Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
OsKitaake11g191700 Oryza sativa Kitaake HOM05M000703 ORTHO05M006705 1.8e-120 435.3 231 100.0
Os11g0604700 Oryza sativa ssp. japonica HOM05M000703 ORTHO05M006705 1.8e-120 435.3 231 100.0
GWHGAZTO012676 Oryza alta HOM05M000703 ORTHO05M006705 1.5e-119 432.2 231 99.1
OsR498G1120482700.01 Oryza sativa ssp. indica HOM05M000703 ORTHO05M006705 3.3e-119 431.0 231 99.1
OB11G24730 Oryza brachyantha HOM05M000703 ORTHO05M006705 5.3e-117 423.7 231 96.1
OsR498G0510164300.01 Oryza sativa ssp. indica HOM05M000703 ORTHO05M006705 2.0e-116 421.8 231 95.7
Os05g0255600 Oryza sativa ssp. japonica HOM05M000703 ORTHO05M006705 2.0e-116 421.8 231 95.7
PH02Gene24576 Phyllostachys edulis HOM05M000703 ORTHO05M006705 2.0e-111 405.2 232 94.4
PH02Gene27285 Phyllostachys edulis HOM05M000703 ORTHO05M006705 4.4e-111 404.1 232 94.0
Seita.8G183700 Setaria italica HOM05M000703 ORTHO05M006705 3.8e-107 391.0 231 89.6
Sevir.8G192400 Setaria viridis HOM05M000703 ORTHO05M006705 3.8e-107 391.0 231 89.6
Misin09G169600 Miscanthus sinensis HOM05M000703 ORTHO05M006705 6.5e-107 390.2 231 89.6
Zm00007a00022896 Zea mays B104 HOM05M000703 ORTHO05M006705 6.5e-107 390.2 231 90.9
EJB05_26839 Eragrostis curvula HOM05M000703 ORTHO05M006705 2.5e-106 388.3 231 87.9
EJB05_26868 Eragrostis curvula HOM05M000703 ORTHO05M006705 2.5e-106 388.3 231 87.9
Sspon.06G0016820-2B Saccharum spontaneum HOM05M000703 ORTHO05M006705 4.2e-106 387.5 231 90.0
Sspon.06G0016820-4D Saccharum spontaneum HOM05M000703 ORTHO05M006705 9.4e-106 386.3 231 89.6
Bradi4g14050 Brachypodium distachyon HOM05M000703 ORTHO05M006705 2.1e-105 385.2 231 87.0
Pahal.8G227800 Panicum hallii HOM05M000703 ORTHO05M006705 8.0e-105 383.3 231 88.7
Sspon.06G0016820-3C Saccharum spontaneum HOM05M000703 ORTHO05M006705 1.4e-104 382.5 230 88.7
Zm00001eb167250 Zea mays B73 HOM05M000703 ORTHO05M006705 1.4e-104 382.5 231 88.7
Zm00007a00046349 Zea mays B104 HOM05M000703 ORTHO05M006705 1.4e-104 382.5 231 88.7
Misin10G190100 Miscanthus sinensis HOM05M000703 ORTHO05M006705 5.2e-104 380.6 231 87.9
GWHGAORA001159 Cenchrus purpureus HOM05M000703 ORTHO05M006705 8.3e-102 373.2 204 91.2
DexiUA01G0006970 Digitaria exilis HOM05M000703 ORTHO05M006705 1.1e-101 372.9 231 86.1
GWHGAZTO064725 Oryza alta HOM05M000703 ORTHO05M006705 1.2e-100 369.4 194 97.4
Ma02_g16630 Musa acuminata HOM05M000703 ORTHO05M006705 1.5e-98 362.5 232 80.2
Sspon.06G0016820-1A Saccharum spontaneum HOM05M000703 ORTHO05M006705 1.9e-98 362.1 195 93.3
p5.00_sc00054_p0054 Elaeis guineensis HOM05M000703 ORTHO05M006705 7.2e-98 360.1 233 78.1
