Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
OsKitaake11g243800 Oryza sativa Kitaake HOM05M007040 ORTHO05M009016 1.1e-71 272.3 128 100.0
Os11g0706100 Oryza sativa ssp. japonica HOM05M007040 ORTHO05M009016 1.1e-71 272.3 128 100.0
GWHGAZTO065224 Oryza alta HOM05M007040 ORTHO05M009016 5.3e-66 253.4 131 90.8
OsR498G0203365400.01 Oryza sativa ssp. indica HOM05M007040 ORTHO05M009016 3.4e-65 250.8 131 90.8
OsKitaake02g114200 Oryza sativa Kitaake HOM05M007040 ORTHO05M009016 1.6e-62 241.9 131 90.1
PH02Gene18725 Phyllostachys edulis HOM05M007040 ORTHO05M009016 1.2e-57 225.7 133 81.2
PH02Gene23786 Phyllostachys edulis HOM05M007040 ORTHO05M009016 1.3e-56 222.2 124 82.3
PH02Gene18729 Phyllostachys edulis HOM05M007040 ORTHO05M009016 1.7e-56 221.9 123 83.7
PH02Gene23782 Phyllostachys edulis HOM05M007040 ORTHO05M009016 2.9e-56 221.1 124 82.3
MisinT074400 Miscanthus sinensis HOM05M007040 ORTHO05M009016 4.2e-55 217.2 129 78.3
Pahal.8G267000 Panicum hallii HOM05M007040 ORTHO05M009016 2.1e-54 214.9 123 80.5
GWHGAORA043208 Cenchrus purpureus HOM05M007040 ORTHO05M009016 3.6e-54 214.2 131 77.1
Seita.8G250300 Setaria italica HOM05M007040 ORTHO05M009016 4.6e-54 213.8 131 77.9
Sevir.8G261000 Setaria viridis HOM05M007040 ORTHO05M009016 4.6e-54 213.8 131 77.9
Sobic.005G231100 Sorghum bicolor HOM05M007040 ORTHO05M009016 6.1e-54 213.4 129 76.0
TRIDC4BG021990 Triticum dicoccoides HOM05M007040 ORTHO05M009016 3.0e-53 211.1 132 76.5
GWHGAORA000419 Cenchrus purpureus HOM05M007040 ORTHO05M009016 5.1e-53 210.3 129 76.7
GWHGASIY019517 Secale cereale HOM05M007040 ORTHO05M009016 6.7e-53 209.9 118 82.2
AET4Gv20288200 Aegilops tauschii HOM05M007040 ORTHO05M009016 2.5e-52 208.0 132 76.5
V3.Lp_chr4_0G13460 Lolium perenne HOM05M007040 ORTHO05M009016 9.7e-52 206.1 123 78.0
TRIDC4AG028490 Triticum dicoccoides HOM05M007040 ORTHO05M009016 2.8e-51 204.5 132 75.0
Zm00001eb164460 Zea mays B73 HOM05M007040 ORTHO05M009016 4.8e-51 203.8 122 72.1
EJB05_31683 Eragrostis curvula HOM05M007040 ORTHO05M009016 9.1e-50 199.5 134 72.4
Os02g0260400 Oryza sativa ssp. japonica HOM05M007040 ORTHO05M009016 1.7e-48 195.3 131 74.8
Zm00007a00049593 Zea mays B104 HOM05M007040 ORTHO05M009016 2.2e-48 194.9 119 72.3
Bradi4g09240 Brachypodium distachyon HOM05M007040 ORTHO05M009016 7.2e-47 189.9 118 78.0
TraesCS4B03G0328900 Triticum aestivum HOM05M007040 ORTHO05M009016 1.2e-41 172.6 107 76.6
TRITD4Bv1G061150 Triticum turgidum HOM05M007040 ORTHO05M009016 1.2e-41 172.6 107 76.6
Horvu_MOREX_4H01G180300 Hordeum vulgare HOM05M007040 ORTHO05M009016 1.1e-39 166.0 107 73.8
TraesCS4D03G0268400 Triticum aestivum HOM05M007040 ORTHO05M009016 1.1e-39 166.0 108 76.9
Aco015449 Ananas comosus HOM05M007040 ORTHO05M009016 1.6e-38 162.2 88 79.5
Spipo29G0025100 Spirodela polyrhiza HOM05M007040 ORTHO05M009016 8.0e-38 159.8 81 86.4
