Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0237700 Oryza sativa ssp. japonica HOM05M005455 ORTHO05M006256 1.4e-129 465.7 264 100.0
OsKitaake11g085200 Oryza sativa Kitaake HOM05M005455 ORTHO05M006256 2.2e-122 441.8 264 95.8
GWHGAZTO011076 Oryza alta HOM05M005455 ORTHO05M006256 7.7e-112 406.8 255 90.6
OsKitaake05g113000 Oryza sativa Kitaake HOM05M005455 ORTHO05M006256 3.6e-109 397.9 255 91.0
Os05g0318300 Oryza sativa ssp. japonica HOM05M005455 ORTHO05M006256 3.6e-109 397.9 255 91.0
GWHGAZTO063050 Oryza alta HOM05M005455 ORTHO05M006256 1.4e-108 396.0 255 91.0
OsR498G1119671000.01 Oryza sativa ssp. indica HOM05M005455 ORTHO05M006256 4.0e-100 367.9 209 99.5
Seita.5G139500 Setaria italica HOM05M005455 ORTHO05M006256 1.7e-98 362.5 255 80.4
Sevir.5G137500 Setaria viridis HOM05M005455 ORTHO05M006256 1.7e-98 362.5 255 80.4
Pahal.5G509600 Panicum hallii HOM05M005455 ORTHO05M006256 1.4e-97 359.4 258 77.1
TraesCS3A03G0226800 Triticum aestivum HOM05M005455 ORTHO05M006256 4.1e-97 357.8 258 76.4
Misin05G032600 Miscanthus sinensis HOM05M005455 ORTHO05M006256 7.0e-97 357.1 256 80.1
GWHGAORA040953 Cenchrus purpureus HOM05M005455 ORTHO05M006256 9.1e-97 356.7 242 81.0
Sspon.03G0023100-1A Saccharum spontaneum HOM05M005455 ORTHO05M006256 9.1e-97 356.7 256 81.6
Sspon.03G0023100-2B Saccharum spontaneum HOM05M005455 ORTHO05M006256 9.1e-97 356.7 256 82.0
Sobic.003G030400 Sorghum bicolor HOM05M005455 ORTHO05M006256 1.6e-96 355.9 256 82.0
EJB05_30999 Eragrostis curvula HOM05M005455 ORTHO05M006256 3.5e-96 354.8 243 81.9
Ot_Chr3_g22972 Oropetium thomaeum HOM05M005455 ORTHO05M006256 3.5e-96 354.8 254 76.4
Misin06G025600 Miscanthus sinensis HOM05M005455 ORTHO05M006256 7.7e-96 353.6 255 82.0
Sspon.03G0023100-3C Saccharum spontaneum HOM05M005455 ORTHO05M006256 7.7e-96 353.6 256 78.9
Bradi2g06000 Brachypodium distachyon HOM05M005455 ORTHO05M006256 1.0e-95 353.2 253 76.3
GWHGASIY013685 Secale cereale HOM05M005455 ORTHO05M006256 1.0e-95 353.2 256 81.6
Horvu_MOREX_3H01G117900 Hordeum vulgare HOM05M005455 ORTHO05M006256 1.3e-95 352.8 259 75.3
TraesCS3B03G0278400 Triticum aestivum HOM05M005455 ORTHO05M006256 2.9e-95 351.7 258 74.4
TraesCS3D03G0218300 Triticum aestivum HOM05M005455 ORTHO05M006256 2.9e-95 351.7 263 73.4
AET3Gv20227900 Aegilops tauschii HOM05M005455 ORTHO05M006256 6.6e-95 350.5 242 77.3
TRITD3Bv1G037760 Triticum turgidum HOM05M005455 ORTHO05M006256 9.5e-94 346.7 244 75.4
Zm00001eb120860 Zea mays B73 HOM05M005455 ORTHO05M006256 9.5e-94 346.7 257 76.7
PH02Gene18356 Phyllostachys edulis HOM05M005455 ORTHO05M006256 1.6e-93 345.9 195 91.8
V3.Lp_chr3_0G8174 Lolium perenne HOM05M005455 ORTHO05M006256 2.1e-93 345.5 258 73.6
GWHGAORA033982 Cenchrus purpureus HOM05M005455 ORTHO05M006256 4.4e-91 337.8 253 75.1
TRIDC3BG016980 Triticum dicoccoides HOM05M005455 ORTHO05M006256 3.2e-89 331.6 195 87.7
GWHGASIY013690 Secale cereale HOM05M005455 ORTHO05M006256 2.0e-88 328.9 195 86.2
TRIDC3AG012630 Triticum dicoccoides HOM05M005455 ORTHO05M006256 8.6e-87 323.6 190 88.9
OB11G16160 Oryza brachyantha HOM05M005455 ORTHO05M006256 1.4e-84 316.2 156 99.4
TRITD3Av1G031450 Triticum turgidum HOM05M005455 ORTHO05M006256 9.5e-70 266.9 196 72.4
CALSI_Maker00033063 Calamus simplicifolius HOM05M005455 ORTHO05M006256 2.2e-66 255.8 165 72.1
evm.TU.AsparagusV1_01.2332.V1.1 Asparagus officinalis HOM05M005455 ORTHO05M006256 1.6e-64 249.6 258 53.9
Ma02_g21360 Musa acuminata HOM05M005455 ORTHO05M006256 1.0e-63 246.9 161 73.9
