Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0221000 Oryza sativa ssp. japonica HOM05M000128 ORTHO05M010471 5.3e-130 467.2 289 100.0
OsKitaake11g076700 Oryza sativa Kitaake HOM05M000128 ORTHO05M010471 5.8e-121 437.2 273 100.0
OsR498G1119634900.01 Oryza sativa ssp. indica HOM05M000128 ORTHO05M010471 1.3e-107 392.9 274 91.6
GWHGAZTO063127 Oryza alta HOM05M000128 ORTHO05M010471 3.6e-94 348.2 287 75.6
GWHGAZTO010982 Oryza alta HOM05M000128 ORTHO05M010471 6.7e-93 344.0 277 74.4
OB11G15530 Oryza brachyantha HOM05M000128 ORTHO05M010471 3.0e-61 238.8 292 63.7
PH02Gene33862 Phyllostachys edulis HOM05M000128 ORTHO05M010471 5.7e-60 234.6 291 55.3
PH02Gene26194 Phyllostachys edulis HOM05M000128 ORTHO05M010471 3.0e-53 212.2 292 55.8
Bradi4g22060 Brachypodium distachyon HOM05M000128 ORTHO05M010471 7.3e-47 191.0 303 46.9
AET4Gv20227900 Aegilops tauschii HOM05M000128 ORTHO05M010471 1.2e-46 190.3 299 48.2
TraesCS4A03G0547000 Triticum aestivum HOM05M000128 ORTHO05M010471 1.2e-46 190.3 299 48.5
TraesCS4D03G0209200 Triticum aestivum HOM05M000128 ORTHO05M010471 1.2e-46 190.3 299 48.2
TraesCS4B03G0246700 Triticum aestivum HOM05M000128 ORTHO05M010471 2.1e-46 189.5 301 47.8
Horvu_MOREX_4H01G104800 Hordeum vulgare HOM05M000128 ORTHO05M010471 3.6e-46 188.7 287 47.7
Seita.8G092200 Setaria italica HOM05M000128 ORTHO05M010471 6.2e-46 188.0 283 45.6
TRITD4Av1G158770 Triticum turgidum HOM05M000128 ORTHO05M010471 8.0e-46 187.6 299 48.2
Sevir.8G093800 Setaria viridis HOM05M000128 ORTHO05M010471 1.1e-45 187.2 284 46.8
TRITD4Bv1G041740 Triticum turgidum HOM05M000128 ORTHO05M010471 1.4e-45 186.8 297 47.8
Dexi8A01G0008540 Digitaria exilis HOM05M000128 ORTHO05M010471 3.1e-45 185.7 294 44.2
V3.Lp_chr4_0G10944 Lolium perenne HOM05M000128 ORTHO05M010471 5.2e-45 184.9 213 56.8
Dexi8B01G0007350 Digitaria exilis HOM05M000128 ORTHO05M010471 8.9e-45 184.1 295 43.7
EJB05_28357 Eragrostis curvula HOM05M000128 ORTHO05M010471 1.5e-44 183.3 289 44.6
GWHGASIY019011 Secale cereale HOM05M000128 ORTHO05M010471 1.5e-44 183.3 301 47.8
Sspon.05G0016400-3D Saccharum spontaneum HOM05M000128 ORTHO05M010471 5.8e-44 181.4 316 43.4
Sspon.05G0016400-2B Saccharum spontaneum HOM05M000128 ORTHO05M010471 2.4e-42 176.0 288 43.8
Sobic.005G098400 Sorghum bicolor HOM05M000128 ORTHO05M010471 5.4e-42 174.9 294 46.6
Misin09G096000 Miscanthus sinensis HOM05M000128 ORTHO05M010471 1.3e-40 170.2 202 53.0
GWHGAORA011635 Cenchrus purpureus HOM05M000128 ORTHO05M010471 6.6e-40 167.9 289 42.6
GWHGAORA042407 Cenchrus purpureus HOM05M000128 ORTHO05M010471 7.3e-39 164.5 288 46.2
Zjn_sc00109.1.g00250.1.am.mk Zoysia japonica ssp. nagirizaki HOM05M000128 ORTHO05M010471 3.6e-38 162.2 233 47.2
