Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0300650 Oryza sativa ssp. japonica HOM05M006999 ORTHO05M007571 3.7e-54 213.8 101 100.0
OsKitaake08g103900 Oryza sativa Kitaake HOM05M046878 ORTHO05M007571 9.7e-39 162.5 86 90.7
OsR498G0815665700.01 Oryza sativa ssp. indica HOM05M046878 ORTHO05M007571 4.1e-37 157.1 86 87.2
GWHGAZTO040901 Oryza alta HOM05M006999 ORTHO05M007571 1.4e-16 89.0 44 86.4
GWHGAZTO053561 Oryza alta HOM05M006999 ORTHO05M007571 1.4e-16 89.0 44 86.4
OB01G15360 Oryza brachyantha HOM05M006999 ORTHO05M007571 3.0e-16 87.8 45 82.2
Pahal.5G500400 Panicum hallii HOM05M006999 ORTHO05M007571 2.0e-15 85.1 45 80.0
Bradi2g05320 Brachypodium distachyon HOM05M006999 ORTHO05M007571 3.4e-15 84.3 45 77.8
PH02Gene06261 Phyllostachys edulis HOM05M006999 ORTHO05M007571 3.4e-15 84.3 45 77.8
GWHGAORA033899 Cenchrus purpureus HOM05M006999 ORTHO05M007571 5.7e-15 83.6 44 79.5
GWHGAORA041066 Cenchrus purpureus HOM05M006999 ORTHO05M007571 5.7e-15 83.6 44 79.5
Dexi5A01G0003920 Digitaria exilis HOM05M006999 ORTHO05M007571 5.7e-15 83.6 45 77.8
Dexi5B01G0004000 Digitaria exilis HOM05M006999 ORTHO05M007571 5.7e-15 83.6 45 77.8
EJB05_31117 Eragrostis curvula HOM05M006999 ORTHO05M007571 7.5e-15 83.2 45 75.6
Ot_Chr3_g07327 Oropetium thomaeum HOM05M006999 ORTHO05M007571 7.5e-15 83.2 45 75.6
Seita.5G130600 Setaria italica HOM05M006999 ORTHO05M007571 1.3e-14 82.4 45 77.8
Sevir.5G128400 Setaria viridis HOM05M006999 ORTHO05M007571 1.3e-14 82.4 45 77.8
MisinT355500 Miscanthus sinensis HOM05M006999 ORTHO05M007571 1.7e-14 82.0 46 73.9
Sobic.003G040100 Sorghum bicolor HOM05M006999 ORTHO05M007571 2.2e-14 81.6 46 73.9
Zjn_sc00011.1.g06580.1.am.mk Zoysia japonica ssp. nagirizaki HOM05M006999 ORTHO05M007571 2.2e-14 81.6 45 75.6
Misin06G030400 Miscanthus sinensis HOM05M006999 ORTHO05M007571 2.8e-14 81.3 46 73.9
Os08g0290500 Oryza sativa ssp. japonica HOM05M006999 ORTHO05M007571 2.8e-14 81.3 65 64.6
Sspon.03G0022380-1A Saccharum spontaneum HOM05M006999 ORTHO05M007571 2.8e-14 81.3 46 73.9
Sspon.03G0022380-2B Saccharum spontaneum HOM05M006999 ORTHO05M007571 2.8e-14 81.3 46 73.9
Sspon.03G0022380-3D Saccharum spontaneum HOM05M006999 ORTHO05M007571 2.8e-14 81.3 46 73.9
Zm00001eb122030 Zea mays B73 HOM05M006999 ORTHO05M007571 3.7e-14 80.9 46 73.9
Zm00007a00013120 Zea mays B104 HOM05M006999 ORTHO05M007571 3.7e-14 80.9 46 73.9
OsKitaake01g060300 Oryza sativa Kitaake HOM05M006999 ORTHO05M007571 4.8e-14 80.5 40 87.5
OsR498G0100284400.01 Oryza sativa ssp. indica HOM05M006999 ORTHO05M007571 4.8e-14 80.5 40 87.5
TraesCS3D03G0241400 Triticum aestivum HOM05M006999 ORTHO05M007571 8.3e-14 79.7 45 75.6
Ma07_g13310 Musa acuminata HOM05M006999 ORTHO05M007571 1.4e-13 79.0 42 78.6
Misin05G042300 Miscanthus sinensis HOM05M006999 ORTHO05M007571 2.4e-13 78.2 46 71.7
TraesCS3A03G0247700 Triticum aestivum HOM05M006999 ORTHO05M007571 4.1e-13 77.4 45 73.3
TRIDC3AG014090 Triticum dicoccoides HOM05M006999 ORTHO05M007571 4.1e-13 77.4 45 73.3
GWHGASIY014279 Secale cereale HOM05M006999 ORTHO05M007571 7.0e-13 76.6 45 71.1
GWHGASIY019155 Secale cereale HOM05M006999 ORTHO05M007571 7.0e-13 76.6 45 71.1