HPP92_003969 Vanilla planifolia HOM05M005455 ORTHO05M006256 4.0e-60 235.0 154 72.7
DDU521G0326 Dioscorea dumetorum HOM05M005455 ORTHO05M006256 9.3e-57 223.8 177 66.1
Zjn_sc00011.1.g07640.1.am.mkhc Zoysia japonica ssp. nagirizaki HOM05M005455 ORTHO05M006256 2.7e-56 222.2 165 70.3
AT3G13740 Arabidopsis thaliana HOM05M005455 ORTHO05M006256 3.9e-55 218.4 170 64.1
Glyma.15G023700 Glycine max HOM05M005455 ORTHO05M006256 8.7e-55 217.2 145 71.0
Solyc03g121530.3 Solanum lycopersicum HOM05M005455 ORTHO05M006256 4.3e-54 214.9 171 59.6
Spipo14G0010700 Spirodela polyrhiza HOM05M005455 ORTHO05M006256 1.6e-53 213.0 154 68.8
Potri.001G200300 Populus trichocarpa HOM05M005455 ORTHO05M006256 2.4e-52 209.1 153 64.1
CDE06G0040 Ceratophyllum demersum HOM05M005455 ORTHO05M006256 4.0e-52 208.4 152 62.5
AT1G55140 Arabidopsis thaliana HOM05M005455 ORTHO05M006256 2.9e-50 202.2 158 62.0
MBI01_g01270_MAGBIO Magnolia biondii HOM05M005455 ORTHO05M006256 3.8e-50 201.8 152 65.1
Zosma01g22640 Zostera marina HOM05M005455 ORTHO05M006256 6.0e-48 194.5 170 57.6
p5.00_sc00001_p0045 Elaeis guineensis HOM05M005455 ORTHO05M006256 1.1e-46 190.3 132 68.9
Zosma04g03370 Zostera marina HOM05M005455 ORTHO05M006256 3.3e-46 188.7 131 70.2
CALSI_Maker00033227 Calamus simplicifolius HOM05M005455 ORTHO05M006256 5.6e-46 188.0 122 71.3
CALSI_Maker00050535 Calamus simplicifolius HOM05M005455 ORTHO05M006256 5.6e-46 188.0 122 71.3
Dexi5A01G0003070 Digitaria exilis HOM05M005455 ORTHO05M006256 7.3e-46 187.6 165 63.6
Pp3c14_13400 Physcomitrium patens HOM05M005455 ORTHO05M006256 3.4e-43 178.7 157 56.7
SEGI_12033 Sequoiadendron giganteum HOM05M005455 ORTHO05M006256 2.9e-42 175.6 111 73.9
Zjn_sc00005.1.g03130.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM05M005455 ORTHO05M006256 1.9e-41 172.9 253 45.5
AagrBONN_evm.TU.Sc2ySwM_344.3620 Anthoceros agrestis HOM05M005455 ORTHO05M006256 3.5e-40 168.7 133 62.4
Mapoly0003s0025 Marchantia polymorpha HOM05M005455 ORTHO05M006256 5.1e-39 164.9 149 53.0
ATR0661G556 Amborella trichopoda HOM05M005455 ORTHO05M006256 1.9e-38 162.9 127 62.2
CBR_g18726 Chara braunii HOM05M005455 ORTHO05M006256 4.8e-37 158.3 134 56.7
Aco000427 Ananas comosus HOM05M005455 ORTHO05M006256 4.0e-36 155.2 111 72.1
Zm00007a00046373 Zea mays B104 HOM05M005455 ORTHO05M006256 9.0e-36 154.1 149 66.4
SMO134G0002 Selaginella moellendorffii HOM05M005455 ORTHO05M006256 1.2e-35 153.7 131 56.5
OsR498G1119670400.01 Oryza sativa ssp. indica HOM05M005455 ORTHO05M006256 1.4e-33 146.7 90 90.0
Dexi5B01G0003090 Digitaria exilis HOM05M005455 ORTHO05M006256 6.2e-29 131.3 165 50.3
Asa8G01247 Allium sativum HOM05M005455 ORTHO05M006256 5.3e-28 128.3 107 64.5
Sspon.03G0023100-4D Saccharum spontaneum HOM05M005455 ORTHO05M006256 5.5e-25 118.2 148 58.8
CALSI_Maker00023722 Calamus simplicifolius HOM05M005455 ORTHO05M006256 1.0e-23 114.0 175 38.9
CALSI_Maker00010583 Calamus simplicifolius HOM05M005455 ORTHO05M006256 6.7e-23 111.3 154 43.5
CALSI_Maker00031635 Calamus simplicifolius HOM05M005455 ORTHO05M006256 2.5e-22 109.4 153 43.1
MCO11G030 Micromonas commoda HOM05M005455 ORTHO05M006256 2.0e-19 99.8 139 39.6
Seita.5G139600 Setaria italica HOM05M005455 ORTHO05M006256 5.3e-12 75.1 78 56.4
CALSI_Maker00012245 Calamus simplicifolius HOM05M005455 ORTHO05M006256 3.4e-11 72.4 36 80.6
Potri.003G038400 Populus trichocarpa HOM05M005455 ORTHO05M006256 1.6e-08 63.5 97 38.1
MCO01G154 Micromonas commoda HOM05M005455 ORTHO05M006256 4.4e-06 55.5 217 26.3


User provided reference genes

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