Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0492100 Oryza sativa ssp. japonica HOM05M000010 ORTHO05M009264 1.2e-74 282.3 148 100.0
OsKitaake11g138500 Oryza sativa Kitaake HOM05M000010 ORTHO05M006112 1.0e-57 226.1 121 100.0
OsR498G1120170600.01 Oryza sativa ssp. indica HOM05M000010 ORTHO05M009264 1.8e-57 225.3 127 95.3
GWHGAZTO012031 Oryza alta HOM05M000010 ORTHO05M006112 3.6e-42 174.5 116 78.4
OsR498G1120172400.01 Oryza sativa ssp. indica HOM05M000010 ORTHO05M009264 1.2e-40 169.5 121 75.2
OB11G21150 Oryza brachyantha HOM05M000010 ORTHO05M006112 2.0e-37 158.7 120 73.3
PH02Gene26144 Phyllostachys edulis HOM05M000010 ORTHO05M006112 5.6e-35 150.6 123 67.5
PH02Gene45635 Phyllostachys edulis HOM05M000010 ORTHO05M006112 4.7e-34 147.5 125 67.2
PH02Gene48579 Phyllostachys edulis HOM05M000010 ORTHO05M006112 4.7e-34 147.5 128 68.0
OsKitaake11g139300 Oryza sativa Kitaake HOM05M000010 ORTHO05M006112 6.2e-34 147.1 126 66.7
PH02Gene47181 Phyllostachys edulis HOM05M000010 ORTHO05M006112 1.1e-33 146.4 125 68.8
PH02Gene32933 Phyllostachys edulis HOM05M000010 ORTHO05M006112 2.3e-33 145.2 125 68.8
GWHGAORA011610 Cenchrus purpureus HOM05M000010 ORTHO05M006112 4.0e-33 144.4 129 62.0
OsKitaake11g138300 Oryza sativa Kitaake HOM05M000010 ORTHO05M009264 4.0e-33 144.4 130 60.8
PH02Gene48865 Phyllostachys edulis HOM05M000010 ORTHO05M006112 5.2e-33 144.1 125 68.8
PH02Gene48864 Phyllostachys edulis HOM05M000010 ORTHO05M009264 6.8e-33 143.7 124 67.7
PH02Gene07266 Phyllostachys edulis HOM05M012858 ORTHO05M009264 1.2e-32 142.9 128 68.0
PH02Gene47822 Phyllostachys edulis HOM05M000010 ORTHO05M009264 1.2e-32 142.9 132 62.1
GWHGAORA042436 Cenchrus purpureus HOM05M000010 ORTHO05M006112 1.5e-32 142.5 130 63.1
OsKitaake11g138800 Oryza sativa Kitaake HOM05M000010 ORTHO05M006112 4.4e-32 141.0 114 67.5
GWHGAZTO012049 Oryza alta HOM05M000010 ORTHO05M009264 1.7e-31 139.0 111 69.4
PH02Gene07265 Phyllostachys edulis HOM05M000010 ORTHO05M006112 2.9e-31 138.3 125 68.0
PH02Gene48863 Phyllostachys edulis HOM05M004898 ORTHO05M006179 4.9e-31 137.5 131 64.1
EJB05_20969 Eragrostis curvula HOM05M000010 ORTHO05M006112 6.4e-31 137.1 127 60.6
OsKitaake11g138600 Oryza sativa Kitaake HOM05M000010 ORTHO05M006112 1.4e-30 136.0 122 61.5
PH02Gene27794 Phyllostachys edulis HOM05M000010 ORTHO05M006112 2.4e-30 135.2 122 63.1
Dexi8B01G0009200 Digitaria exilis HOM05M000010 ORTHO05M009264 2.7e-29 131.7 122 59.8
OB11G21160 Oryza brachyantha HOM05M000010 ORTHO05M006112 2.7e-29 131.7 108 70.4
PH02Gene46723 Phyllostachys edulis HOM05M000010 ORTHO05M009264 3.9e-28 127.9 123 60.2
