Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
OsKitaake11g198100 Oryza sativa Kitaake HOM05M005732 ORTHO05M005851 1.5e-249 865.1 494 100.0
Os11g0616300 Oryza sativa ssp. japonica HOM05M005732 ORTHO05M005851 1.5e-249 865.1 494 100.0
OsR498G1120512200.01 Oryza sativa ssp. indica HOM05M005732 ORTHO05M005851 2.0e-238 828.2 499 96.6
GWHGAZTO064772 Oryza alta HOM05M005732 ORTHO05M005851 5.7e-209 730.3 539 83.3
GWHGAZTO012741 Oryza alta HOM05M005732 ORTHO05M005851 1.7e-208 728.8 505 88.3
OB11G24990 Oryza brachyantha HOM05M005732 ORTHO05M005851 2.6e-206 721.5 498 85.1
V3.Lp_chr4_0G14778 Lolium perenne HOM05M005732 ORTHO05M005851 6.6e-165 583.9 509 70.7
Seita.8G195600 Setaria italica HOM05M005732 ORTHO05M005851 4.9e-160 567.8 520 72.1
Sevir.8G204300 Setaria viridis HOM05M005732 ORTHO05M005851 2.1e-158 562.4 524 71.2
PH02Gene44013 Phyllostachys edulis HOM05M005732 ORTHO05M005851 2.3e-157 558.9 492 69.7
Pahal.8G233500 Panicum hallii HOM05M005732 ORTHO05M005851 6.6e-157 557.4 519 70.7
GWHGAORA001363 Cenchrus purpureus HOM05M005732 ORTHO05M005851 1.4e-154 549.7 528 69.5
Dexi8A01G0015490 Digitaria exilis HOM05M005732 ORTHO05M005851 2.2e-152 542.3 530 69.6
Dexi8B01G0013770 Digitaria exilis HOM05M005732 ORTHO05M005851 7.8e-150 533.9 535 68.0
GWHGAORA043363 Cenchrus purpureus HOM05M005732 ORTHO05M005851 6.6e-149 530.8 528 68.9
PH02Gene24606 Phyllostachys edulis HOM05M005732 ORTHO05M005851 4.3e-148 528.1 496 69.6
EJB05_26614 Eragrostis curvula HOM05M005732 ORTHO05M005851 6.9e-146 520.8 518 67.2
Sspon.06G0017210-2C Saccharum spontaneum HOM05M005732 ORTHO05M005851 8.9e-146 520.4 504 67.7
Sspon.06G0017210-1A Saccharum spontaneum HOM05M005732 ORTHO05M005851 5.8e-145 517.7 509 67.0
EJB05_26578 Eragrostis curvula HOM05M005732 ORTHO05M005851 4.2e-143 511.5 520 66.0
Sspon.06G0017210-3D Saccharum spontaneum HOM05M005732 ORTHO05M005851 1.2e-142 510.0 509 64.6
Sobic.005G188400 Sorghum bicolor HOM05M005732 ORTHO05M005851 1.9e-140 502.7 523 65.0
Zjn_sc00080.1.g01050.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM05M005732 ORTHO05M005851 4.3e-140 501.5 534 64.0
TraesCS2B03G0934500 Triticum aestivum HOM05M005732 ORTHO05M005851 9.9e-137 490.3 432 69.4
TraesCS2D03G0788200 Triticum aestivum HOM05M005732 ORTHO05M005851 9.9e-137 490.3 432 69.4
GWHGASIY009394 Secale cereale HOM05M005732 ORTHO05M005851 1.3e-136 490.0 432 70.6
TRIDC2AG050010 Triticum dicoccoides HOM05M005732 ORTHO05M005851 1.3e-136 490.0 432 69.4
TRITD2Av1G208280 Triticum turgidum HOM05M005732 ORTHO05M005851 1.3e-136 490.0 432 69.4