evm.TU.AsparagusV1_07.2285.V1.1 Asparagus officinalis HOM05M000703 ORTHO05M006705 1.0e-96 356.3 231 79.2
p5.00_sc00031_p0020 Elaeis guineensis HOM05M000703 ORTHO05M006705 1.2e-95 352.8 231 77.5
GWHGAZTO082577 Oryza alta HOM05M000703 ORTHO05M006705 2.6e-95 351.7 200 90.5
V3.Lp_chr4_0G14838 Lolium perenne HOM05M000703 ORTHO05M006705 9.8e-95 349.7 231 80.5
Solyc02g062540.3 Solanum lycopersicum HOM05M000703 ORTHO05M006705 9.8e-95 349.7 231 78.4
AET7Gv20362000 Aegilops tauschii HOM05M000703 ORTHO05M006705 3.7e-94 347.8 231 79.7
Aco000171 Ananas comosus HOM05M000703 ORTHO05M006705 6.3e-94 347.1 269 68.8
TRIDC7AG017080 Triticum dicoccoides HOM05M000703 ORTHO05M006705 8.3e-94 346.7 231 79.2
TRITD7Av1G042300 Triticum turgidum HOM05M000703 ORTHO05M006705 8.3e-94 346.7 231 79.2
Spipo15G0007500 Spirodela polyrhiza HOM05M000703 ORTHO05M006705 1.1e-93 346.3 231 78.4
AT5G66410 Arabidopsis thaliana HOM05M000703 ORTHO05M006705 1.8e-93 345.5 231 74.5
Horvu_MOREX_7H01G157500 Hordeum vulgare HOM05M000703 ORTHO05M006705 2.4e-93 345.1 231 79.2
GWHGASIY021413 Secale cereale HOM05M000703 ORTHO05M006705 3.1e-93 344.7 231 79.2
GWHGASIY021417 Secale cereale HOM05M000703 ORTHO05M006705 3.1e-93 344.7 231 79.2
CALSI_Maker00011565 Calamus simplicifolius HOM05M000703 ORTHO05M006705 7.0e-93 343.6 261 70.9
TraesCS7B03G0116400 Triticum aestivum HOM05M000703 ORTHO05M006705 1.2e-92 342.8 231 78.8
TRIDC7BG006470 Triticum dicoccoides HOM05M000703 ORTHO05M006705 1.2e-92 342.8 231 78.8
TRITD7Bv1G016020 Triticum turgidum HOM05M000703 ORTHO05M006705 1.2e-92 342.8 231 78.8
Potri.007G020400 Populus trichocarpa HOM05M000703 ORTHO05M006705 5.9e-92 340.5 231 76.6
Asa6G06358 Allium sativum HOM05M000703 ORTHO05M006705 7.8e-92 340.1 201 81.6
AT3G50960 Arabidopsis thaliana HOM05M000703 ORTHO05M006705 8.6e-91 336.7 231 73.6
Glyma.14G219400 Glycine max HOM05M000703 ORTHO05M006705 1.9e-90 335.5 230 73.9
Glyma.02G053300 Glycine max HOM05M000703 ORTHO05M006705 5.6e-90 334.0 230 74.8
ATR0564G141 Amborella trichopoda HOM05M000703 ORTHO05M006705 2.1e-89 332.0 232 72.0
Dexi8A01G0014610 Digitaria exilis HOM05M000703 ORTHO05M006705 4.0e-88 327.8 211 80.6
DexiUA01G0006930 Digitaria exilis HOM05M000703 ORTHO05M006705 4.0e-88 327.8 211 80.6
DexiUA01G0003180 Digitaria exilis HOM05M000703 ORTHO05M006705 2.0e-87 325.5 203 85.7
CDE10G0804 Ceratophyllum demersum HOM05M000703 ORTHO05M006705 9.2e-85 316.6 231 68.8
OsKitaake05g089100 Oryza sativa Kitaake HOM05M000703 ORTHO05M006705 9.2e-85 316.6 162 98.1
Zosma03g33640 Zostera marina HOM05M000703 ORTHO05M006705 5.9e-84 313.9 231 68.0
CDE10G0985 Ceratophyllum demersum HOM05M000703 ORTHO05M006705 7.8e-84 313.5 231 66.7