Horvu_MOREX_3H01G132100 Hordeum vulgare HOM05M006999 ORTHO05M007571 1.2e-12 75.9 45 71.1
CALSI_Maker00016468 Calamus simplicifolius HOM05M006999 ORTHO05M007571 1.6e-12 75.5 42 71.4
p5.00_sc00001_p0026 Elaeis guineensis HOM05M006999 ORTHO05M007571 1.6e-12 75.5 42 71.4
V3.Lp_chr3_0G8712 Lolium perenne HOM05M006999 ORTHO05M007571 1.6e-12 75.5 45 68.9
TraesCS3B03G0316700 Triticum aestivum HOM05M006999 ORTHO05M007571 2.7e-12 74.7 45 71.1
DDU521G0128 Dioscorea dumetorum HOM05M003711 ORTHO05M004517 1.7e-11 72.0 44 65.9
DDU624G0009 Dioscorea dumetorum HOM05M006999 ORTHO05M007571 1.7e-11 72.0 44 65.9
ATR0051G042 Amborella trichopoda HOM05M006999 ORTHO05M007571 3.8e-11 70.9 44 61.4
HPP92_021749 Vanilla planifolia HOM05M006999 ORTHO05M007571 8.5e-11 69.7 43 65.1
AT3G14740 Arabidopsis thaliana HOM05M006999 ORTHO05M007571 1.1e-10 69.3 42 64.3
CDE06G1605 Ceratophyllum demersum HOM05M006999 ORTHO05M007571 2.5e-10 68.2 42 61.9
Aco014382 Ananas comosus HOM05M006999 ORTHO05M007571 3.2e-10 67.8 42 64.3
Aco015254 Ananas comosus HOM05M006999 ORTHO05M007571 3.2e-10 67.8 42 64.3
Potri.011G103100 Populus trichocarpa HOM05M006999 ORTHO05M007571 5.5e-10 67.0 46 60.9
Zosma06g09010 Zostera marina HOM05M006999 ORTHO05M007571 5.5e-10 67.0 42 64.3
Potri.001G382500 Populus trichocarpa HOM05M006999 ORTHO05M007571 1.2e-09 65.9 46 56.5
CDE02G4695 Ceratophyllum demersum HOM05M006999 ORTHO05M007571 4.7e-09 63.9 46 54.3
AagrBONN_evm.TU.Sc2ySwM_344.1598 Anthoceros agrestis HOM05M006999 ORTHO05M007571 1.0e-08 62.8 58 53.4
PRCOL_00005644 Prasinoderma coloniale HOM05M006999 ORTHO05M007571 2.3e-08 61.6 46 56.5
AagrBONN_evm.TU.Sc2ySwM_344.772 Anthoceros agrestis HOM05M000749 ORTHO05M000022 4.0e-08 60.8 37 64.9
Solyc07g062100.4 Solanum lycopersicum HOM05M006999 ORTHO05M007571 4.0e-08 60.8 43 55.8
Glyma.15G210600 Glycine max HOM05M006999 ORTHO05M007571 8.8e-08 59.7 47 57.4
Glyma.15G211600 Glycine max HOM05M006999 ORTHO05M007571 8.8e-08 59.7 47 57.4
Pp3c9_22160 Physcomitrium patens HOM05M006999 ORTHO05M007571 1.2e-07 59.3 42 54.8
Pp3c16_18950 Physcomitrium patens HOM05M000749 ORTHO05M000022 1.5e-07 58.9 38 60.5
SEGI_07265 Sequoiadendron giganteum HOM05M006999 ORTHO05M007571 1.5e-07 58.9 40 62.5
Pp3c15_18060 Physcomitrium patens HOM05M006999 ORTHO05M007571 3.4e-07 57.8 37 59.5
Pp3c5_20190 Physcomitrium patens HOM05M000749 ORTHO05M000022 7.5e-07 56.6 38 55.3
SMO143G0053 Selaginella moellendorffii HOM05M000749 ORTHO05M000022 7.5e-07 56.6 34 64.7
MBI11_g00125_MAGBIO Magnolia biondii HOM05M000749 ORTHO05M000022 9.8e-07 56.2 38 57.9
AET5Gv20416900 Aegilops tauschii HOM05M000749 ORTHO05M000022 1.3e-06 55.8 37 56.8
Bradi4g08510 Brachypodium distachyon HOM05M000749 ORTHO05M000022 1.3e-06 55.8 37 56.8
GWHGAORA047620 Cenchrus purpureus HOM05M000749 ORTHO05M000022 1.3e-06 55.8 37 56.8
CBR_g9119 Chara braunii HOM05M000175 ORTHO05M000022 1.3e-06 55.8 39 59.0
Dexi2A01G0013230 Digitaria exilis HOM05M000749 ORTHO05M000022 1.3e-06 55.8 37 56.8
EJB05_44457 Eragrostis curvula HOM05M000749 ORTHO05M000022 1.3e-06 55.8 37 56.8