TRIDC2BG052940 Triticum dicoccoides HOM05M005732 ORTHO05M005851 2.9e-136 488.8 432 69.2
TRITD2Bv1G172310 Triticum turgidum HOM05M005732 ORTHO05M005851 6.4e-136 487.6 431 69.4
AET2Gv20776800 Aegilops tauschii HOM05M005732 ORTHO05M005851 1.4e-135 486.5 432 69.0
Bradi4g13773 Brachypodium distachyon HOM05M005732 ORTHO05M005851 1.4e-135 486.5 525 66.1
Horvu_MOREX_2H01G507600 Hordeum vulgare HOM05M005732 ORTHO05M005851 7.1e-135 484.2 431 70.3
MisinT159400 Miscanthus sinensis HOM05M005732 ORTHO05M005851 4.0e-130 468.4 405 67.7
Misin09G174000 Miscanthus sinensis HOM05M005732 ORTHO05M005851 8.4e-128 460.7 406 69.7
GWHGAORA043366 Cenchrus purpureus HOM05M005732 ORTHO05M005851 2.7e-110 402.5 327 71.3
Zm00007a00028068 Zea mays B104 HOM05M005732 ORTHO05M005851 7.9e-110 401.0 421 61.8
p5.00_sc00036_p0034 Elaeis guineensis HOM05M005732 ORTHO05M005851 6.5e-104 381.3 504 50.0
DDU467G0011 Dioscorea dumetorum HOM05M005732 ORTHO05M005851 2.5e-95 352.8 451 48.1
DDU550G0231 Dioscorea dumetorum HOM05M005732 ORTHO05M005851 4.2e-95 352.1 451 48.1
p5.00_sc00035_p0128 Elaeis guineensis HOM05M005732 ORTHO05M005851 2.7e-94 349.4 506 46.6
CALSI_Maker00000601 Calamus simplicifolius HOM05M005732 ORTHO05M005851 7.9e-94 347.8 510 45.3
Spipo0G0055400 Spirodela polyrhiza HOM05M005732 ORTHO05M005851 2.0e-89 333.2 494 46.2
CALSI_Maker00000586 Calamus simplicifolius HOM05M005732 ORTHO05M005851 2.6e-89 332.8 516 45.7
Aco000148 Ananas comosus HOM05M005732 ORTHO05M005851 3.8e-88 328.9 506 44.7
Ma10_g25690 Musa acuminata HOM05M005732 ORTHO05M005851 8.5e-88 327.8 397 50.4
evm.TU.AsparagusV1_08.2704.V1.1 Asparagus officinalis HOM05M005732 ORTHO05M005851 9.4e-87 324.3 448 48.0
Ma02_g09220 Musa acuminata HOM05M005732 ORTHO05M005851 2.8e-83 312.8 513 42.9
DDU049G0277 Dioscorea dumetorum HOM05M001470 ORTHO05M001667 4.8e-83 312.0 445 46.3
DDU051G0012 Dioscorea dumetorum HOM05M001470 ORTHO05M001667 4.8e-83 312.0 445 46.3
Solyc03g123590.4 Solanum lycopersicum HOM05M005732 ORTHO05M005851 8.2e-83 311.2 497 43.3
Potri.001G163000 Populus trichocarpa HOM05M005732 ORTHO05M005851 8.5e-80 301.2 482 43.2
Glyma.16G013800 Glycine max HOM05M005732 ORTHO05M005851 3.2e-79 299.3 496 40.9
MBI19_g32870_MAGBIO Magnolia biondii HOM05M005732 ORTHO05M005851 1.4e-77 293.9 519 41.6
MBI13_g01693_MAGBIO Magnolia biondii HOM05M005732 ORTHO05M005851 4.0e-77 292.4 506 41.5
evm.TU.AsparagusV1_03.1394.V1.1 Asparagus officinalis HOM05M005732 ORTHO05M005851 6.3e-75 285.0 456 43.4
p5.00_sc00064_p0036 Elaeis guineensis HOM05M005732 ORTHO05M005851 2.7e-73 279.6 481 42.4
