Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
OsKitaake11g069950 Oryza sativa Kitaake HOM05M000406 ORTHO05M018357 2.6e-119 431.4 237 100.0
Os11g0209050 Oryza sativa ssp. japonica HOM05M000406 ORTHO05M018357 2.6e-119 431.4 237 100.0
GWHGAZTO015265 Oryza alta HOM05M000406 ORTHO05M001003 9.4e-93 343.2 221 90.0
GWHGAZTO067138 Oryza alta HOM05M000406 ORTHO05M001003 3.6e-92 341.3 224 89.3
OsKitaake12g146400 Oryza sativa Kitaake HOM05M000406 ORTHO05M001003 6.5e-86 320.5 226 85.8
Os12g0515500 Oryza sativa ssp. japonica HOM05M000406 ORTHO05M001003 6.5e-86 320.5 226 85.8
OsR498G1221715900.01 Oryza sativa ssp. indica HOM05M000406 ORTHO05M001003 4.2e-85 317.8 224 86.2
PH02Gene27671 Phyllostachys edulis HOM05M000406 ORTHO05M001003 9.7e-82 306.6 220 83.2
PH02Gene43485 Phyllostachys edulis HOM05M000406 ORTHO05M001003 3.7e-81 304.7 220 84.1
Seita.3G350600 Setaria italica HOM05M000406 ORTHO05M001003 7.0e-80 300.4 222 79.7
Sevir.3G366400 Setaria viridis HOM05M000406 ORTHO05M001003 7.0e-80 300.4 222 79.7
Misin15G121500 Miscanthus sinensis HOM05M000406 ORTHO05M001003 1.0e-78 296.6 220 80.0
GWHGAORA014050 Cenchrus purpureus HOM05M000406 ORTHO05M001003 8.5e-78 293.5 222 79.3
GWHGAORA014012 Cenchrus purpureus HOM05M000406 ORTHO05M001003 1.9e-77 292.4 222 78.8
Sobic.008G112500 Sorghum bicolor HOM05M000406 ORTHO05M001003 2.5e-77 292.0 220 78.6
Pahal.3G446800 Panicum hallii HOM05M000406 ORTHO05M001003 3.2e-77 291.6 222 78.4
GWHGAORA035241 Cenchrus purpureus HOM05M000406 ORTHO05M001003 4.2e-77 291.2 222 78.8
Zm00001eb137750 Zea mays B73 HOM05M000406 ORTHO05M001003 4.2e-77 291.2 220 78.6
Zm00007a00012934 Zea mays B104 HOM05M000406 ORTHO05M001003 4.2e-77 291.2 220 78.6
Zm00001eb410920 Zea mays B73 HOM05M000406 ORTHO05M001003 5.5e-77 290.8 220 78.2
Zm00007a00011179 Zea mays B104 HOM05M000406 ORTHO05M001003 5.5e-77 290.8 220 78.2
TRIDC5BG017440 Triticum dicoccoides HOM05M000406 ORTHO05M001003 1.2e-76 289.7 221 80.5
GWHGASIY025010 Secale cereale HOM05M000406 ORTHO05M001003 2.1e-76 288.9 221 80.5
Sspon.02G0027810-1A Saccharum spontaneum HOM05M000406 ORTHO05M001003 2.7e-76 288.5 220 78.2
Sspon.02G0027810-2B Saccharum spontaneum HOM05M000406 ORTHO05M001003 2.7e-76 288.5 220 78.2
Sspon.02G0027810-3C Saccharum spontaneum HOM05M000406 ORTHO05M001003 2.7e-76 288.5 220 78.2
Sspon.02G0027810-4D Saccharum spontaneum HOM05M000406 ORTHO05M001003 2.7e-76 288.5 220 78.2
TraesCS5A03G0252600 Triticum aestivum HOM05M000406 ORTHO05M001003 3.6e-76 288.1 221 80.1