Ma07_g10360 Musa acuminata HOM05M007040 ORTHO05M009016 2.3e-37 158.3 83 84.3
Glyma.03G066000 Glycine max HOM05M007040 ORTHO05M009016 6.7e-37 156.8 106 66.0
PH02Gene18720 Phyllostachys edulis HOM05M007040 ORTHO05M009016 2.6e-36 154.8 73 91.8
Bradi1g00222 Brachypodium distachyon HOM05M007040 ORTHO05M009016 3.3e-36 154.5 73 91.8
HPP92_019244 Vanilla planifolia HOM05M007040 ORTHO05M009016 3.3e-36 154.5 80 81.2
Zosma01g25370 Zostera marina HOM05M007040 ORTHO05M009016 8.2e-35 149.8 81 80.2
Potri.016G099700 Populus trichocarpa HOM05M007040 ORTHO05M009016 1.1e-34 149.4 77 81.8
SEGI_13406 Sequoiadendron giganteum HOM05M007040 ORTHO05M009016 1.8e-34 148.7 88 72.7
AT3G09310 Arabidopsis thaliana HOM05M007040 ORTHO05M009016 7.0e-34 146.7 79 77.2
MisinT131200 Miscanthus sinensis HOM05M007040 ORTHO05M009016 2.0e-33 145.2 127 56.7
Mapoly0019s0017 Marchantia polymorpha HOM05M007040 ORTHO05M009016 4.5e-33 144.1 86 67.4
GWHGAORA043188 Cenchrus purpureus HOM05M007040 ORTHO05M009016 1.5e-31 139.0 66 89.4
Solyc10g084810.3 Solanum lycopersicum HOM05M007040 ORTHO05M009016 1.9e-31 138.7 73 78.1
Pp3c15_21390 Physcomitrium patens HOM05M007040 ORTHO05M009016 4.2e-31 137.5 86 67.4
CBR_g19672 Chara braunii HOM05M007040 ORTHO05M009016 1.2e-30 136.0 83 65.1
DDU256G0374 Dioscorea dumetorum HOM05M007040 ORTHO05M009016 1.6e-30 135.6 74 83.8
MBI05_g28376_MAGBIO Magnolia biondii HOM05M007040 ORTHO05M009016 1.6e-30 135.6 102 68.6
AagrBONN_evm.TU.Sc2ySwM_228.2371 Anthoceros agrestis HOM05M007040 ORTHO05M009016 6.1e-30 133.7 96 58.3
p5.00_sc00560_p0003 Elaeis guineensis HOM05M007040 ORTHO05M009016 2.3e-29 131.7 76 78.9
Asa3G04567 Allium sativum HOM05M007040 ORTHO05M009016 5.2e-29 130.6 68 86.8
ATR0559G251 Amborella trichopoda HOM05M007040 ORTHO05M009016 1.4e-26 122.5 69 75.4
Bradi5g12341 Brachypodium distachyon HOM05M007040 ORTHO05M009016 2.7e-25 118.2 66 75.8
Bradi4g09242 Brachypodium distachyon HOM05M007040 ORTHO05M009016 2.2e-24 115.2 76 72.4
Cre17.g720183 Chlamydomonas reinhardtii HOM05M007040 ORTHO05M009016 2.2e-24 115.2 71 64.8
SMO165G0096 Selaginella moellendorffii HOM05M007040 ORTHO05M009016 6.1e-22 107.1 66 72.7
CALSI_Maker00048564 Calamus simplicifolius HOM05M007040 ORTHO05M009016 3.0e-21 104.8 57 86.0
MCO07G608 Micromonas commoda HOM05M007040 ORTHO05M009016 1.4e-18 95.9 64 56.2
PRCOL_00002574 Prasinoderma coloniale HOM05M007040 ORTHO05M009016 2.7e-17 91.7 75 56.0
OB11G28130 Oryza brachyantha HOM05M006890 ORTHO05M007353 6.1e-14 80.5 43 90.7
Zjn_sc00096.1.g00200.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM05M007040 ORTHO05M009016 2.3e-13 78.6 55 69.1
Bradi4g09254 Brachypodium distachyon HOM05M007040 ORTHO05M009016 7.5e-12 73.6 79 51.9
GWHGAZTO013226 Oryza alta HOM05M036381 ORTHO05M007353 1.1e-10 69.7 44 77.3
CBR_g19673 Chara braunii HOM05M007040 ORTHO05M009016 7.3e-07 57.0 37 62.2


User provided reference genes

Program Settings