CDE06G0894 Ceratophyllum demersum HOM05M005732 ORTHO05M005851 3.1e-66 256.1 416 42.8
AT1G53860 Arabidopsis thaliana HOM05M005732 ORTHO05M005851 6.6e-64 248.4 457 41.1
CALSI_Maker00031410 Calamus simplicifolius HOM05M005732 ORTHO05M005851 9.5e-63 244.6 252 57.1
CDE03G0116 Ceratophyllum demersum HOM05M000828 ORTHO05M005851 1.0e-61 241.1 465 39.8
Glyma.07G045800 Glycine max HOM05M005732 ORTHO05M005851 3.7e-59 232.6 420 40.5
Zosma03g25350 Zostera marina HOM05M005732 ORTHO05M005851 8.3e-59 231.5 342 45.6
SEGI_36040 Sequoiadendron giganteum HOM05M005732 ORTHO05M005851 7.8e-57 224.9 531 35.4
ATR0099G058 Amborella trichopoda HOM05M005732 ORTHO05M005851 3.4e-52 209.5 508 34.3
CDE07G0856 Ceratophyllum demersum HOM05M005732 ORTHO05M005851 2.5e-47 193.4 336 41.4
HPP92_026318 Vanilla planifolia HOM05M005732 ORTHO05M005851 8.1e-46 188.3 173 59.5
HPP92_011049 Vanilla planifolia HOM05M005732 ORTHO05M005851 1.3e-43 181.0 318 41.5
Asa2G04508 Allium sativum HOM05M005732 ORTHO05M005851 1.1e-42 177.9 340 37.6
CALSI_Maker00020359 Calamus simplicifolius HOM05M005732 ORTHO05M005851 2.1e-38 163.7 442 34.8
CALSI_Maker00004353 Calamus simplicifolius HOM05M005732 ORTHO05M005851 5.6e-31 139.0 149 54.4
evm.TU.AsparagusV1_06.339.V1.1 Asparagus officinalis HOM05M005732 ORTHO05M005851 1.4e-18 97.8 94 55.3
Pp3c9_7900 Physcomitrium patens HOM05M015225 ORTHO05M005851 2.1e-17 94.0 202 38.1
HPP92_026319 Vanilla planifolia HOM05M005732 ORTHO05M005851 4.6e-17 92.8 187 36.4
Aco016657 Ananas comosus HOM05M002241 ORTHO05M002823 3.0e-16 90.1 353 26.9
Pp3c15_4070 Physcomitrium patens HOM05M015225 ORTHO05M005851 4.8e-14 82.8 177 37.3
Ma02_g12860 Musa acuminata HOM05M002241 ORTHO05M002823 6.2e-14 82.4 213 33.3
AagrBONN_evm.TU.Sc2ySwM_117.2369 Anthoceros agrestis HOM05M005732 ORTHO05M005851 3.1e-13 80.1 264 29.2
OB04G11960 Oryza brachyantha HOM05M005732 ORTHO05M005851 5.3e-13 79.3 74 73.0
Pp3c6_17560 Physcomitrium patens HOM05M015225 ORTHO05M005851 2.6e-12 77.0 225 32.0
TRIDC5AG073760 Triticum dicoccoides HOM05M002241 ORTHO05M002823 2.6e-12 77.0 285 27.7
TRITD5Av1G246220 Triticum turgidum HOM05M002241 ORTHO05M002823 1.3e-11 74.7 285 27.4
Ma05_g28960 Musa acuminata HOM05M003836 ORTHO05M004097 1.7e-11 74.3 354 27.1
Glyma.05G145700 Glycine max HOM05M002241 ORTHO05M008909 3.8e-11 73.2 338 24.6
TraesCS5A03G1212000 Triticum aestivum HOM05M002241 ORTHO05M002823 3.8e-11 73.2 285 27.0
GWHGASIY030039 Secale cereale HOM05M002241 ORTHO05M002823 8.4e-11 72.0 287 27.2
Zm00001eb166750 Zea mays B73 HOM05M005732 ORTHO05M005851 8.4e-11 72.0 116 44.8