TRIDC5AG015470 Triticum dicoccoides HOM05M000406 ORTHO05M018357 3.6e-76 288.1 221 80.1
TRITD5Av1G056940 Triticum turgidum HOM05M000406 ORTHO05M001003 3.6e-76 288.1 221 80.1
Horvu_MOREX_5H01G168500 Hordeum vulgare HOM05M000406 ORTHO05M001003 4.7e-76 287.7 221 79.6
TraesCS5B03G0268700 Triticum aestivum HOM05M000406 ORTHO05M001003 6.1e-76 287.3 221 80.1
TRITD5Bv1G051110 Triticum turgidum HOM05M000406 ORTHO05M001003 6.1e-76 287.3 221 80.1
AET5Gv20252400 Aegilops tauschii HOM05M000406 ORTHO05M001003 8.0e-76 287.0 221 79.6
Misin14G102600 Miscanthus sinensis HOM05M000406 ORTHO05M018357 8.0e-76 287.0 220 78.2
TraesCS5D03G0264300 Triticum aestivum HOM05M000406 ORTHO05M001003 8.0e-76 287.0 221 79.6
Bradi4g06290 Brachypodium distachyon HOM05M000406 ORTHO05M001003 3.0e-75 285.0 221 79.2
Ot_Chr10_g24151 Oropetium thomaeum HOM05M000406 ORTHO05M001003 3.0e-75 285.0 219 79.0
Zjn_sc00113.1.g00520.1.sm.mk Zoysia japonica ssp. nagirizaki HOM05M000406 ORTHO05M001003 2.6e-74 282.0 220 78.6
V3.Lp_chr5_0G5152 Lolium perenne HOM05M000406 ORTHO05M001003 3.4e-74 281.6 221 77.8
Zjn_sc00038.1.g01060.1.am.mk Zoysia japonica ssp. nagirizaki HOM05M000406 ORTHO05M001003 8.0e-68 260.4 214 75.2
Zm00001eb071410 Zea mays B73 HOM05M000406 ORTHO05M037633 1.5e-53 213.0 165 76.4
Zm00007a00020881 Zea mays B104 HOM05M000406 ORTHO05M037633 1.5e-53 213.0 165 76.4
OB12G21400 Oryza brachyantha HOM05M000406 ORTHO05M001003 2.6e-50 202.2 126 89.7
Zm00001eb298900 Zea mays B73 HOM05M000406 ORTHO05M018357 2.1e-47 192.6 146 78.1
Zm00007a00008504 Zea mays B104 HOM05M000406 ORTHO05M018357 3.0e-46 188.7 144 77.8
Zjn_sc00013.1.g01110.1.am.mk Zoysia japonica ssp. nagirizaki HOM05M000406 ORTHO05M001003 1.8e-35 152.9 256 46.9
CALSI_Maker00010856 Calamus simplicifolius HOM05M000406 ORTHO05M001003 2.4e-35 152.5 265 46.4
Pahal.9G126800 Panicum hallii HOM05M000406 ORTHO05M001003 3.1e-35 152.1 269 48.0
OB03G37760 Oryza brachyantha HOM05M000406 ORTHO05M001003 1.5e-34 149.8 258 48.1
OsKitaake03g302300 Oryza sativa Kitaake HOM05M000406 ORTHO05M001003 2.0e-34 149.4 257 47.9
OsR498G0306869300.01 Oryza sativa ssp. indica HOM05M000406 ORTHO05M001003 2.0e-34 149.4 257 47.9
Os03g0698800 Oryza sativa ssp. japonica HOM05M000406 ORTHO05M001003 2.0e-34 149.4 257 47.9
GWHGAZTO026141 Oryza alta HOM05M000406 ORTHO05M001003 2.6e-34 149.1 258 48.1
Ot_Chr4_gn35486 Oropetium thomaeum HOM05M000406 ORTHO05M001003 4.4e-34 148.3 259 46.3
GWHGAORA019297 Cenchrus purpureus HOM05M000406 ORTHO05M001003 5.8e-34 147.9 259 48.6