PH02Gene47826 Phyllostachys edulis HOM05M005906 ORTHO05M007151 3.9e-28 127.9 128 62.5
PH02Gene37719 Phyllostachys edulis HOM05M000010 ORTHO05M006112 5.1e-28 127.5 122 59.8
Ot_Chr2_g10603 Oropetium thomaeum HOM05M000010 ORTHO05M006112 1.5e-27 125.9 122 60.7
GWHGAZTO012030 Oryza alta HOM05M000010 ORTHO05M009264 1.5e-27 125.9 111 57.7
EJB05_27124 Eragrostis curvula HOM05M000010 ORTHO05M006112 2.1e-26 122.1 124 58.1
EJB05_38111 Eragrostis curvula HOM05M000010 ORTHO05M006112 8.1e-26 120.2 110 60.0
PH02Gene32927 Phyllostachys edulis HOM05M000010 ORTHO05M006112 8.1e-26 120.2 122 59.0
EJB05_03188 Eragrostis curvula HOM05M000010 ORTHO05M006112 1.4e-25 119.4 122 59.0
OsR498G1120176700.01 Oryza sativa ssp. indica HOM05M000010 ORTHO05M006112 1.8e-25 119.0 127 51.2
GWHGAZTO012046 Oryza alta HOM05M000010 ORTHO05M006112 3.1e-25 118.2 142 51.4
EJB05_34724 Eragrostis curvula HOM05M000010 ORTHO05M006112 2.0e-24 115.5 126 54.0
OsKitaake11g139000 Oryza sativa Kitaake HOM05M000010 ORTHO05M006112 2.6e-24 115.2 128 51.6
PH02Gene29689 Phyllostachys edulis HOM05M000010 ORTHO05M006112 2.6e-24 115.2 118 60.2
Sspon.06G0032540-1C Saccharum spontaneum HOM05M000010 ORTHO05M006112 5.8e-24 114.0 102 62.7
Zjn_sc00048.1.g00770.1.am.mk Zoysia japonica ssp. nagirizaki HOM05M000010 ORTHO05M009264 1.3e-23 112.8 127 53.5
GWHGAZTO012044 Oryza alta HOM05M000010 ORTHO05M009264 3.8e-23 111.3 141 49.6
Misin09G125200 Miscanthus sinensis HOM05M000010 ORTHO05M009264 1.9e-22 109.0 98 61.2
Sspon.06G0025070-1B Saccharum spontaneum HOM05M012858 ORTHO05M009264 5.4e-22 107.5 136 48.5
EJB05_31650 Eragrostis curvula HOM05M000010 ORTHO05M006112 2.7e-21 105.1 119 52.9
Dexi9A01G0031270 Digitaria exilis HOM05M000134 ORTHO05M000079 1.5e-19 99.4 94 55.3
Sobic.005G119250 Sorghum bicolor HOM05M000010 ORTHO05M006112 5.6e-19 97.4 83 65.1
EJB05_20975 Eragrostis curvula HOM05M000010 ORTHO05M009264 9.6e-19 96.7 70 71.4
Sspon.06G0032550-1C Saccharum spontaneum HOM05M000010 ORTHO05M006112 1.1e-17 93.2 81 63.0
Zjn_sc00048.1.g00810.1.sm.mk Zoysia japonica ssp. nagirizaki HOM05M000010 ORTHO05M009264 1.1e-17 93.2 63 74.6
EJB05_06069 Eragrostis curvula HOM05M000010 ORTHO05M006112 1.4e-17 92.8 94 54.3
Zjn_sc00048.1.g00850.1.sm.mk Zoysia japonica ssp. nagirizaki HOM05M000010 ORTHO05M009264 1.8e-17 92.4 63 74.6
EJB05_27123 Eragrostis curvula HOM05M000010 ORTHO05M006112 5.2e-17 90.9 120 46.7
EJB05_31634 Eragrostis curvula HOM05M000010 ORTHO05M006112 5.2e-17 90.9 126 50.0
EJB05_05861 Eragrostis curvula HOM05M000010 ORTHO05M010307 2.6e-16 88.6 117 43.6
