Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0572900 Oryza sativa ssp. japonica HOM05M003551 ORTHO05M004505 2.4e-79 298.1 162 100.0
GWHGAZTO064511 Oryza alta HOM05M003551 ORTHO05M004505 4.7e-51 204.1 189 64.6
OsR498G1120394800.01 Oryza sativa ssp. indica HOM05M003551 ORTHO05M004505 8.8e-50 199.9 118 92.4
GWHGAZTO036521 Oryza alta HOM05M003551 ORTHO05M004505 1.7e-37 159.1 116 68.1
PH02Gene34934 Phyllostachys edulis HOM05M003551 ORTHO05M004505 2.9e-37 158.3 93 83.9
Horvu_MOREX_1H01G619400 Hordeum vulgare HOM05M003551 ORTHO05M004505 5.0e-37 157.5 108 74.1
Sevir.4G268800 Setaria viridis HOM05M003551 ORTHO05M004505 5.0e-37 157.5 119 70.6
OB05G35740 Oryza brachyantha HOM05M003551 ORTHO05M004505 8.5e-37 156.8 119 71.4
V3.Lp_chr4_0G19734 Lolium perenne HOM05M003551 ORTHO05M004505 3.2e-36 154.8 112 70.5
Seita.4G257700 Setaria italica HOM05M003551 ORTHO05M004505 4.2e-36 154.5 119 69.7
EJB05_21288 Eragrostis curvula HOM05M003551 ORTHO05M004505 5.5e-36 154.1 119 70.6
TraesCS1B03G1281000 Triticum aestivum HOM05M003551 ORTHO05M004505 5.5e-36 154.1 130 66.2
TRIDC1BG074570 Triticum dicoccoides HOM05M003551 ORTHO05M004505 5.5e-36 154.1 130 66.2
TRITD1Bv1G228410 Triticum turgidum HOM05M003551 ORTHO05M004505 5.5e-36 154.1 130 66.2
Bradi2g14160 Brachypodium distachyon HOM05M003551 ORTHO05M004505 7.2e-36 153.7 116 69.8
AET1Gv21048100 Aegilops tauschii HOM05M003551 ORTHO05M004505 9.4e-36 153.3 108 74.1
GWHGAORA029052 Cenchrus purpureus HOM05M003551 ORTHO05M004505 9.4e-36 153.3 119 68.9
TraesCS1D03G1045100 Triticum aestivum HOM05M003551 ORTHO05M004505 9.4e-36 153.3 108 74.1
EJB05_42002 Eragrostis curvula HOM05M003551 ORTHO05M004505 1.2e-35 152.9 115 71.3
Pahal.4G038400 Panicum hallii HOM05M003551 ORTHO05M004505 1.2e-35 152.9 119 68.1
GWHGAZTO085419 Oryza alta HOM05M003551 ORTHO05M004505 1.6e-35 152.5 116 68.1
TraesCS1A03G1084000 Triticum aestivum HOM05M003551 ORTHO05M004505 1.6e-35 152.5 113 71.7
TRIDC1AG065290 Triticum dicoccoides HOM05M003551 ORTHO05M004505 1.6e-35 152.5 141 60.3
TRITD1Av1G231040 Triticum turgidum HOM05M003551 ORTHO05M004505 2.1e-35 152.1 109 73.4
GWHGAORA057419 Cenchrus purpureus HOM05M003551 ORTHO05M004505 2.7e-35 151.8 119 68.1
Dexi4B01G0020790 Digitaria exilis HOM05M003551 ORTHO05M004505 2.3e-34 148.7 113 69.9
Misin18G236900 Miscanthus sinensis HOM05M003551 ORTHO05M004505 5.2e-34 147.5 119 67.2
Misin19G265600 Miscanthus sinensis HOM05M003551 ORTHO05M004505 6.8e-34 147.1 116 67.2
Sobic.010G236200 Sorghum bicolor HOM05M003551 ORTHO05M004505 6.8e-34 147.1 119 67.2