CDE05G1253 Ceratophyllum demersum HOM05M002241 ORTHO05M002823 1.1e-10 71.6 349 26.4
DDU565G0366 Dioscorea dumetorum HOM05M003836 ORTHO05M004097 1.1e-10 71.6 258 28.7
Potri.014G027900 Populus trichocarpa HOM05M002066 ORTHO05M002303 1.4e-10 71.2 231 28.6
Glyma.08G102500 Glycine max HOM05M002241 ORTHO05M008909 2.4e-10 70.5 349 25.2
CDE06G0723 Ceratophyllum demersum HOM05M005732 ORTHO05M005851 3.2e-10 70.1 78 53.8
OB0161G10010 Oryza brachyantha HOM05M007761 ORTHO05M008909 4.2e-10 69.7 350 26.6
GWHGAZTO000197 Oryza alta HOM05M002241 ORTHO05M002823 5.5e-10 69.3 315 27.6
Bradi1g77177 Brachypodium distachyon HOM05M002241 ORTHO05M002823 9.3e-10 68.6 271 29.5
Horvu_MOREX_4H01G507200 Hordeum vulgare HOM05M002241 ORTHO05M002823 1.6e-09 67.8 291 27.1
Sspon.01G0035400-2C Saccharum spontaneum HOM05M002241 ORTHO05M002823 1.6e-09 67.8 264 28.8
TRIDC5BG006930 Triticum dicoccoides HOM05M002241 ORTHO05M004097 1.6e-09 67.8 330 27.6
Potri.005G138500 Populus trichocarpa HOM05M002066 ORTHO05M002303 3.5e-09 66.6 356 25.3
CDE05G0828 Ceratophyllum demersum HOM05M002241 ORTHO05M002823 6.0e-09 65.9 352 25.3
DDU482G0059 Dioscorea dumetorum HOM05M002066 ORTHO05M002303 6.0e-09 65.9 234 28.2
Aco002686 Ananas comosus HOM05M002066 ORTHO05M002303 7.9e-09 65.5 227 30.0
Mapoly0107s0015 Marchantia polymorpha HOM05M005732 ORTHO05M005851 1.0e-08 65.1 192 32.3
HPP92_027214 Vanilla planifolia HOM05M002066 ORTHO05M002303 1.0e-08 65.1 229 28.4
evm.TU.AsparagusV1_08.2336.V1.1 Asparagus officinalis HOM05M002066 ORTHO05M002303 1.3e-08 64.7 231 29.0
GWHGAORA058018 Cenchrus purpureus HOM05M002241 ORTHO05M002823 1.3e-08 64.7 266 27.8
GWHGASIY030040 Secale cereale HOM05M002241 ORTHO05M002823 1.3e-08 64.7 266 27.8
CDE04G1850 Ceratophyllum demersum HOM05M002066 ORTHO05M002303 1.8e-08 64.3 198 27.8
SEGI_21805 Sequoiadendron giganteum HOM05M002241 ORTHO05M002823 1.8e-08 64.3 404 24.8
Glyma.05G095500 Glycine max HOM05M002066 ORTHO05M002303 2.3e-08 63.9 149 31.5
Zm00007a00048117 Zea mays B104 HOM05M002241 ORTHO05M002823 2.3e-08 63.9 301 26.9
Ot_Chr3_g18748 Oropetium thomaeum HOM05M007761 ORTHO05M008909 3.0e-08 63.5 158 29.7
evm.TU.AsparagusV1_07.2818.V1.1 Asparagus officinalis HOM05M002066 ORTHO05M002303 3.9e-08 63.2 339 25.1
Misin08G011000 Miscanthus sinensis HOM05M002241 ORTHO05M002823 3.9e-08 63.2 167 33.5
AET4Gv20812700 Aegilops tauschii HOM05M002241 ORTHO05M002823 6.7e-08 62.4 262 27.5
TraesCS4D03G0798500 Triticum aestivum HOM05M002241 ORTHO05M002823 6.7e-08 62.4 262 27.5
PH02Gene21987 Phyllostachys edulis HOM05M003836 ORTHO05M004097 8.7e-08 62.0 385 24.9