OB03G32900 Oryza brachyantha HOM05M000010 ORTHO05M010307 1.7e-15 85.9 104 51.0
PH02Gene33511 Phyllostachys edulis HOM05M000010 ORTHO05M010307 2.9e-15 85.1 107 49.5
Dexi8B01G0009850 Digitaria exilis HOM05M000010 ORTHO05M009264 3.8e-15 84.7 78 62.8
GWHGAZTO025173 Oryza alta HOM05M000010 ORTHO05M010307 3.8e-15 84.7 118 43.2
OsKitaake03g239000 Oryza sativa Kitaake HOM05M000010 ORTHO05M010307 6.4e-15 84.0 104 51.0
GWHGAZTO025180 Oryza alta HOM05M007300 ORTHO05M006383 1.4e-14 82.8 104 49.0
GWHGAZTO075206 Oryza alta HOM05M000010 ORTHO05M009264 1.4e-14 82.8 104 51.9
OsR498G0306443900.01 Oryza sativa ssp. indica HOM05M000010 ORTHO05M010307 1.9e-14 82.4 104 50.0
Dexi9A01G0017350 Digitaria exilis HOM05M000010 ORTHO05M010307 3.2e-14 81.6 119 42.9
p5.00_sc00148_p0017 Elaeis guineensis HOM05M000010 ORTHO05M009264 4.2e-14 81.3 117 46.2
OsR498G1120175900.01 Oryza sativa ssp. indica HOM05M000010 ORTHO05M006112 4.2e-14 81.3 54 72.2
Ot_Chr4_g24534 Oropetium thomaeum HOM05M000010 ORTHO05M010307 5.4e-14 80.9 122 42.6
Zjn_sc00019.1.g00280.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM05M000010 ORTHO05M010307 5.4e-14 80.9 118 40.7
Seita.9G181300 Setaria italica HOM05M000010 ORTHO05M010307 9.3e-14 80.1 119 41.2
Sevir.9G180200 Setaria viridis HOM05M000010 ORTHO05M010307 9.3e-14 80.1 119 41.2
GWHGAORA018718 Cenchrus purpureus HOM05M000010 ORTHO05M010307 1.6e-13 79.3 118 41.5
GWHGAORA051905 Cenchrus purpureus HOM05M000010 ORTHO05M010307 1.6e-13 79.3 118 41.5
OsKitaake03g238800 Oryza sativa Kitaake HOM05M000010 ORTHO05M010307 1.6e-13 79.3 118 43.2
OsR498G0306441900.01 Oryza sativa ssp. indica HOM05M000010 ORTHO05M010307 1.6e-13 79.3 118 43.2
Os03g0579200 Oryza sativa ssp. japonica HOM05M000010 ORTHO05M010307 1.6e-13 79.3 118 43.2
PH02Gene31059 Phyllostachys edulis HOM05M000010 ORTHO05M006112 2.1e-13 79.0 132 43.9
Sspon.01G0060230-1D Saccharum spontaneum HOM05M029009 ORTHO05M010307 3.5e-13 78.2 118 38.1
p5.00_sc00148_p0015 Elaeis guineensis HOM05M000010 ORTHO05M009264 4.6e-13 77.8 117 44.4
Sobic.001G182800 Sorghum bicolor HOM05M000010 ORTHO05M010307 2.3e-12 75.5 108 44.4
CALSI_Maker00011131 Calamus simplicifolius HOM05M009058 ORTHO05M009264 3.0e-12 75.1 117 44.4
CALSI_Maker00036339 Calamus simplicifolius HOM05M009058 ORTHO05M009264 3.0e-12 75.1 117 44.4
p5.00_sc00125_p0024 Elaeis guineensis HOM05M000010 ORTHO05M009264 5.1e-12 74.3 115 47.0
DDU524G0590 Dioscorea dumetorum HOM05M000010 ORTHO05M000491 6.6e-12 73.9 131 39.7
p5.00_sc00010_p0048 Elaeis guineensis HOM05M009058 ORTHO05M009264 8.7e-12 73.6 117 44.4