GWHGAORA051345 Cenchrus purpureus HOM05M000406 ORTHO05M001003 7.6e-34 147.5 260 48.1
Zjn_sc00014.1.g00990.1.sm.mk Zoysia japonica ssp. nagirizaki HOM05M000406 ORTHO05M001003 7.6e-34 147.5 270 47.0
Dexi9A01G0012330 Digitaria exilis HOM05M000406 ORTHO05M001003 9.9e-34 147.1 259 47.9
PH02Gene33725 Phyllostachys edulis HOM05M000406 ORTHO05M001003 3.8e-33 145.2 257 48.6
Zm00001eb216910 Zea mays B73 HOM05M000406 ORTHO05M001003 3.8e-33 145.2 261 46.0
Zm00007a00008675 Zea mays B104 HOM05M000406 ORTHO05M001003 3.8e-33 145.2 261 46.0
Sobic.001G127200 Sorghum bicolor HOM05M000406 ORTHO05M001003 4.9e-33 144.8 257 47.9
Misin01G117400 Miscanthus sinensis HOM05M000406 ORTHO05M001003 6.4e-33 144.4 258 47.7
Sspon.01G0007550-1A Saccharum spontaneum HOM05M000406 ORTHO05M001003 6.4e-33 144.4 258 47.7
PH02Gene18259 Phyllostachys edulis HOM05M000406 ORTHO05M001003 8.4e-33 144.1 259 47.5
Ma03_g30970 Musa acuminata HOM05M000406 ORTHO05M001003 1.1e-32 143.7 257 45.5
Sevir.9G127800 Setaria viridis HOM05M000406 ORTHO05M001003 1.1e-32 143.7 261 47.5
Sspon.01G0007550-2D Saccharum spontaneum HOM05M000406 ORTHO05M001003 1.9e-32 142.9 258 47.3
Zm00001eb053870 Zea mays B73 HOM05M000406 ORTHO05M001003 2.4e-32 142.5 258 47.3
Zm00007a00038486 Zea mays B104 HOM05M000406 ORTHO05M001003 2.4e-32 142.5 258 47.3
Seita.9G128700 Setaria italica HOM05M000406 ORTHO05M001003 1.2e-31 140.2 263 46.8
Misin02G104900 Miscanthus sinensis HOM05M000406 ORTHO05M001003 1.6e-31 139.8 258 46.9
TraesCS4B03G0080800 Triticum aestivum HOM05M000406 ORTHO05M001003 3.9e-30 135.2 265 45.3
TRITD4Bv1G010370 Triticum turgidum HOM05M000406 ORTHO05M001003 3.9e-30 135.2 265 45.3
Bradi1g11760 Brachypodium distachyon HOM05M000406 ORTHO05M001003 5.6e-29 131.3 268 43.3
Potri.006G053800 Populus trichocarpa HOM05M000406 ORTHO05M001003 7.3e-29 131.0 255 44.7
TraesCS4A03G0713300 Triticum aestivum HOM05M000406 ORTHO05M001003 9.6e-29 130.6 275 44.4
TRIDC4AG042930 Triticum dicoccoides HOM05M000406 ORTHO05M001003 9.6e-29 130.6 275 44.4
TRITD4Av1G195550 Triticum turgidum HOM05M000406 ORTHO05M001003 9.6e-29 130.6 275 44.4
AET4Gv20068900 Aegilops tauschii HOM05M000406 ORTHO05M001003 1.2e-28 130.2 265 44.5
Aco012259 Ananas comosus HOM05M000406 ORTHO05M001003 1.2e-28 130.2 234 44.9
GWHGASIY018218 Secale cereale HOM05M000406 ORTHO05M001003 1.2e-28 130.2 265 44.5
TraesCS4D03G0057300 Triticum aestivum HOM05M000406 ORTHO05M001003 1.2e-28 130.2 265 44.5