Pahal.8G115300 Panicum hallii HOM05M000128 ORTHO05M010471 3.1e-37 159.1 166 57.8
Zm00007a00003470 Zea mays B104 HOM05M000128 ORTHO05M010471 3.1e-37 159.1 301 41.5
Zm00001eb169200 Zea mays B73 HOM05M000128 ORTHO05M010471 1.2e-36 157.1 301 41.9
Zjn_sc00031.1.g04570.1.sm.mk Zoysia japonica ssp. nagirizaki HOM05M000128 ORTHO05M010471 2.1e-30 136.3 203 47.8
Zm00007a00034848 Zea mays B104 HOM05M000128 ORTHO05M010471 8.4e-27 124.4 315 35.9
Zm00001eb090870 Zea mays B73 HOM05M000128 ORTHO05M010471 5.4e-26 121.7 295 35.3
Misin10G079800 Miscanthus sinensis HOM05M000128 ORTHO05M010471 1.4e-21 107.1 275 32.7
Aco011286 Ananas comosus HOM05M000128 ORTHO05M000083 4.0e-21 105.5 236 36.0
TRIDC4AG032590 Triticum dicoccoides HOM05M000128 ORTHO05M010471 3.4e-20 102.4 114 58.8
Sspon.05G0016400-1A Saccharum spontaneum HOM05M000128 ORTHO05M010471 2.2e-19 99.8 116 53.4
Aco003342 Ananas comosus HOM05M000128 ORTHO05M010471 1.6e-17 93.6 200 39.0
evm.TU.AsparagusV1_09.305.V1.1 Asparagus officinalis HOM05M000128 ORTHO05M000083 1.0e-16 90.9 166 39.2
p5.00_sc00051_p0113 Elaeis guineensis HOM05M000128 ORTHO05M000083 1.3e-16 90.5 235 31.9
CALSI_Maker00017577 Calamus simplicifolius HOM05M000128 ORTHO05M000083 5.1e-16 88.6 231 37.2
DDU879G0580 Dioscorea dumetorum HOM05M000128 ORTHO05M000083 1.1e-15 87.4 159 39.6
DDU701G0012 Dioscorea dumetorum HOM05M000128 ORTHO05M000083 1.9e-15 86.7 198 35.9
CALSI_Maker00012117 Calamus simplicifolius HOM05M000128 ORTHO05M000083 5.6e-15 85.1 168 35.1
HPP92_004465 Vanilla planifolia HOM05M000128 ORTHO05M010471 2.1e-14 83.2 154 38.3
HPP92_004489 Vanilla planifolia HOM05M000128 ORTHO05M000083 2.1e-14 83.2 154 38.3
Ma06_g30840 Musa acuminata HOM05M000128 ORTHO05M000083 6.2e-14 81.6 232 33.6
Ma09_g08030 Musa acuminata HOM05M000128 ORTHO05M000083 3.1e-13 79.3 200 34.5
GWHGAZTO093297 Oryza alta HOM05M000128 ORTHO05M000083 9.0e-13 77.8 149 40.9
OsKitaake08g007000 Oryza sativa Kitaake HOM05M000128 ORTHO05M000083 1.5e-12 77.0 149 40.3
OsR498G0815049700.01 Oryza sativa ssp. indica HOM05M000128 ORTHO05M000083 1.5e-12 77.0 149 40.3
Os08g0109400 Oryza sativa ssp. japonica HOM05M000128 ORTHO05M000083 1.5e-12 77.0 149 40.3
OB08G10790 Oryza brachyantha HOM05M000128 ORTHO05M000083 4.5e-12 75.5 150 39.3
Horvu_MOREX_7H01G440900 Hordeum vulgare HOM05M000128 ORTHO05M000083 7.6e-12 74.7 149 36.2
Ma07_g03190 Musa acuminata HOM05M000128 ORTHO05M000083 7.6e-12 74.7 168 32.7
Bradi3g13370 Brachypodium distachyon HOM05M000128 ORTHO05M000083 1.3e-11 73.9 158 36.1
GWHGAZTO046365 Oryza alta HOM05M000128 ORTHO05M000083 1.7e-11 73.6 150 39.3
TRIDC4BG016860 Triticum dicoccoides HOM05M000128 ORTHO05M010471 1.7e-11 73.6 147 38.8
