427 51.1
Zm00001eb325220 Zea mays B73 HOM05M004786 ORTHO05M005702 6.1e-98 361.3 436 50.0
CALSI_Maker00018645 Calamus simplicifolius HOM05M004786 ORTHO05M005702 1.5e-96 356.7 257 68.9
evm.TU.AsparagusV1_01.3329.V1.1 Asparagus officinalis HOM05M004786 ORTHO05M005702 1.8e-94 349.7 449 49.4
OsKitaake09g034300 Oryza sativa Kitaake HOM05M004786 ORTHO05M005702 4.1e-94 348.6 293 63.8
Sspon.02G0004600-3C Saccharum spontaneum HOM05M004786 ORTHO05M005702 5.4e-94 348.2 435 48.3
EJB05_44713 Eragrostis curvula HOM05M004786 ORTHO05M005702 5.0e-92 341.7 433 49.2
TRIDC5AG028560 Triticum dicoccoides HOM05M004786 ORTHO05M005702 5.6e-91 338.2 292 62.7
TRIDC5BG029980 Triticum dicoccoides HOM05M004786 ORTHO05M005702 1.2e-90 337.0 292 62.0
SMO358G0717 Selaginella moellendorffii HOM05M004786 ORTHO05M005702 1.8e-89 333.2 433 49.4
AET5Gv20436100 Aegilops tauschii HOM05M004786 ORTHO05M005702 1.2e-88 330.5 306 59.8
Pp3c7_22470 Physcomitrium patens HOM05M004786 ORTHO05M005702 2.2e-87 326.2 482 45.6
CBR_g19876 Chara braunii HOM05M004786 ORTHO05M005702 1.1e-86 323.9 517 44.5
Sspon.02G0004600-4D Saccharum spontaneum HOM05M004786 ORTHO05M005702 9.5e-75 284.3 382 46.9
GWHGAZTO050555 Oryza alta HOM05M004786 ORTHO05M005702 2.2e-55 219.9 200 59.5
Dexi2A01G0031050 Digitaria exilis HOM05M004786 ORTHO05M005702 1.5e-51 207.2 428 37.4
AagrBONN_evm.TU.Sc2ySwM_228.206 Anthoceros agrestis HOM05M004786 ORTHO05M005702 6.2e-50 201.8 338 42.3
Pp3c11_4770 Physcomitrium patens HOM05M004786 ORTHO05M005702 2.9e-39 166.4 321 41.1
Cre16.g686000 Chlamydomonas reinhardtii HOM05M004786 ORTHO05M005702 9.3e-30 134.8 484 28.1
Pp3c11_4670 Physcomitrium patens HOM05M004786 ORTHO05M005702 6.7e-28 128.6 264 40.5
Dexi2A01G0013880 Digitaria exilis HOM05M004786 ORTHO05M005702 4.1e-25 119.4 72 76.4
Zm00007a00048573 Zea mays B104 HOM05M004786 ORTHO05M005702 2.6e-24 116.7 70 75.7
MCO15G372 Micromonas commoda HOM05M004786 ORTHO05M005702 1.1e-17 94.7 450 24.9
Zm00007a00046144 Zea mays B104 HOM05M004786 ORTHO05M005702 1.1e-11 74.7 56 66.1
AagrBONN_evm.TU.Sc2ySwM_228.74 Anthoceros agrestis HOM05M004786 ORTHO05M005702 1.5e-11 74.3 62 59.7
TraesCS2D03G0007700 Triticum aestivum HOM05M004867 ORTHO05M005894 5.9e-08 62.4 122 32.8
GWHGASIY041958 Secale cereale HOM05M004867 ORTHO05M005894 5.0e-07 59.3 122 32.0
Horvu_MOREX_2H01G004200 Hordeum vulgare HOM05M004867 ORTHO05M005894 8.5e-07 58.5 116 31.9
Os09g0281600 Oryza sativa ssp. japonica HOM05M004786 ORTHO05M005702 1.9e-06 57.4 128 36.7
TRIDC2AG000180 Triticum dicoccoides HOM05M004867 ORTHO05M005894 3.2e-06 56.6 67 41.8
Mapoly0043s0012 Marchantia polymorpha HOM05M006589 ORTHO05M008474 5.5e-06 55.8 66 40.9
Sspon.05G0027660-1B Saccharum spontaneum HOM05M004867 ORTHO05M005894 5.5e-06 55.8 110 31.8
Sspon.05G0027670-2D Saccharum spontaneum HOM05M004867 ORTHO05M005894 5.5e-06 55.8 110 31.8
TraesCSU03G0013600 Triticum aestivum HOM05M004867 ORTHO05M005894 5.5e-06 55.8 67 40.3
TRITD2Bv1G001470 Triticum turgidum HOM05M004867 ORTHO05M005894 5.5e-06 55.8 67 40.3
TraesCS2A03G0010000 Triticum aestivum HOM05M004867 ORTHO05M005894 7.2e-06 55.5 67 40.3
TRITD2Av1G001390 Triticum turgidum HOM05M004867 ORTHO05M005894 7.2e-06 55.5 67 40.3
Cre02.g105287 Chlamydomonas reinhardtii HOM05M004786 ORTHO05M008713 9.4e-06 55.1 56 46.4
Sspon.05G0027660-2C Saccharum spontaneum HOM05M004867 ORTHO05M005894 9.4e-06 55.1 120 30.0


User provided reference genes

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