CALSI_Maker00011129 Calamus simplicifolius HOM05M009058 ORTHO05M009264 1.5e-11 72.8 117 42.7
Ma10_g24810 Musa acuminata HOM05M000010 ORTHO05M010307 1.9e-11 72.4 108 42.6
OB03G32870 Oryza brachyantha HOM05M000010 ORTHO05M010307 1.9e-11 72.4 104 41.3
Sobic.005G118600 Sorghum bicolor HOM05M000010 ORTHO05M006112 3.3e-11 71.6 40 87.5
CALSI_Maker00024141 Calamus simplicifolius HOM05M009058 ORTHO05M009264 4.3e-11 71.2 117 42.7
Misin01G160500 Miscanthus sinensis HOM05M000010 ORTHO05M010307 4.3e-11 71.2 108 43.5
CALSI_Maker00011130 Calamus simplicifolius HOM05M009058 ORTHO05M009264 5.6e-11 70.9 117 42.7
p5.00_sc00221_p0003 Elaeis guineensis HOM05M000010 ORTHO05M011480 5.6e-11 70.9 115 43.5
OsKitaake11g138850 Oryza sativa Kitaake HOM05M000010 ORTHO05M009264 9.6e-11 70.1 76 55.3
CALSI_Maker00018131 Calamus simplicifolius HOM05M009058 ORTHO05M009264 1.3e-10 69.7 117 41.9
CALSI_Maker00048183 Calamus simplicifolius HOM05M043422 ORTHO05M016055 2.1e-10 68.9 110 40.0
DDU061G0004 Dioscorea dumetorum HOM05M000010 ORTHO05M000491 2.8e-10 68.6 97 43.3
DDU421G0173 Dioscorea dumetorum HOM05M000010 ORTHO05M000491 2.8e-10 68.6 97 43.3
p5.00_sc00010_p0049 Elaeis guineensis HOM05M000010 ORTHO05M009264 2.8e-10 68.6 118 44.1
p5.00_sc00032_p0110 Elaeis guineensis HOM05M000010 ORTHO05M000491 3.6e-10 68.2 98 45.9
Aco010517 Ananas comosus HOM05M000010 ORTHO05M000491 4.8e-10 67.8 121 40.5
EJB05_27193 Eragrostis curvula HOM05M000010 ORTHO05M011480 6.2e-10 67.4 117 36.8
Misin02G160200 Miscanthus sinensis HOM05M000010 ORTHO05M010307 6.2e-10 67.4 124 38.7
Aco019451 Ananas comosus HOM05M000010 ORTHO05M010307 1.1e-09 66.6 121 39.7
CALSI_Maker00011124 Calamus simplicifolius HOM05M009058 ORTHO05M009264 1.1e-09 66.6 107 41.1
CALSI_Maker00047213 Calamus simplicifolius HOM05M009058 ORTHO05M009264 1.1e-09 66.6 107 41.1
Ma06_g33700 Musa acuminata HOM05M000010 ORTHO05M000491 1.1e-09 66.6 117 40.2
Aco001975 Ananas comosus HOM05M000580 ORTHO05M000512 1.8e-09 65.9 121 38.0
CALSI_Maker00010155 Calamus simplicifolius HOM05M009058 ORTHO05M009264 1.8e-09 65.9 88 47.7
EJB05_27172 Eragrostis curvula HOM05M000010 ORTHO05M011480 1.8e-09 65.9 117 35.9
Aco015029 Ananas comosus HOM05M000010 ORTHO05M000491 3.1e-09 65.1 110 43.6
PH02Gene16183 Phyllostachys edulis HOM05M000010 ORTHO05M011480 4.0e-09 64.7 114 36.0
Misin01G160600 Miscanthus sinensis HOM05M000010 ORTHO05M010307 5.3e-09 64.3 127 34.6
DDU036G0007 Dioscorea dumetorum HOM05M000010 ORTHO05M000491 6.9e-09 63.9 116 37.1
DDU059G0197 Dioscorea dumetorum HOM05M000010 ORTHO05M000491 6.9e-09 63.9 116 37.1
