Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0549605 Oryza sativa ssp. japonica HOM05M007622 ORTHO05M012749 0.0e+00 1617.1 792 100.0
OsKitaake11g161300 Oryza sativa Kitaake HOM05M007622 ORTHO05M012749 0.0e+00 1514.6 847 89.7
GWHGAZTO064420 Oryza alta HOM05M007622 ORTHO05M012749 0.0e+00 1239.6 816 78.2
GWHGAZTO040054 Oryza alta HOM05M007622 ORTHO05M012749 1.0e-228 796.6 592 71.8
OB11G22680 Oryza brachyantha HOM05M007622 ORTHO05M012749 2.8e-226 788.5 750 57.9
OsKitaake11g161400 Oryza sativa Kitaake HOM05M007622 ORTHO05M012749 1.7e-202 709.5 698 57.4
GWHGAZTO064419 Oryza alta HOM05M007622 ORTHO05M012749 3.4e-179 632.1 699 53.6
OsR498G1120327500.01 Oryza sativa ssp. indica HOM05M007622 ORTHO05M012749 1.1e-169 600.5 372 81.5
OsR498G1120327700.01 Oryza sativa ssp. indica HOM05M007622 ORTHO05M012749 6.4e-162 574.7 550 56.9
Os07g0514400 Oryza sativa ssp. japonica HOM05M007622 ORTHO05M012749 8.4e-162 574.3 860 44.2
OB11G22690 Oryza brachyantha HOM05M007622 ORTHO05M012749 1.9e-161 573.2 764 46.7
Os11g0549610 Oryza sativa ssp. japonica HOM05M007622 ORTHO05M012749 1.5e-147 526.9 598 53.2
OsKitaake07g160500 Oryza sativa Kitaake HOM05M007622 ORTHO05M012749 3.5e-128 462.6 563 50.4
PH02Gene25411 Phyllostachys edulis HOM05M007622 ORTHO05M012749 1.0e-82 311.6 531 41.2
OB11G22700 Oryza brachyantha HOM05M007622 ORTHO05M012749 1.6e-64 251.1 245 55.9
OsKitaake07g160400 Oryza sativa Kitaake HOM05M007622 ORTHO05M012749 2.6e-62 243.8 229 57.2
PH02Gene25415 Phyllostachys edulis HOM05M007622 ORTHO05M011317 1.3e-61 241.5 760 29.1
Sobic.005G172700 Sorghum bicolor HOM05M007622 ORTHO05M011317 1.3e-58 231.5 917 25.4
Seita.8G174700 Setaria italica HOM05M007622 ORTHO05M011317 1.7e-58 231.1 874 25.1
GWHGAORA001081 Cenchrus purpureus HOM05M007622 ORTHO05M011317 1.5e-57 228.0 784 25.5
PH02Gene25413 Phyllostachys edulis HOM05M007622 ORTHO05M011317 1.9e-57 227.6 1034 25.5
Sspon.06G0025870-2D Saccharum spontaneum HOM05M007622 ORTHO05M011317 1.2e-56 224.9 913 24.4
GWHGAZTO064657 Oryza alta HOM05M007622 ORTHO05M011317 3.6e-56 223.4 918 24.9
Pahal.8G223000 Panicum hallii HOM05M007622 ORTHO05M011317 4.1e-52 209.9 781 25.4
GWHGAORA043438 Cenchrus purpureus HOM05M007622 ORTHO05M011317 8.6e-50 202.2 786 25.7
Dexi8A01G0014060 Digitaria exilis HOM05M007622 ORTHO05M011317 1.5e-46 191.4 842 25.5
OB11G24370 Oryza brachyantha HOM05M007622 ORTHO05M011317 1.5e-46 191.4 797 24.7
Dexi8B01G0012830 Digitaria exilis HOM05M007622 ORTHO05M011317 4.4e-46 189.9 843 25.7
MisinT012000 Miscanthus sinensis HOM05M007622 ORTHO05M011317 9.3e-44 182.2 804 25.0
OB11G24410 Oryza brachyantha HOM05M007622 ORTHO05M011317 1.7e-42 177.9 917 24.2
GWHGAORA001101 Cenchrus purpureus HOM05M007622 ORTHO05M011317 2.3e-42 177.6 681 24.7
OsR498G1120452900.01 Oryza sativa ssp. indica HOM05M007622 ORTHO05M011317 3.3e-41 173.7 958 22.9
Sevir.8G183900 Setaria viridis HOM05M007622 ORTHO05M011317 3.3e-41 173.7 695 24.3
Os11g0598800 Oryza sativa ssp. japonica HOM05M007622 ORTHO05M011317 1.6e-40 171.4 962 23.0
OsKitaake11g187000 Oryza sativa Kitaake HOM05M007622 ORTHO05M011317 2.8e-40 170.6 962 23.0
OsR498G1120440400.01 Oryza sativa ssp. indica HOM05M045951 ORTHO05M032614 1.2e-38 165.2 515 29.1