Sobic.005G180800 Sorghum bicolor HOM05M000703 ORTHO05M006705 3.1e-80 301.6 162 92.6
Mapoly0077s0014 Marchantia polymorpha HOM05M000703 ORTHO05M006705 7.3e-74 280.4 231 61.5
MBI02_g37834_MAGBIO Magnolia biondii HOM05M000703 ORTHO05M006705 1.6e-73 279.3 215 70.7
SMO164G0166 Selaginella moellendorffii HOM05M000703 ORTHO05M006705 3.1e-72 275.0 233 62.2
Pp3c17_20760 Physcomitrium patens HOM05M000703 ORTHO05M006705 4.9e-70 267.7 232 59.1
GWHGAORA043405 Cenchrus purpureus HOM05M000703 ORTHO05M006705 1.9e-69 265.8 200 72.5
GWHGAORA001223 Cenchrus purpureus HOM05M000703 ORTHO05M006705 4.6e-68 261.2 236 63.6
Zm00001eb115010 Zea mays B73 HOM05M000703 ORTHO05M001154 5.1e-67 257.7 152 89.5
DDU049G0604 Dioscorea dumetorum HOM05M000703 ORTHO05M006705 6.6e-67 257.3 150 84.0
MCO09G765 Micromonas commoda HOM05M000703 ORTHO05M006705 9.6e-58 226.9 204 54.9
DDU049G0057 Dioscorea dumetorum HOM05M000703 ORTHO05M006705 9.0e-56 220.3 243 55.1
GWHGAZTO033573 Oryza alta HOM05M000703 ORTHO05M006705 1.7e-51 206.1 229 59.8
PRCOL_00002644 Prasinoderma coloniale HOM05M000703 ORTHO05M006705 9.9e-47 190.3 230 44.8
Cre17.g717750 Chlamydomonas reinhardtii HOM05M000703 ORTHO05M006705 1.7e-46 189.5 199 50.8
CBR_g943 Chara braunii HOM05M000703 ORTHO05M006705 1.5e-42 176.4 206 49.0
Zm00007a00028956 Zea mays B104 HOM05M000703 ORTHO05M001706 3.8e-38 161.8 127 76.4
Zm00001eb382800 Zea mays B73 HOM05M000703 ORTHO05M001706 6.4e-38 161.0 117 80.3
Zm00007a00031035 Zea mays B104 HOM05M000703 ORTHO05M001706 1.9e-37 159.5 115 80.0
Zm00001eb426440 Zea mays B73 HOM05M000703 ORTHO05M006705 7.1e-37 157.5 117 78.6
Zjn_sc00096.1.g01780.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM05M000703 ORTHO05M006705 2.1e-33 146.0 103 77.7
AET4Gv20333500 Aegilops tauschii HOM05M000703 ORTHO05M006705 1.1e-32 143.7 110 75.5
Pp3c8_16300 Physcomitrium patens HOM05M000703 ORTHO05M006934 2.4e-32 142.5 185 47.0
Zm00007a00021757 Zea mays B104 HOM05M001851 ORTHO05M022904 2.6e-31 139.0 89 77.5
AT3G25580 Arabidopsis thaliana HOM05M000703 ORTHO05M006934 3.4e-31 138.7 209 40.2
AT2G18990 Arabidopsis thaliana HOM05M000703 ORTHO05M006934 1.0e-30 137.1 209 40.2
Zm00007a00037042 Zea mays B104 HOM05M000703 ORTHO05M006705 1.3e-30 136.7 111 74.8
Ma09_g21790 Musa acuminata HOM05M000703 ORTHO05M006934 1.1e-29 133.7 211 41.2
Asa6G04342 Allium sativum HOM05M000703 ORTHO05M006934 2.5e-29 132.5 208 38.9
GWHGAORA012484 Cenchrus purpureus HOM05M000703 ORTHO05M006934 2.5e-29 132.5 208 38.0
Pahal.6G091600 Panicum hallii HOM05M000703 ORTHO05M006934 2.5e-29 132.5 208 37.5