GWHGAZTO055498 Oryza alta HOM05M000010 ORTHO05M011480 6.9e-09 63.9 102 38.2
GWHGAZTO075197 Oryza alta HOM05M000010 ORTHO05M010307 6.9e-09 63.9 88 45.5
OB01G27500 Oryza brachyantha HOM05M009058 ORTHO05M009264 6.9e-09 63.9 104 42.3
CALSI_Maker00010163 Calamus simplicifolius HOM05M017420 ORTHO05M009264 2.0e-08 62.4 98 40.8
EJB05_22894 Eragrostis curvula HOM05M000010 ORTHO05M011480 4.5e-08 61.2 78 42.3
EJB05_27174 Eragrostis curvula HOM05M000010 ORTHO05M011480 4.5e-08 61.2 78 42.3
GWHGAORA023263 Cenchrus purpureus HOM05M000010 ORTHO05M006112 5.8e-08 60.8 124 41.9
Dexi7B01G0005360 Digitaria exilis HOM05M000010 ORTHO05M024384 7.6e-08 60.5 110 43.6
CALSI_Maker00038726 Calamus simplicifolius HOM05M009058 ORTHO05M009264 9.9e-08 60.1 63 52.4
OsKitaake01g189900 Oryza sativa Kitaake HOM05M000010 ORTHO05M011480 1.7e-07 59.3 114 35.1
Sspon.05G0012950-2C Saccharum spontaneum HOM05M000010 ORTHO05M006112 3.8e-07 58.2 141 38.3
GWHGAORA061424 Cenchrus purpureus HOM05M000010 ORTHO05M006112 4.9e-07 57.8 124 41.1
Misin12G055300 Miscanthus sinensis HOM05M000010 ORTHO05M006112 4.9e-07 57.8 128 42.2
Sobic.006G050700 Sorghum bicolor HOM05M000010 ORTHO05M006112 4.9e-07 57.8 125 41.6
Sobic.001G182700 Sorghum bicolor HOM05M000010 ORTHO05M010307 6.4e-07 57.4 100 38.0
DDU044G0003 Dioscorea dumetorum HOM05M000010 ORTHO05M000491 8.4e-07 57.0 105 39.0
Zm00007a00045962 Zea mays B104 HOM05M000010 ORTHO05M011480 1.1e-06 56.6 109 37.6
GWHGAORA043134 Cenchrus purpureus HOM05M000010 ORTHO05M011480 1.4e-06 56.2 120 36.7
Sspon.05G0012950-1A Saccharum spontaneum HOM05M000010 ORTHO05M006112 1.4e-06 56.2 108 44.4
Dexi8B01G0010740 Digitaria exilis HOM05M000010 ORTHO05M011480 1.9e-06 55.8 122 36.1
Aco010519 Ananas comosus HOM05M000010 ORTHO05M010307 2.4e-06 55.5 93 39.8
CALSI_Maker00048184 Calamus simplicifolius HOM05M000051 ORTHO05M000241 2.4e-06 55.5 85 44.7
CALSI_Maker00048193 Calamus simplicifolius HOM05M000051 ORTHO05M000241 2.4e-06 55.5 85 44.7
DDU196G0010 Dioscorea dumetorum HOM05M000010 ORTHO05M000491 3.2e-06 55.1 105 38.1
Ma06_g36620 Musa acuminata HOM05M000010 ORTHO05M000491 5.4e-06 54.3 62 45.2
OsKitaake01g189800 Oryza sativa Kitaake HOM05M000010 ORTHO05M011480 7.1e-06 53.9 99 37.4
OsR498G0101131600.01 Oryza sativa ssp. indica HOM05M000010 ORTHO05M011480 7.1e-06 53.9 99 37.4
Os01g0520600 Oryza sativa ssp. japonica HOM05M000010 ORTHO05M011480 7.1e-06 53.9 99 37.4
Zjn_sc00087.1.g00560.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM05M009058 ORTHO05M011480 9.3e-06 53.5 117 31.6


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