Sspon.06G0025870-1B Saccharum spontaneum HOM05M007622 ORTHO05M011317 8.4e-37 159.1 510 28.0
OsKitaake11g184450 Oryza sativa Kitaake HOM05M045951 ORTHO05M032614 3.2e-36 157.1 405 32.1
OsKitaake01g371500 Oryza sativa Kitaake HOM05M027878 ORTHO05M025627 1.9e-33 147.9 398 31.4
OsKitaake11g185700 Oryza sativa Kitaake HOM05M007622 ORTHO05M019717 9.9e-30 135.6 417 30.0
OsR498G0714419600.01 Oryza sativa ssp. indica HOM05M007622 ORTHO05M012749 8.4e-29 132.5 107 64.5
GWHGAZTO012617 Oryza alta HOM05M007622 ORTHO05M011317 4.2e-28 130.2 198 37.4
OsR498G1120453300.01 Oryza sativa ssp. indica HOM05M003185 ORTHO05M003774 5.1e-26 123.2 241 32.0
OsKitaake11g187100 Oryza sativa Kitaake HOM05M003185 ORTHO05M003774 5.6e-25 119.8 241 31.5
Bradi4g14601 Brachypodium distachyon HOM05M003185 ORTHO05M003774 2.1e-24 117.9 235 32.8
OB06G32630 Oryza brachyantha HOM05M003185 ORTHO05M003774 5.3e-23 113.2 228 29.4
TraesCS6B03G0438500 Triticum aestivum HOM05M003185 ORTHO05M003774 7.6e-22 109.4 233 31.8
TRITD6Bv1G062960 Triticum turgidum HOM05M003185 ORTHO05M003774 7.6e-22 109.4 233 31.8
Os11g0599101 Oryza sativa ssp. japonica HOM05M003185 ORTHO05M003774 1.0e-21 109.0 231 30.7
TraesCS5A03G0222700 Triticum aestivum HOM05M003185 ORTHO05M003774 2.2e-21 107.8 231 31.2
Bradi4g14584 Brachypodium distachyon HOM05M003185 ORTHO05M003774 4.9e-21 106.7 226 30.5
Asa5G02117 Allium sativum HOM05M002989 ORTHO05M003268 1.4e-20 105.1 276 29.0
GWHGAZTO012636 Oryza alta HOM05M003185 ORTHO05M003774 1.9e-17 94.7 188 32.4
OsKitaake11g185600 Oryza sativa Kitaake HOM05M007622 ORTHO05M011317 3.4e-14 84.0 101 37.6
V3.Lp_chr5_0G7030 Lolium perenne HOM05M003185 ORTHO05M003774 1.1e-12 79.0 191 28.3
OsKitaake11g187400 Oryza sativa Kitaake HOM05M003185 ORTHO05M003774 1.2e-11 75.5 179 29.6
EJB05_27648 Eragrostis curvula HOM05M007622 ORTHO05M011317 1.6e-11 75.1 177 28.8
GWHGAZTO063789 Oryza alta HOM05M007622 ORTHO05M176896 1.0e-10 72.4 49 69.4
OsR498G0613193200.01 Oryza sativa ssp. indica HOM05M003185 ORTHO05M003774 1.3e-10 72.0 160 29.4
Bradi4g14582 Brachypodium distachyon HOM05M003185 ORTHO05M003774 3.0e-10 70.9 169 31.4
GWHGAZTO040053 Oryza alta HOM05M007622 ORTHO05M158959 3.3e-09 67.4 76 51.3
GWHGAZTO012592 Oryza alta HOM05M007622 ORTHO05M011317 4.3e-09 67.0 222 22.5
OB11G24480 Oryza brachyantha HOM05M003185 ORTHO05M003774 5.7e-09 66.6 158 27.8
GWHGAZTO012616 Oryza alta HOM05M007622 ORTHO05M011317 7.4e-09 66.2 138 31.2
Glyma.17G095800 Glycine max HOM05M002989 ORTHO05M003268 2.2e-08 64.7 208 26.9
GWHGAZTO040057 Oryza alta HOM05M007622 ORTHO05M012749 4.8e-08 63.5 56 58.9
PH02Gene33972 Phyllostachys edulis HOM05M003185 ORTHO05M003774 4.8e-08 63.5 155 27.7
Os11g0599000 Oryza sativa ssp. japonica HOM05M003185 ORTHO05M003774 1.1e-07 62.4 108 31.5
GWHGAZTO064661 Oryza alta HOM05M003185 ORTHO05M003774 6.9e-07 59.7 270 23.7
OsR498G0102183700.01 Oryza sativa ssp. indica HOM05M027878 ORTHO05M025627 9.1e-07 59.3 132 32.6
AT1G52430 Arabidopsis thaliana HOM05M010807 ORTHO05M003268 1.2e-06 58.9 98 33.7
OB12G25880 Oryza brachyantha HOM05M029137 ORTHO05M188490 2.6e-06 57.8 69 46.4


User provided reference genes

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