Seita.6G095500 Setaria italica HOM05M000703 ORTHO05M006934 3.2e-29 132.1 208 38.0
Sevir.6G103600 Setaria viridis HOM05M000703 ORTHO05M006934 3.2e-29 132.1 208 38.0
DDU556G0372 Dioscorea dumetorum HOM05M000703 ORTHO05M006934 4.2e-29 131.7 208 38.5
HPP92_024630 Vanilla planifolia HOM05M000703 ORTHO05M006934 5.5e-29 131.3 208 38.9
Zjn_sc00110.1.g00720.1.am.mkhc Zoysia japonica ssp. nagirizaki HOM05M000703 ORTHO05M006934 7.1e-29 131.0 210 38.1
GWHGAORA036222 Cenchrus purpureus HOM05M000703 ORTHO05M006934 9.3e-29 130.6 208 37.5
MBI14_g09419_MAGBIO Magnolia biondii HOM05M000703 ORTHO05M006934 1.6e-28 129.8 210 40.0
Zosma05g29760 Zostera marina HOM05M000703 ORTHO05M006934 1.6e-28 129.8 187 39.0
Aco006506 Ananas comosus HOM05M000703 ORTHO05M006934 2.1e-28 129.4 206 39.3
Glyma.10G259900 Glycine max HOM05M000703 ORTHO05M006934 2.7e-28 129.0 209 39.2
GWHGAZTO094075 Oryza alta HOM05M000703 ORTHO05M006934 2.7e-28 129.0 208 38.5
p5.00_sc00020_p0050 Elaeis guineensis HOM05M000703 ORTHO05M006934 4.6e-28 128.3 207 40.1
Solyc11g012730.3 Solanum lycopersicum HOM05M000703 ORTHO05M006934 4.6e-28 128.3 209 39.7
Zm00001eb178370 Zea mays B73 HOM05M000703 ORTHO05M006934 4.6e-28 128.3 208 36.5
Sspon.06G0008290-1T Saccharum spontaneum HOM05M000703 ORTHO05M006934 6.0e-28 127.9 207 36.7
Zosma01g19100 Zostera marina HOM05M000703 ORTHO05M006934 6.0e-28 127.9 177 39.5
Dexi6A01G0009370 Digitaria exilis HOM05M000703 ORTHO05M006934 7.9e-28 127.5 208 37.5
Dexi6B01G0008100 Digitaria exilis HOM05M000703 ORTHO05M006934 7.9e-28 127.5 208 37.5
OB08G17380 Oryza brachyantha HOM05M000703 ORTHO05M006934 7.9e-28 127.5 208 38.9
AET3Gv20890300 Aegilops tauschii HOM05M000703 ORTHO05M006934 1.0e-27 127.1 207 37.2
CDE04G1739 Ceratophyllum demersum HOM05M000703 ORTHO05M006934 1.0e-27 127.1 210 39.5
CBR_g41441 Chara braunii HOM05M000703 ORTHO05M006934 1.0e-27 127.1 172 42.4
Mapoly0048s0065 Marchantia polymorpha HOM05M000703 ORTHO05M006934 1.0e-27 127.1 179 41.3
Ma01_g00900 Musa acuminata HOM05M000703 ORTHO05M006934 1.0e-27 127.1 211 38.9
Sspon.06G0008290-2B Saccharum spontaneum HOM05M000703 ORTHO05M006934 1.0e-27 127.1 208 37.0
TraesCS3D03G0868900 Triticum aestivum HOM05M000703 ORTHO05M006934 1.0e-27 127.1 207 37.2
Bradi3g19070 Brachypodium distachyon HOM05M000703 ORTHO05M006934 1.3e-27 126.7 207 36.2
Sobic.007G091000 Sorghum bicolor HOM05M000703 ORTHO05M006934 1.3e-27 126.7 207 36.2
Spipo3G0090200 Spirodela polyrhiza HOM05M000703 ORTHO05M006934 1.3e-27 126.7 174 40.8
TRIDC3BG063820 Triticum dicoccoides HOM05M000703 ORTHO05M006934 1.8e-27 126.3 223 36.3
Glyma.20G131000 Glycine max HOM05M000703 ORTHO05M006934 2.3e-27 125.9 209 38.3