Bradi3g38227 Brachypodium distachyon HOM05M002066 ORTHO05M002303 1.1e-07 61.6 179 30.2
OsKitaake03g018000 Oryza sativa Kitaake HOM05M002241 ORTHO05M002823 1.1e-07 61.6 248 28.2
OsR498G0305135000.01 Oryza sativa ssp. indica HOM05M002241 ORTHO05M002823 1.1e-07 61.6 248 28.2
Os03g0120200 Oryza sativa ssp. japonica HOM05M002241 ORTHO05M002823 1.1e-07 61.6 248 28.2
Aco014830 Ananas comosus HOM05M003836 ORTHO05M004097 1.5e-07 61.2 256 28.9
DDU826G0017 Dioscorea dumetorum HOM05M003836 ORTHO05M004097 1.5e-07 61.2 336 27.1
Pp3c3_21500 Physcomitrium patens HOM05M001151 ORTHO05M001253 1.5e-07 61.2 92 39.1
HPP92_016389 Vanilla planifolia HOM05M002066 ORTHO05M002303 1.5e-07 61.2 229 27.5
V3.Lp_chr2_0G21340 Lolium perenne HOM05M003836 ORTHO05M004097 1.9e-07 60.8 263 27.0
Sspon.02G0031360-3D Saccharum spontaneum HOM05M003836 ORTHO05M004097 2.5e-07 60.5 275 28.0
Zm00001eb209450 Zea mays B73 HOM05M002241 ORTHO05M002823 2.5e-07 60.5 153 34.0
Zm00007a00023749 Zea mays B104 HOM05M002241 ORTHO05M002823 2.5e-07 60.5 153 34.0
evm.TU.AsparagusV1_04.459.V1.1 Asparagus officinalis HOM05M002241 ORTHO05M002823 3.3e-07 60.1 274 26.3
EJB05_28179 Eragrostis curvula HOM05M007761 ORTHO05M008909 3.3e-07 60.1 336 25.0
PH02Gene21645 Phyllostachys edulis HOM05M002066 ORTHO05M002303 3.3e-07 60.1 153 32.0
Sspon.02G0031360-2B Saccharum spontaneum HOM05M003836 ORTHO05M004097 5.6e-07 59.3 277 27.8
SEGI_29969 Sequoiadendron giganteum HOM05M002241 ORTHO05M002823 5.6e-07 59.3 153 33.3
Pp3c27_170 Physcomitrium patens HOM05M015225 ORTHO05M005851 7.4e-07 58.9 160 29.4
Dexi1B01G0001230 Digitaria exilis HOM05M002241 ORTHO05M002823 9.6e-07 58.5 294 26.2
Misin14G164400 Miscanthus sinensis HOM05M003836 ORTHO05M004097 1.3e-06 58.2 282 27.7
Seita.9G563500 Setaria italica HOM05M002241 ORTHO05M002823 1.3e-06 58.2 254 28.7
Zosma03g20050 Zostera marina HOM05M002066 ORTHO05M002303 1.3e-06 58.2 231 27.3
Aco009227 Ananas comosus HOM05M002241 ORTHO05M002823 1.6e-06 57.8 221 29.0
AT2G02170 Arabidopsis thaliana HOM05M002241 ORTHO05M002823 1.6e-06 57.8 277 26.7
GWHGAORA014973 Cenchrus purpureus HOM05M002241 ORTHO05M002823 1.6e-06 57.8 219 27.9
Horvu_MOREX_6H01G054100 Hordeum vulgare HOM05M002241 ORTHO05M002823 1.6e-06 57.8 144 34.7
V3.Lp_chr4_0G27692 Lolium perenne HOM05M002241 ORTHO05M002823 1.6e-06 57.8 307 26.1
Misin07G505200 Miscanthus sinensis HOM05M002066 ORTHO05M002303 1.6e-06 57.8 188 27.7
GWHGASIY023272 Secale cereale HOM05M002241 ORTHO05M002823 1.6e-06 57.8 144 34.7
AET6Gv20118500 Aegilops tauschii HOM05M002241 ORTHO05M002823 2.1e-06 57.4 144 33.3