Ot_Chr2_g15546 Oropetium thomaeum HOM05M003551 ORTHO05M004505 1.2e-33 146.4 118 66.9
OsKitaake05g288400 Oryza sativa Kitaake HOM05M003551 ORTHO05M004505 1.2e-33 146.4 86 82.6
OsR498G0511460400.01 Oryza sativa ssp. indica HOM05M003551 ORTHO05M004505 1.2e-33 146.4 86 82.6
Os05g0596600 Oryza sativa ssp. japonica HOM05M003551 ORTHO05M004505 1.2e-33 146.4 86 82.6
V3.Lp_chr1_0G17936 Lolium perenne HOM05M003551 ORTHO05M004505 1.5e-33 146.0 130 60.8
Dexi4B01G0020800 Digitaria exilis HOM05M003551 ORTHO05M004505 2.0e-33 145.6 113 69.0
Zm00001eb225540 Zea mays B73 HOM05M003551 ORTHO05M004505 2.0e-33 145.6 115 68.7
Zm00007a00007232 Zea mays B104 HOM05M003551 ORTHO05M004505 2.0e-33 145.6 115 68.7
Misin03G147300 Miscanthus sinensis HOM05M003551 ORTHO05M004505 9.8e-33 143.3 118 65.3
Horvu_MOREX_7H01G394200 Hordeum vulgare HOM05M003551 ORTHO05M004505 1.1e-31 139.8 110 68.2
Horvu_MOREX_7H01G511700 Hordeum vulgare HOM05M003551 ORTHO05M004505 1.1e-31 139.8 110 68.2
MBI11_g23277_MAGBIO Magnolia biondii HOM05M003551 ORTHO05M004505 1.8e-31 139.0 89 73.0
DDU272G0149 Dioscorea dumetorum HOM05M003551 ORTHO05M004505 4.1e-31 137.9 111 62.2
DDU336G0029 Dioscorea dumetorum HOM05M003551 ORTHO05M004505 4.1e-31 137.9 111 62.2
Asa7G02365 Allium sativum HOM05M003551 ORTHO05M004505 5.4e-31 137.5 112 63.4
CALSI_Maker00020597 Calamus simplicifolius HOM05M003551 ORTHO05M004505 5.4e-31 137.5 87 74.7
Glyma.20G198300 Glycine max HOM05M003551 ORTHO05M004505 5.4e-31 137.5 91 69.2
Horvu_MOREX_5H01G537900 Hordeum vulgare HOM05M003551 ORTHO05M004505 5.4e-31 137.5 110 67.3
Horvu_MOREX_5H01G182400 Hordeum vulgare HOM05M003551 ORTHO05M004505 9.1e-31 136.7 86 77.9
Ma04_g00340 Musa acuminata HOM05M003551 ORTHO05M004505 9.1e-31 136.7 111 64.0
Aco007261 Ananas comosus HOM05M003551 ORTHO05M004505 1.2e-30 136.3 111 63.1
evm.TU.AsparagusV1_02.1904.V1.1 Asparagus officinalis HOM05M003551 ORTHO05M004505 1.2e-30 136.3 111 64.9
p5.00_sc00086_p0027 Elaeis guineensis HOM05M003551 ORTHO05M004505 1.6e-30 136.0 111 64.0
Potri.001G262600 Populus trichocarpa HOM05M003551 ORTHO05M004505 2.7e-30 135.2 88 70.5
ATR0626G229 Amborella trichopoda HOM05M003551 ORTHO05M004505 1.7e-29 132.5 91 65.9
Solyc01g087720.4 Solanum lycopersicum HOM05M003551 ORTHO05M004505 1.7e-29 132.5 111 61.3
AT5G15920 Arabidopsis thaliana HOM05M003551 ORTHO05M004505 2.2e-29 132.1 89 68.5
Spipo4G0033900 Spirodela polyrhiza HOM05M003551 ORTHO05M004505 3.8e-29 131.3 87 70.1