PH02Gene30055 Phyllostachys edulis HOM05M000128 ORTHO05M000083 2.2e-11 73.2 154 39.0
TRIDC4BG016870 Triticum dicoccoides HOM05M000128 ORTHO05M010471 2.2e-11 73.2 93 54.8
GWHGASIY039572 Secale cereale HOM05M000128 ORTHO05M000083 8.4e-11 71.2 149 34.2
Sspon.06G0013230-1A Saccharum spontaneum HOM05M000128 ORTHO05M000083 1.4e-10 70.5 151 39.1
Sspon.06G0013230-2C Saccharum spontaneum HOM05M000128 ORTHO05M000083 1.4e-10 70.5 151 39.1
TraesCS7A03G0794900 Triticum aestivum HOM05M000128 ORTHO05M000083 3.2e-10 69.3 149 34.9
TraesCS7B03G0633300 Triticum aestivum HOM05M000128 ORTHO05M000083 3.2e-10 69.3 149 36.2
MBI06_g44455_MAGBIO Magnolia biondii HOM05M000128 ORTHO05M000083 5.4e-10 68.6 162 36.4
TraesCS7D03G0759100 Triticum aestivum HOM05M000128 ORTHO05M000083 9.3e-10 67.8 149 35.6
GWHGAORA035508 Cenchrus purpureus HOM05M000128 ORTHO05M000083 3.5e-09 65.9 148 35.1
MBI03_g18679_MAGBIO Magnolia biondii HOM05M000128 ORTHO05M000083 3.5e-09 65.9 166 34.9
Pahal.6G007400 Panicum hallii HOM05M000128 ORTHO05M000083 4.6e-09 65.5 149 32.2
Seita.6G009300 Setaria italica HOM05M000128 ORTHO05M000083 6.0e-09 65.1 148 35.1
Sevir.6G008400 Setaria viridis HOM05M000128 ORTHO05M000083 6.0e-09 65.1 148 35.1
MisinT379100 Miscanthus sinensis HOM05M000128 ORTHO05M000083 1.0e-08 64.3 151 35.1
Sspon.06G0013230-3D Saccharum spontaneum HOM05M000128 ORTHO05M000083 1.0e-08 64.3 144 38.9
Dexi6A01G0000960 Digitaria exilis HOM05M000128 ORTHO05M000083 5.1e-08 62.0 150 32.0
OsKitaake06g149900 Oryza sativa Kitaake HOM05M000128 ORTHO05M000083 5.1e-08 62.0 103 41.7
V3.Lp_chr7_0.1G7924 Lolium perenne HOM05M000128 ORTHO05M000083 6.7e-08 61.6 149 33.6
OsR498G0612482600.01 Oryza sativa ssp. indica HOM05M000128 ORTHO05M000083 1.9e-07 60.1 103 40.8
GWHGAORA013855 Cenchrus purpureus HOM05M000128 ORTHO05M000083 2.5e-07 59.7 148 32.4
Misin13G002800 Miscanthus sinensis HOM05M000128 ORTHO05M000083 4.3e-07 58.9 150 36.0
Sobic.007G009300 Sorghum bicolor HOM05M000128 ORTHO05M000083 7.4e-07 58.2 150 35.3
Zjn_sc00071.1.g00390.1.sm.mk Zoysia japonica ssp. nagirizaki HOM05M000128 ORTHO05M000083 3.7e-06 55.8 153 33.3
Zm00001eb174180 Zea mays B73 HOM05M000128 ORTHO05M000083 6.2e-06 55.1 151 35.1
Ma08_g19190 Musa acuminata HOM05M000128 ORTHO05M011059 8.1e-06 54.7 50 50.0
TRIDC7AG045190 Triticum dicoccoides HOM05M000128 ORTHO05M000083 8.1e-06 54.7 106 34.9
TRIDC7BG037010 Triticum dicoccoides HOM05M000128 ORTHO05M000083 8.1e-06 54.7 106 36.8
TRITD7Av1G170400 Triticum turgidum HOM05M000128 ORTHO05M000083 8.1e-06 54.7 106 34.9


User provided reference genes

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