Horvu_MOREX_5H01G282000 Hordeum vulgare HOM05M000749 ORTHO05M000022 1.3e-06 55.8 37 56.8
V3.Lp_chr5_0G10120 Lolium perenne HOM05M000749 ORTHO05M000022 1.3e-06 55.8 37 56.8
Misin03G126200 Miscanthus sinensis HOM05M000749 ORTHO05M000022 1.3e-06 55.8 37 56.8
Misin04G139000 Miscanthus sinensis HOM05M000749 ORTHO05M000022 1.3e-06 55.8 37 56.8
Ot_Chr2_g26190 Oropetium thomaeum HOM05M000749 ORTHO05M000022 1.3e-06 55.8 37 56.8
GWHGAZTO050048 Oryza alta HOM05M000749 ORTHO05M000022 1.3e-06 55.8 37 56.8
GWHGAZTO096687 Oryza alta HOM05M000749 ORTHO05M000022 1.3e-06 55.8 37 56.8
OB09G11020 Oryza brachyantha HOM05M000749 ORTHO05M000022 1.3e-06 55.8 37 56.8
OsKitaake09g014300 Oryza sativa Kitaake HOM05M000749 ORTHO05M000022 1.3e-06 55.8 37 56.8
OsR498G0916763200.01 Oryza sativa ssp. indica HOM05M000749 ORTHO05M000022 1.3e-06 55.8 37 56.8
Os09g0134500 Oryza sativa ssp. japonica HOM05M000749 ORTHO05M000022 1.3e-06 55.8 37 56.8
Pahal.2G179000 Panicum hallii HOM05M000749 ORTHO05M000022 1.3e-06 55.8 37 56.8
PH02Gene12811 Phyllostachys edulis HOM05M000749 ORTHO05M000022 1.3e-06 55.8 37 56.8
PH02Gene41220 Phyllostachys edulis HOM05M000749 ORTHO05M000022 1.3e-06 55.8 37 56.8
GWHGASIY025682 Secale cereale HOM05M000749 ORTHO05M000022 1.3e-06 55.8 37 56.8
Seita.2G148500 Setaria italica HOM05M000749 ORTHO05M000022 1.3e-06 55.8 37 56.8
Sevir.2G155000 Setaria viridis HOM05M000749 ORTHO05M000022 1.3e-06 55.8 37 56.8
Sobic.002G148400 Sorghum bicolor HOM05M000749 ORTHO05M000022 1.3e-06 55.8 37 56.8
Spipo4G0043900 Spirodela polyrhiza HOM05M000749 ORTHO05M000022 1.3e-06 55.8 37 56.8
TraesCS5A03G0447600 Triticum aestivum HOM05M000749 ORTHO05M000022 1.3e-06 55.8 37 56.8
TraesCS5B03G0442200 Triticum aestivum HOM05M000749 ORTHO05M000022 1.3e-06 55.8 37 56.8
TraesCS5D03G0414600 Triticum aestivum HOM05M000749 ORTHO05M000022 1.3e-06 55.8 37 56.8
TRIDC5BG028640 Triticum dicoccoides HOM05M000749 ORTHO05M000022 1.3e-06 55.8 37 56.8
TRITD5Av1G123660 Triticum turgidum HOM05M000749 ORTHO05M000022 1.3e-06 55.8 37 56.8
TRITD5Bv1G101640 Triticum turgidum HOM05M000749 ORTHO05M000022 1.3e-06 55.8 37 56.8
Zm00001eb308480 Zea mays B73 HOM05M000749 ORTHO05M000022 1.3e-06 55.8 37 56.8
Asa6G04737 Allium sativum HOM05M000749 ORTHO05M000022 2.2e-06 55.1 37 59.5
Mapoly0051s0016 Marchantia polymorpha HOM05M000749 ORTHO05M000022 2.8e-06 54.7 37 59.5
Potri.002G232800 Populus trichocarpa HOM05M000749 ORTHO05M000022 2.8e-06 54.7 48 45.8
CDE06G2342 Ceratophyllum demersum HOM05M000749 ORTHO05M000022 3.7e-06 54.3 37 56.8
AT2G31650 Arabidopsis thaliana HOM05M000749 ORTHO05M000022 4.9e-06 53.9 37 56.8
AT1G05830 Arabidopsis thaliana HOM05M000749 ORTHO05M000022 6.3e-06 53.5 37 56.8
Pp3c6_7710 Physcomitrium patens HOM05M000749 ORTHO05M000022 6.3e-06 53.5 38 52.6
Potri.014G146300 Populus trichocarpa HOM05M000749 ORTHO05M000022 6.3e-06 53.5 37 56.8
Solyc09g098260.3 Solanum lycopersicum HOM05M000749 ORTHO05M000022 6.3e-06 53.5 37 56.8
Glyma.08G258500 Glycine max HOM05M000749 ORTHO05M000022 8.3e-06 53.1 37 56.8
Glyma.18G282700 Glycine max HOM05M000749 ORTHO05M000022 8.3e-06 53.1 37 56.8


User provided reference genes

Program Settings