Zosma01g42430 Zostera marina HOM05M003551 ORTHO05M004505 8.5e-29 130.2 85 71.8
Dexi4A01G0021490 Digitaria exilis HOM05M003551 ORTHO05M004505 1.9e-28 129.0 103 67.0
Asa0G03282 Allium sativum HOM05M003551 ORTHO05M004505 7.2e-28 127.1 112 57.1
SEGI_00270 Sequoiadendron giganteum HOM05M003551 ORTHO05M004505 7.2e-28 127.1 125 55.2
HPP92_016892 Vanilla planifolia HOM05M002216 ORTHO05M007975 1.2e-27 126.3 111 58.6
Mapoly0007s0066 Marchantia polymorpha HOM05M003551 ORTHO05M004505 3.6e-27 124.8 112 58.0
SEGI_29436 Sequoiadendron giganteum HOM05M003551 ORTHO05M004505 1.0e-26 123.2 87 65.5
Sspon.08G0003370-3C Saccharum spontaneum HOM05M003551 ORTHO05M004505 5.2e-26 120.9 119 59.7
Sspon.08G0003380-2B Saccharum spontaneum HOM05M003551 ORTHO05M004505 5.2e-26 120.9 119 59.7
Sspon.08G0003380-3D Saccharum spontaneum HOM05M003551 ORTHO05M004505 5.2e-26 120.9 119 59.7
EJB05_14464 Eragrostis curvula HOM05M003551 ORTHO05M004505 8.8e-26 120.2 86 66.3
EJB05_29085 Eragrostis curvula HOM05M003551 ORTHO05M004505 2.6e-25 118.6 91 62.6
Pp3c24_4940 Physcomitrium patens HOM05M003551 ORTHO05M004505 1.7e-24 115.9 114 53.5
AagrBONN_evm.TU.Sc2ySwM_344.2054 Anthoceros agrestis HOM05M003551 ORTHO05M004505 2.8e-24 115.2 125 49.6
Zjn_sc00068.1.g01430.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM05M003551 ORTHO05M004505 2.4e-23 112.1 90 67.8
Os11g0577350 Oryza sativa ssp. japonica HOM05M003551 ORTHO05M004505 1.6e-22 109.4 89 76.4
Dexi4A01G0021440 Digitaria exilis HOM05M003551 ORTHO05M004505 7.7e-22 107.1 84 67.9
SMO143G0265 Selaginella moellendorffii HOM05M003551 ORTHO05M004505 3.8e-21 104.8 83 56.6
CDE09G1121 Ceratophyllum demersum HOM05M003551 ORTHO05M004505 3.3e-20 101.7 66 71.2
MCO04G035 Micromonas commoda HOM05M003551 ORTHO05M004505 3.3e-20 101.7 112 47.3
PRCOL_00002930 Prasinoderma coloniale HOM05M003551 ORTHO05M004505 3.0e-18 95.1 108 47.2
CBR_g88572 Chara braunii HOM05M003551 ORTHO05M000001 1.2e-14 83.2 59 64.4
PH02Gene37676 Phyllostachys edulis HOM05M003551 ORTHO05M004505 3.9e-13 78.2 127 45.7
EJB05_50313 Eragrostis curvula HOM05M003551 ORTHO05M004505 3.6e-11 71.6 86 45.3
Cre10.g440200 Chlamydomonas reinhardtii HOM05M003551 ORTHO05M004505 6.2e-11 70.9 82 46.3
Cre10.g440300 Chlamydomonas reinhardtii HOM05M003551 ORTHO05M004505 9.8e-09 63.5 86 38.4
MCO11G708 Micromonas commoda HOM05M003538 ORTHO05M004475 3.2e-07 58.5 86 33.7
GWHGAZTO012488 Oryza alta HOM05M003551 ORTHO05M004505 5.4e-07 57.8 110 40.9


User provided reference genes

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