V3.Lp_chr4_0G7540 Lolium perenne HOM05M000406 ORTHO05M001003 1.6e-28 129.8 278 42.4
TRIDC4BG006040 Triticum dicoccoides HOM05M000406 ORTHO05M001003 1.6e-28 129.8 265 44.5
Horvu_MOREX_4H01G035100 Hordeum vulgare HOM05M000406 ORTHO05M001003 2.8e-28 129.0 267 44.6
Aco000296 Ananas comosus HOM05M000406 ORTHO05M001003 1.8e-27 126.3 247 44.9
CALSI_Maker00016207 Calamus simplicifolius HOM05M000406 ORTHO05M001003 6.9e-27 124.4 264 44.7
Ma08_g31790 Musa acuminata HOM05M000406 ORTHO05M001003 2.0e-26 122.9 266 43.2
Potri.016G053700 Populus trichocarpa HOM05M000406 ORTHO05M001003 2.6e-26 122.5 251 43.4
Glyma.15G274800 Glycine max HOM05M000406 ORTHO05M001003 3.4e-26 122.1 250 43.6
Asa6G03372 Allium sativum HOM05M000406 ORTHO05M001003 5.8e-26 121.3 236 45.8
CDE05G2951 Ceratophyllum demersum HOM05M000406 ORTHO05M001003 1.3e-25 120.2 254 42.1
Solyc03g063680.3 Solanum lycopersicum HOM05M000406 ORTHO05M001003 1.3e-25 120.2 260 43.5
Potri.006G053900 Populus trichocarpa HOM05M000406 ORTHO05M001003 2.9e-25 119.0 245 44.5
evm.TU.AsparagusV1_03.2537.V1.1 Asparagus officinalis HOM05M000406 ORTHO05M001003 4.9e-25 118.2 267 41.6
Glyma.09G102900 Glycine max HOM05M000406 ORTHO05M001003 1.1e-24 117.1 250 42.4
HPP92_006098 Vanilla planifolia HOM05M000406 ORTHO05M001003 1.1e-24 117.1 255 41.6
Ma01_g16320 Musa acuminata HOM05M000406 ORTHO05M001003 1.4e-24 116.7 256 41.4
Glyma.03G138600 Glycine max HOM05M000406 ORTHO05M001003 3.2e-24 115.5 229 43.2
Ma04_g13890 Musa acuminata HOM05M000406 ORTHO05M001003 4.2e-24 115.2 257 42.0
Glyma.10G100400 Glycine max HOM05M000406 ORTHO05M001003 5.4e-24 114.8 266 42.5
Glyma.13G202800 Glycine max HOM05M000406 ORTHO05M001003 9.3e-24 114.0 261 42.9
Spipo2G0069900 Spirodela polyrhiza HOM05M000406 ORTHO05M001003 1.6e-23 113.2 266 41.7
MBI01_g32960_MAGBIO Magnolia biondii HOM05M000406 ORTHO05M001003 2.7e-23 112.5 253 42.3
Glyma.12G237300 Glycine max HOM05M000406 ORTHO05M001003 3.5e-23 112.1 255 42.7
Ma11_g11490 Musa acuminata HOM05M000406 ORTHO05M001003 1.0e-22 110.5 267 40.4
Solyc01g087170.3 Solanum lycopersicum HOM05M000406 ORTHO05M001003 3.0e-22 109.0 248 40.3
PH02Gene32291 Phyllostachys edulis HOM05M000406 ORTHO05M001003 3.9e-22 108.6 94 72.3
Zosma06g22950 Zostera marina HOM05M000406 ORTHO05M001003 3.9e-22 108.6 267 40.4
AT2G41900 Arabidopsis thaliana HOM05M000406 ORTHO05M001003 1.9e-21 106.3 254 40.9
Ma04_g06930 Musa acuminata HOM05M000406 ORTHO05M001003 4.3e-21 105.1 254 38.6
Spipo9G0013000 Spirodela polyrhiza HOM05M000406 ORTHO05M001003 4.3e-21 105.1 275 38.9