Horvu_MOREX_3H01G558100 Hordeum vulgare HOM05M000703 ORTHO05M006934 2.3e-27 125.9 173 38.7
Ot_Chr9_g13887 Oropetium thomaeum HOM05M000703 ORTHO05M006934 2.3e-27 125.9 207 36.7
OsR498G0815547500.01 Oryza sativa ssp. indica HOM05M000703 ORTHO05M006934 2.3e-27 125.9 208 37.5
Os08g0250700 Oryza sativa ssp. japonica HOM05M000703 ORTHO05M006934 2.3e-27 125.9 208 37.5
Sspon.06G0008290-1A Saccharum spontaneum HOM05M000703 ORTHO05M006934 2.3e-27 125.9 208 37.0
TraesCS3A03G0937000 Triticum aestivum HOM05M000703 ORTHO05M006934 2.3e-27 125.9 207 36.7
TraesCS3B03G1066000 Triticum aestivum HOM05M000703 ORTHO05M006934 2.3e-27 125.9 207 36.7
TRIDC3AG056900 Triticum dicoccoides HOM05M000703 ORTHO05M006934 2.3e-27 125.9 217 37.3
TRITD3Av1G233100 Triticum turgidum HOM05M000703 ORTHO05M006934 2.3e-27 125.9 217 37.3
TRITD3Bv1G221490 Triticum turgidum HOM05M000703 ORTHO05M006934 2.3e-27 125.9 207 36.7
evm.TU.AsparagusV1_05.2533.V1.1 Asparagus officinalis HOM05M000703 ORTHO05M006934 3.0e-27 125.6 210 38.1
V3.Lp_chr7_0.1G6418 Lolium perenne HOM05M000703 ORTHO05M006934 3.0e-27 125.6 216 36.6
Misin13G071000 Miscanthus sinensis HOM05M000703 ORTHO05M006934 3.0e-27 125.6 211 35.5
GWHGAZTO047400 Oryza alta HOM05M000703 ORTHO05M006934 3.0e-27 125.6 208 37.5
GWHGASIY016995 Secale cereale HOM05M000703 ORTHO05M006934 3.9e-27 125.2 207 36.2
CALSI_Maker00026947 Calamus simplicifolius HOM05M000703 ORTHO05M006934 6.7e-27 124.4 208 38.5
PH02Gene48603 Phyllostachys edulis HOM05M000703 ORTHO05M006934 6.7e-27 124.4 207 36.2
EJB05_08562 Eragrostis curvula HOM05M000703 ORTHO05M006934 8.7e-27 124.0 220 36.4
Cre01.g037800 Chlamydomonas reinhardtii HOM05M000703 ORTHO05M006934 1.5e-26 123.2 180 40.6
ATR0753G080 Amborella trichopoda HOM05M000703 ORTHO05M006934 3.3e-26 122.1 212 39.6
Misin07G149700 Miscanthus sinensis HOM05M000703 ORTHO05M006934 4.3e-26 121.7 207 35.7
Potri.001G297900 Populus trichocarpa HOM05M000703 ORTHO05M006934 7.4e-26 120.9 207 36.2
CDE02G0142 Ceratophyllum demersum HOM05M000703 ORTHO05M006934 1.3e-25 120.2 207 39.1
Potri.009G092700 Populus trichocarpa HOM05M000703 ORTHO05M006934 2.2e-25 119.4 210 36.7
OsKitaake08g086000 Oryza sativa Kitaake HOM05M000703 ORTHO05M006934 5.3e-24 114.8 165 40.0
Zm00001eb411660 Zea mays B73 HOM05M000703 ORTHO05M016591 6.9e-24 114.4 92 77.2
Sspon.06G0008290-4D Saccharum spontaneum HOM05M000703 ORTHO05M006934 9.0e-24 114.0 164 38.4
SMO367G0382 Selaginella moellendorffii HOM05M000703 ORTHO05M006934 1.2e-23 113.6 165 40.6
AagrBONN_evm.TU.Sc2ySwM_228.3117 Anthoceros agrestis HOM05M000703 ORTHO05M006934 3.4e-23 112.1 164 39.6