AT1G30320 Arabidopsis thaliana HOM05M003836 ORTHO05M004097 2.1e-06 57.4 262 27.5
Glyma.17G241500 Glycine max HOM05M002066 ORTHO05M002303 2.1e-06 57.4 385 23.9
V3.Lp_chr7_0.1G5146 Lolium perenne HOM05M002066 ORTHO05M002303 2.1e-06 57.4 228 27.6
GWHGAZTO068020 Oryza alta HOM05M002241 ORTHO05M002823 2.1e-06 57.4 143 34.3
PH02Gene46518 Phyllostachys edulis HOM05M002066 ORTHO05M002303 2.1e-06 57.4 175 29.7
Sspon.04G0020380-4D Saccharum spontaneum HOM05M002241 ORTHO05M002823 2.1e-06 57.4 144 34.0
TraesCS5B03G0109500 Triticum aestivum HOM05M002241 ORTHO05M004097 2.1e-06 57.4 339 23.9
TraesCS6D03G0111500 Triticum aestivum HOM05M002241 ORTHO05M002823 2.1e-06 57.4 144 33.3
TRITD5Bv1G016780 Triticum turgidum HOM05M002241 ORTHO05M004097 2.1e-06 57.4 339 23.9
EJB05_25482 Eragrostis curvula HOM05M002241 ORTHO05M002823 2.8e-06 57.0 149 34.9
Ot_Chr1_g14161 Oropetium thomaeum HOM05M002241 ORTHO05M002823 2.8e-06 57.0 149 34.2
Glyma.08G090800 Glycine max HOM05M002241 ORTHO05M002823 3.7e-06 56.6 361 23.8
Glyma.05G135700 Glycine max HOM05M002241 ORTHO05M002823 4.8e-06 56.2 268 25.4
GWHGAZTO051745 Oryza alta HOM05M002066 ORTHO05M002303 4.8e-06 56.2 153 32.7
OB02G11060 Oryza brachyantha HOM05M002241 ORTHO05M002823 4.8e-06 56.2 280 25.0
PH02Gene21593 Phyllostachys edulis HOM05M002241 ORTHO05M002823 4.8e-06 56.2 258 27.1
Pp3c12_4280 Physcomitrium patens HOM05M001151 ORTHO05M001253 4.8e-06 56.2 92 38.0
Potri.002G125200 Populus trichocarpa HOM05M002066 ORTHO05M002303 4.8e-06 56.2 235 27.2
ATR0824G166 Amborella trichopoda HOM05M002241 ORTHO05M008909 6.2e-06 55.8 268 26.1
GWHGAORA034693 Cenchrus purpureus HOM05M003836 ORTHO05M004097 6.2e-06 55.8 246 26.8
PH02Gene05649 Phyllostachys edulis HOM05M002241 ORTHO05M002823 6.2e-06 55.8 217 28.1
TRITD6Bv1G014080 Triticum turgidum HOM05M002241 ORTHO05M002823 6.2e-06 55.8 145 32.4
Zjn_sc00002.1.g16550.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM05M002241 ORTHO05M002823 6.2e-06 55.8 261 28.0
Ma06_g30130 Musa acuminata HOM05M007761 ORTHO05M008909 8.2e-06 55.5 327 25.7
Sobic.004G309800 Sorghum bicolor HOM05M002066 ORTHO05M002303 8.2e-06 55.5 200 26.5
TraesCS6A03G0104900 Triticum aestivum HOM05M002241 ORTHO05M002823 8.2e-06 55.5 144 33.3
TRIDC6AG005550 Triticum dicoccoides HOM05M002241 ORTHO05M002823 8.2e-06 55.5 144 33.3
TRIDC6BG008070 Triticum dicoccoides HOM05M002241 ORTHO05M002823 8.2e-06 55.5 144 33.3
TRITD6Av1G008550 Triticum turgidum HOM05M002241 ORTHO05M002823 8.2e-06 55.5 144 33.3


User provided reference genes

Program Settings