DDU801G0315 Dioscorea dumetorum HOM05M000406 ORTHO05M001003 2.8e-20 102.4 266 39.5
Potri.001G266700 Populus trichocarpa HOM05M000406 ORTHO05M001003 2.8e-20 102.4 246 40.2
Potri.009G061000 Populus trichocarpa HOM05M000406 ORTHO05M001003 1.4e-19 100.1 246 42.7
HPP92_024880 Vanilla planifolia HOM05M000406 ORTHO05M001003 2.4e-19 99.4 253 39.9
Ma07_g28950 Musa acuminata HOM05M000406 ORTHO05M001003 4.0e-19 98.6 252 37.3
HPP92_009581 Vanilla planifolia HOM05M000406 ORTHO05M001003 3.8e-17 92.0 235 41.7
Solyc10g079120.3 Solanum lycopersicum HOM05M000406 ORTHO05M001003 6.4e-17 91.3 251 37.1
Solyc10g080260.3 Solanum lycopersicum HOM05M000406 ORTHO05M001003 1.4e-16 90.1 259 36.7
Zm00007a00011280 Zea mays B104 HOM05M002606 ORTHO05M003159 3.2e-16 89.0 59 81.4
evm.TU.AsparagusV1_03.1118.V1.1 Asparagus officinalis HOM05M000406 ORTHO05M027582 3.9e-14 82.0 167 41.3
Zm00007a00031966 Zea mays B104 HOM05M000406 ORTHO05M001003 8.7e-14 80.9 55 78.2
PH02Gene05077 Phyllostachys edulis HOM05M000406 ORTHO05M001003 8.1e-12 74.3 76 65.8
AT5G12850 Arabidopsis thaliana HOM05M000406 ORTHO05M001003 2.0e-10 69.7 230 35.2
Glyma.19G141700 Glycine max HOM05M000406 ORTHO05M001003 2.0e-10 69.7 201 38.3
Asa6G06625 Allium sativum HOM05M000406 ORTHO05M001003 1.7e-09 66.6 187 38.0
Zm00007a00012034 Zea mays B104 HOM05M004205 ORTHO05M006162 4.2e-08 62.0 49 75.5
Misin04G325600 Miscanthus sinensis HOM05M000406 ORTHO05M001003 7.1e-08 61.2 249 32.1
GWHGAZTO076086 Oryza alta HOM05M000406 ORTHO05M001003 7.1e-08 61.2 111 45.0
Sspon.02G0004860-1A Saccharum spontaneum HOM05M000406 ORTHO05M001003 4.6e-07 58.5 222 31.5
Horvu_MOREX_2H01G261900 Hordeum vulgare HOM05M000406 ORTHO05M001003 1.0e-06 57.4 258 30.2
GWHGAORA049239 Cenchrus purpureus HOM05M000406 ORTHO05M001003 3.0e-06 55.8 253 29.6
AET2Gv20420500 Aegilops tauschii HOM05M000406 ORTHO05M001003 3.9e-06 55.5 258 29.5
TraesCS2D03G0434200 Triticum aestivum HOM05M000406 ORTHO05M001003 3.9e-06 55.5 258 29.5
TRIDC2BG030260-75646 Triticum dicoccoides HOM05M000406 ORTHO05M001003 3.9e-06 55.5 258 28.7
ATR0332G105 Amborella trichopoda HOM05M000406 ORTHO05M001003 6.7e-06 54.7 200 37.5
GWHGAORA006599 Cenchrus purpureus HOM05M000406 ORTHO05M001003 6.7e-06 54.7 253 29.2
Zm00001eb107170 Zea mays B73 HOM05M000406 ORTHO05M001003 8.7e-06 54.3 162 34.6
Zm00007a00016495 Zea mays B104 HOM05M000406 ORTHO05M001003 8.7e-06 54.3 168 33.9


User provided reference genes

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