Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
OsKitaake11g210200 Oryza sativa Kitaake HOM05M005673 ORTHO05M006838 5.7e-98 360.1 181 100.0
OsR498G1120608000.01 Oryza sativa ssp. indica HOM05M005673 ORTHO05M006838 5.7e-98 360.1 181 100.0
Os11g0638900 Oryza sativa ssp. japonica HOM05M005673 ORTHO05M006838 5.7e-98 360.1 181 100.0
GWHGAZTO012855 Oryza alta HOM05M005673 ORTHO05M006838 2.4e-96 354.8 181 98.3
OB11G25650 Oryza brachyantha HOM05M005673 ORTHO05M006838 1.5e-90 335.5 180 92.2
Pahal.8G242800 Panicum hallii HOM05M005673 ORTHO05M006838 1.0e-86 322.8 181 87.8
PH02Gene35195 Phyllostachys edulis HOM05M005673 ORTHO05M006838 1.7e-86 322.0 181 87.8
Sspon.06G0026450-1B Saccharum spontaneum HOM05M005673 ORTHO05M006838 5.0e-86 320.5 181 86.7
Misin09G196000 Miscanthus sinensis HOM05M005673 ORTHO05M006838 6.5e-86 320.1 181 86.2
EJB05_26476 Eragrostis curvula HOM05M005673 ORTHO05M006838 3.2e-85 317.8 181 87.3
Sobic.005G198000 Sorghum bicolor HOM05M005673 ORTHO05M006838 5.5e-85 317.0 181 86.2
Sspon.06G0026450-2C Saccharum spontaneum HOM05M005673 ORTHO05M006838 7.2e-85 316.6 181 86.2
EJB05_26478 Eragrostis curvula HOM05M005673 ORTHO05M006838 1.2e-84 315.8 181 86.7
Seita.8G209400 Setaria italica HOM05M005673 ORTHO05M006838 7.9e-84 313.2 181 84.5
Sevir.8G219000 Setaria viridis HOM05M005673 ORTHO05M006838 7.9e-84 313.2 181 84.5
Zm00001eb166150 Zea mays B73 HOM05M005673 ORTHO05M006838 1.4e-83 312.4 181 85.6
Zm00007a00039917 Zea mays B104 HOM05M005673 ORTHO05M006838 3.0e-83 311.2 181 85.1
GWHGAORA043293 Cenchrus purpureus HOM05M005673 ORTHO05M006838 3.9e-83 310.8 181 83.4
Misin10G165800 Miscanthus sinensis HOM05M005673 ORTHO05M006838 1.5e-82 308.9 181 84.5
GWHGAORA000234 Cenchrus purpureus HOM05M005673 ORTHO05M006838 4.4e-82 307.4 181 83.4
Bradi4g12060 Brachypodium distachyon HOM05M005673 ORTHO05M006838 1.7e-81 305.4 181 81.8
PH02Gene47878 Phyllostachys edulis HOM05M005673 ORTHO05M006838 2.4e-80 301.6 170 87.6
AET4Gv20333100 Aegilops tauschii HOM05M005673 ORTHO05M006838 3.1e-80 301.2 181 82.9
TraesCS4D03G0332800 Triticum aestivum HOM05M005673 ORTHO05M006838 3.1e-80 301.2 181 82.9
Zm00001eb115370 Zea mays B73 HOM05M005673 ORTHO05M006838 4.1e-80 300.8 181 82.3
Zm00007a00045457 Zea mays B104 HOM05M005673 ORTHO05M006838 5.3e-80 300.4 180 82.2
Horvu_MOREX_4H01G200500 Hordeum vulgare HOM05M005673 ORTHO05M006838 2.6e-79 298.1 181 81.8
TRIDC4BG024520 Triticum dicoccoides HOM05M005673 ORTHO05M006838 2.6e-79 298.1 181 81.8
TRITD4Bv1G071920 Triticum turgidum HOM05M005673 ORTHO05M006838 2.6e-79 298.1 181 81.8
GWHGASIY019613 Secale cereale HOM05M005673 ORTHO05M006838 2.2e-78 295.0 181 80.7
V3.Lp_chr4_0G14360 Lolium perenne HOM05M005673 ORTHO05M006838 2.0e-74 282.0 171 78.9
Zjn_sc00192.1.g00280.1.cf-es.mkhc Zoysia japonica ssp. nagirizaki HOM05M005673 ORTHO05M006838 2.6e-74 281.6 197 73.1
Sspon.06G0026450-3D Saccharum spontaneum HOM05M005673 ORTHO05M006838 1.6e-71 272.3 180 77.2