CALSI_Maker00023190 Calamus simplicifolius HOM05M000703 ORTHO05M006934 3.4e-23 112.1 208 36.1
MCO11G837 Micromonas commoda HOM05M000703 ORTHO05M006934 3.4e-23 112.1 169 37.9
Zm00001eb145060 Zea mays B73 HOM05M001851 ORTHO05M022904 4.5e-23 111.7 95 72.6
Zm00007a00039686 Zea mays B104 HOM05M001851 ORTHO05M022904 4.5e-23 111.7 95 72.6
PRCOL_00005050 Prasinoderma coloniale HOM05M000703 ORTHO05M006934 7.6e-23 110.9 184 38.0
Zm00007a00008911 Zea mays B104 HOM05M000703 ORTHO05M016591 1.0e-22 110.5 91 75.8
Zm00001eb028150 Zea mays B73 HOM05M001851 ORTHO05M022904 1.7e-22 109.8 97 72.2
Zm00001eb342480 Zea mays B73 HOM05M003915 ORTHO05M012873 2.1e-20 102.8 112 60.7
Zm00007a00037155 Zea mays B104 HOM05M000703 ORTHO05M012873 2.1e-20 102.8 112 60.7
Zm00007a00043373 Zea mays B104 HOM05M000703 ORTHO05M012873 2.1e-20 102.8 112 60.7
MBI14_g22154_MAGBIO Magnolia biondii HOM05M000703 ORTHO05M006934 1.0e-19 100.5 164 39.0
Glyma.15G219600 Glycine max HOM05M000703 ORTHO05M006934 1.1e-18 97.1 142 40.1
p5.00_sc00005_p0180 Elaeis guineensis HOM05M000703 ORTHO05M006934 3.3e-18 95.5 208 34.6
DDU049G0119 Dioscorea dumetorum HOM05M000703 ORTHO05M016591 2.2e-14 82.8 70 62.9
DDU376G0003 Dioscorea dumetorum HOM05M000703 ORTHO05M016591 2.2e-14 82.8 73 56.2
EJB05_08567 Eragrostis curvula HOM05M000703 ORTHO05M006934 6.5e-14 81.3 305 25.2
MBI16_g19187_MAGBIO Magnolia biondii HOM05M000703 ORTHO05M016591 1.2e-12 77.0 95 54.7
MBI09_g12803_MAGBIO Magnolia biondii HOM05M000703 ORTHO05M012873 2.1e-12 76.3 69 56.5
Zm00007a00040771 Zea mays B104 HOM05M000703 ORTHO05M006934 2.7e-12 75.9 116 37.9
SEGI_15660 Sequoiadendron giganteum HOM05M000703 ORTHO05M006934 7.9e-12 74.3 115 37.4
CALSI_Maker00002263 Calamus simplicifolius HOM05M000703 ORTHO05M012873 1.0e-11 73.9 46 71.7
Sspon.06G0008290-3C Saccharum spontaneum HOM05M000703 ORTHO05M006934 1.0e-11 73.9 115 37.4
MBI12_g21442_MAGBIO Magnolia biondii HOM05M000703 ORTHO05M012873 1.8e-11 73.2 67 58.2
Zm00007a00049691 Zea mays B104 HOM05M000703 ORTHO05M016591 1.8e-11 73.2 71 73.2
Zm00007a00017600 Zea mays B104 HOM05M000597 ORTHO05M000528 8.8e-11 70.9 65 73.8
MBI06_g27715_MAGBIO Magnolia biondii HOM05M000703 ORTHO05M012873 7.4e-10 67.8 50 64.0
Asa6G06362 Allium sativum HOM05M000703 ORTHO05M016591 2.8e-09 65.9 39 76.9
MBI17_g30593_MAGBIO Magnolia biondii HOM05M002253 ORTHO05M012873 3.1e-08 62.4 64 53.1
MBI18_g20587_MAGBIO Magnolia biondii HOM05M000703 ORTHO05M012873 1.5e-07 60.1 57 52.6
MBI15_g04257_MAGBIO Magnolia biondii HOM05M000703 ORTHO05M012873 2.6e-07 59.3 64 51.6


User provided reference genes

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