TraesCS4A03G0351600 Triticum aestivum HOM05M005673 ORTHO05M006838 7.2e-69 263.5 161 80.7
TRITD4Av1G103230 Triticum turgidum HOM05M005673 ORTHO05M006838 7.2e-69 263.5 161 80.7
TraesCS4B03G0346100 Triticum aestivum HOM05M005673 ORTHO05M006838 1.0e-67 259.6 161 80.1
GWHGAZTO064894 Oryza alta HOM05M005673 ORTHO05M006838 1.7e-57 225.7 127 92.1
Aco020902 Ananas comosus HOM05M005673 ORTHO05M006838 1.1e-53 213.0 172 60.5
Ma09_g19040 Musa acuminata HOM05M005673 ORTHO05M006838 2.0e-50 202.2 173 59.5
CALSI_Maker00031932 Calamus simplicifolius HOM05M005673 ORTHO05M006838 7.8e-47 190.3 161 59.0
DDU801G0160 Dioscorea dumetorum HOM05M005673 ORTHO05M006838 9.5e-45 183.3 177 52.5
HPP92_020382 Vanilla planifolia HOM05M005673 ORTHO05M006838 1.6e-44 182.6 173 53.2
evm.TU.AsparagusV1_08.997.V1.1 Asparagus officinalis HOM05M005673 ORTHO05M006838 2.8e-44 181.8 170 52.9
p5.00_sc00120_p0053 Elaeis guineensis HOM05M005673 ORTHO05M006838 6.2e-44 180.6 172 54.7
Potri.009G053400 Populus trichocarpa HOM05M005673 ORTHO05M006838 2.0e-42 175.6 175 52.6
CDE05G0618 Ceratophyllum demersum HOM05M005673 ORTHO05M006838 3.4e-42 174.9 172 50.6
ATR0332G053 Amborella trichopoda HOM05M005673 ORTHO05M006838 1.4e-40 169.5 162 52.5
Spipo2G0070000 Spirodela polyrhiza HOM05M005673 ORTHO05M006838 4.1e-40 167.9 161 52.8
Asa5G03578 Allium sativum HOM05M005673 ORTHO05M006838 9.2e-40 166.8 170 49.4
Glyma.02G304000 Glycine max HOM05M005673 ORTHO05M006838 1.0e-38 163.3 176 46.0
Solyc11g065750.2 Solanum lycopersicum HOM05M005673 ORTHO05M006838 3.0e-38 161.8 175 49.1
CDE05G0406 Ceratophyllum demersum HOM05M005673 ORTHO05M006838 5.0e-38 161.0 171 47.4
Glyma.08G335400 Glycine max HOM05M005673 ORTHO05M006838 6.6e-38 160.6 175 47.4
AT1G51350 Arabidopsis thaliana HOM05M005673 ORTHO05M006838 3.3e-37 158.3 170 48.8
Glyma.18G070400 Glycine max HOM05M005673 ORTHO05M006838 2.8e-36 155.2 175 46.3
SEGI_01130 Sequoiadendron giganteum HOM05M005673 ORTHO05M006838 3.1e-35 151.8 172 46.5
SMO347G0278 Selaginella moellendorffii HOM05M005673 ORTHO05M006838 8.9e-35 150.2 173 45.7
Mapoly0179s0020 Marchantia polymorpha HOM05M005673 ORTHO05M006838 9.9e-34 146.7 172 43.0
PH02Gene27163 Phyllostachys edulis HOM05M005673 ORTHO05M006838 2.1e-31 139.0 94 75.5
AagrBONN_evm.TU.Sc2ySwM_340.1837 Anthoceros agrestis HOM05M005673 ORTHO05M006838 8.1e-28 127.1 172 40.7
Dexi8A01G0016330 Digitaria exilis HOM05M005673 ORTHO05M006838 2.9e-25 118.6 67 88.1
DexiUA01G0012530 Digitaria exilis HOM05M005673 ORTHO05M006838 2.9e-25 118.6 67 88.1
Pp3c15_7590 Physcomitrium patens HOM05M005673 ORTHO05M006838 4.1e-24 114.8 169 40.2
Pp3c9_10010 Physcomitrium patens HOM05M005673 ORTHO05M006838 2.1e-23 112.5 169 39.6
Zosma05g05260 Zostera marina HOM05M005673 ORTHO05M006838 2.3e-22 109.0 166 39.8
PH02Gene08541 Phyllostachys edulis HOM05M005673 ORTHO05M006838 2.2e-17 92.4 111 51.4
PH02Gene02967 Phyllostachys edulis HOM05M004190 ORTHO05M005690 4.6e-07 58.2 50 56.0


User provided reference genes

Program Settings